Wall clock time and date at job start Wed Apr 1 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 N 1.46500 * 109.46662 * 180.02562 * 19 17 16 21 21 C 1.46493 * 120.00178 * 274.99715 * 20 19 17 22 22 S 1.65600 * 120.00085 * 95.00522 * 20 19 17 23 23 C 1.81400 * 104.45088 * 89.99195 * 22 20 19 24 24 O 1.42099 * 104.28047 * 206.06671 * 22 20 19 25 25 O 1.42107 * 104.27469 * 333.92438 * 22 20 19 26 26 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 27 27 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 35 35 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 36 36 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 37 37 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 38 38 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 39 39 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 40 40 H 1.09001 * 109.47208 * 90.00767 * 21 20 19 41 41 H 1.09011 * 109.47469 * 210.00663 * 21 20 19 42 42 H 1.09006 * 109.47304 * 330.00548 * 21 20 19 43 43 H 1.08996 * 109.46891 * 60.00459 * 23 22 20 44 44 H 1.09007 * 109.47215 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47599 * 300.00094 * 23 22 20 46 46 H 1.09005 * 109.58831 * 293.82980 * 26 16 15 47 47 H 1.09001 * 109.58907 * 173.40185 * 26 16 15 48 48 H 1.09000 * 109.50066 * 301.34096 * 27 13 2 49 49 H 1.09007 * 109.49775 * 61.40191 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 7 -0.0078 -4.5749 5.8443 21 6 0.7575 -4.9767 7.0270 22 16 -1.6632 -4.5714 5.8912 23 6 -2.1349 -6.2374 5.3503 24 8 -1.9745 -4.3864 7.2653 25 8 -2.0392 -3.6062 4.9184 26 6 2.0706 -0.7041 3.7469 27 6 1.5298 0.0003 2.4986 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2335 -2.3998 -4.2459 33 1 3.1300 -0.7208 1.2493 34 1 0.4414 -2.1662 1.2732 35 1 1.8756 -2.6711 0.3465 36 1 3.1571 -2.9723 2.4136 37 1 1.6341 -3.8900 2.5391 38 1 0.0410 -4.3411 3.7608 39 1 1.5978 -4.7713 4.5088 40 1 0.9587 -4.1011 7.6443 41 1 0.1829 -5.7026 7.6024 42 1 1.7006 -5.4253 6.7145 43 1 -1.7102 -6.9744 6.0318 44 1 -3.2214 -6.3254 5.3506 45 1 -1.7568 -6.4132 4.3433 46 1 3.1555 -0.6043 3.7815 47 1 1.6318 -0.2559 4.6383 48 1 1.8731 1.0347 2.4871 49 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713678317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:43 Heat of formation + Delta-G solvation = -83.361573 kcal Electronic energy + Delta-G solvation = -30032.494803 eV Core-core repulsion = 25929.644051 eV Total energy + Delta-G solvation = -4102.850752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.30447 -38.19289 -37.39264 -36.27393 -36.01494 -35.32861 -32.96417 -31.37055 -30.53506 -29.88759 -29.07244 -28.03470 -25.82085 -24.98508 -23.66383 -23.10425 -21.56155 -19.87025 -19.07020 -18.48080 -18.00808 -17.52578 -17.14106 -16.68388 -16.42627 -15.70693 -15.33317 -14.87093 -14.79823 -14.37827 -14.29255 -13.91475 -13.77744 -13.75488 -13.59805 -13.39570 -13.34166 -12.98183 -12.89737 -12.63103 -12.47636 -12.31228 -12.17153 -12.02256 -11.86521 -11.80041 -11.55105 -11.35053 -11.33224 -11.02389 -10.86383 -10.55735 -10.35316 -10.29501 -10.23124 -10.05605 -9.69963 -9.53780 -9.19925 -8.90681 -8.57488 -6.94371 -5.77407 -3.04526 -0.12347 2.21964 2.57334 2.98802 3.42511 3.48978 3.50484 3.62620 3.77543 4.13404 4.37608 4.42861 4.50923 4.58819 4.79787 4.85130 4.93842 5.09017 5.12757 5.15351 5.22920 5.23439 5.40468 5.42942 5.51169 5.56221 5.61402 5.66299 5.84201 5.84276 6.00143 6.01151 6.02098 6.15374 6.25609 6.31265 6.35599 6.51486 6.60494 6.71204 6.79404 6.95448 7.19209 7.39554 7.71718 8.14858 8.42645 9.53775 10.12419 10.47031 11.45734 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002371 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.010855 B =11808.121046 C =12201.548810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.725 5.725 5 C -0.233 4.233 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.089 4.089 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.499 3.501 18 O -0.534 6.534 19 C 0.106 3.894 20 N -0.986 5.986 21 C 0.097 3.903 22 S 2.609 3.391 23 C -0.676 4.676 24 