Wall clock time and date at job start Wed Apr 1 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 N 1.46500 * 109.46662 * 180.02562 * 19 17 16 21 21 C 1.46493 * 120.00178 * 274.99715 * 20 19 17 22 22 S 1.65600 * 120.00085 * 95.00522 * 20 19 17 23 23 C 1.81400 * 104.45088 * 89.99195 * 22 20 19 24 24 O 1.42099 * 104.28047 * 206.06671 * 22 20 19 25 25 O 1.42107 * 104.27469 * 333.92438 * 22 20 19 26 26 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 27 27 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 35 35 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 36 36 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 37 37 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 38 38 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 39 39 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 40 40 H 1.09001 * 109.47208 * 90.00767 * 21 20 19 41 41 H 1.09011 * 109.47469 * 210.00663 * 21 20 19 42 42 H 1.09006 * 109.47304 * 330.00548 * 21 20 19 43 43 H 1.08996 * 109.46891 * 60.00459 * 23 22 20 44 44 H 1.09007 * 109.47215 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.47599 * 300.00094 * 23 22 20 46 46 H 1.09005 * 109.58831 * 293.82980 * 26 16 15 47 47 H 1.09001 * 109.58907 * 173.40185 * 26 16 15 48 48 H 1.09000 * 109.50066 * 301.34096 * 27 13 2 49 49 H 1.09007 * 109.49775 * 61.40191 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 7 -0.0078 -4.5749 5.8443 21 6 0.7575 -4.9767 7.0270 22 16 -1.6632 -4.5714 5.8912 23 6 -2.1349 -6.2374 5.3503 24 8 -1.9745 -4.3864 7.2653 25 8 -2.0392 -3.6062 4.9184 26 6 2.0706 -0.7041 3.7469 27 6 1.5298 0.0003 2.4986 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2335 -2.3998 -4.2459 33 1 3.1300 -0.7208 1.2493 34 1 0.4414 -2.1662 1.2732 35 1 1.8756 -2.6711 0.3465 36 1 3.1571 -2.9723 2.4136 37 1 1.6341 -3.8900 2.5391 38 1 0.0410 -4.3411 3.7608 39 1 1.5978 -4.7713 4.5088 40 1 0.9587 -4.1011 7.6443 41 1 0.1829 -5.7026 7.6024 42 1 1.7006 -5.4253 6.7145 43 1 -1.7102 -6.9744 6.0318 44 1 -3.2214 -6.3254 5.3506 45 1 -1.7568 -6.4132 4.3433 46 1 3.1555 -0.6043 3.7815 47 1 1.6318 -0.2559 4.6383 48 1 1.8731 1.0347 2.4871 49 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713678317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:42 Heat of formation + Delta-G solvation = -112.772687 kcal Electronic energy + Delta-G solvation = -30033.770165 eV Core-core repulsion = 25929.644051 eV Total energy + Delta-G solvation = -4104.126114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29744 -39.37508 -38.21361 -37.11622 -36.90703 -36.54353 -34.64613 -32.66277 -31.87786 -30.30856 -30.17450 -29.30922 -26.79010 -26.17688 -25.22512 -24.18392 -22.82840 -20.95757 -19.95508 -19.54324 -19.23741 -18.68999 -18.30226 -17.45134 -17.20656 -16.72002 -16.55038 -16.27891 -15.88986 -15.55136 -15.42974 -15.23057 -15.01834 -14.49883 -14.43264 -14.19274 -14.07323 -13.97863 -13.80583 -13.75595 -13.61538 -13.28554 -13.15882 -13.06213 -12.94877 -12.87746 -12.77723 -12.63654 -12.56825 -12.49379 -12.09077 -11.98402 -11.92789 -11.73102 -11.57345 -11.29053 -11.15963 -11.02716 -10.85834 -9.93761 -9.59742 -8.93523 -7.90191 -5.15843 -0.75232 1.48489 1.49531 1