O -0.950 6.950 25 O -0.943 6.943 26 C 0.113 3.887 27 C -0.129 4.129 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.383 0.617 32 H 0.253 0.747 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -11.276 20.293 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.108 4.108 14 C -0.169 4.169 15 C -0.018 4.018 16 N -0.341 5.341 17 C 0.285 3.715 18 O -0.411 6.411 19 C -0.023 4.023 20 N -0.823 5.823 21 C -0.049 4.049 22 S 2.700 3.300 23 C -0.825 4.825 24 O -0.940 6.940 25 O -0.933 6.933 26 C -0.009 4.009 27 C -0.168 4.168 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.218 0.782 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.962 -10.107 20.954 23.787 hybrid contribution 0.364 -0.566 -1.439 1.589 sum -4.598 -10.673 19.514 22.713 Atomic orbital electron populations 1.22529 0.99498 1.00895 0.99789 1.20196 0.91768 0.95184 0.86066 0.93646 1.42499 1.78155 1.10770 1.05264 1.19302 1.35949 0.93870 0.87275 0.91256 1.24703 1.02486 0.95991 0.97956 1.69657 1.51537 1.08605 1.28629 0.86148 0.77235 0.78827 0.84196 1.20635 1.21975 1.21976 1.21372 1.00275 0.94500 0.94686 1.22010 1.01532 0.96414 0.96976 1.21892 1.00562 0.94662 0.84675 1.48167 1.57190 1.11203 1.17575 1.21012 0.77591 0.90009 0.82876 1.90681 1.53536 1.65257 1.31585 1.21209 1.00205 0.93582 0.87346 1.57166 1.24723 1.81215 1.19172 1.21490 0.96537 1.00577 0.86255 1.05136 0.72853 0.77129 0.74859 1.30617 1.12459 1.26228 1.13224 1.93607 1.82477 1.85078 1.32819 1.93654 1.81118 1.55621 1.62920 1.21620 0.99573 0.80069 0.99625 1.22021 1.01728 0.99281 0.93774 0.93198 0.93304 0.94325 0.78231 0.93683 0.91072 0.91096 0.89498 0.90893 0.90298 0.87031 0.87136 0.91649 0.91011 0.91033 0.85412 0.85323 0.85217 0.91649 0.89369 0.90843 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 8.79 37.16 0.33 -2.69 16 2 C 0.18 3.37 2.72 -67.93 -0.18 3.18 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.26 5.04 -53.43 -0.27 -17.52 16 5 C -0.23 -6.30 9.93 -15.06 -0.15 -6.45 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -27.37 13.06 55.49 0.72 -26.65 16 9 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 C -0.09 -1.35 2.14 -90.58 -0.19 -1.54 16 14 C -0.13 -1.81 4.81 -26.61 -0.13 -1.94 16 15 C 0.10 1.10 6.34 -3.71 -0.02 1.08 16 16 N -0.61 -7.37 2.97 -172.77 -0.51 -7.88 16 17 C 0.50 6.45 7.76 -10.98 -0.09 6.37 16 18 O -0.53 -8.91 15.83 5.55 0.09 -8.83 16 19 C 0.11 0.90 4.11 -5.19 -0.02 0.88 16 20 N -0.99 -8.48 2.61 -123.05 -0.32 -8.80 16 21 C 0.10 0.66 10.22 59.84 0.61 1.27 16 22 S 2.61 24.85 5.96 -107.50 -0.64 24.20 16 23 C -0.68 -3.05 10.99 101.05 1.11 -1.93 16 24 O -0.95 -12.13 17.09 -57.54 -0.98 -13.12 16 25 O -0.94 -12.88 16.99 -57.54 -0.98 -13.86 16 26 C 0.11 1.42 6.43 -3.71 -0.02 1.40 16 27 C -0.13 -1.72 4.96 -26.62 -0.13 -1.85 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.88 6.46 -51.93 -0.34 0.54 16 30 H 0.04 0.61 6.46 -51.93 -0.34 0.27 16 31 H 0.38 9.45 6.04 -40.82 -0.25 9.20 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 35 H 0.09 1.35 6.46 -51.93 -0.34 1.01 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 38 H 0.11 0.78 7.15 -51.93 -0.37 0.41 16 39 H 0.11 0.55 7.77 -51.93 -0.40 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.35 7.79 -51.92 -0.40 -0.06 16 42 H 0.07 0.31 7.94 -51.93 -0.41 -0.10 16 43 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -37.98 394.66 -8.92 -46.90 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.96 Total: 5.28 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 1.01 Total: -2.76 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.38 Total: -60.86 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.87 Total: -35.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 24.85 SS G_CDS: -0.64 Total: 24.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.98 -8.92 -46.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713678317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.465 kcal (2) G-P(sol) polarization free energy of solvation -37.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds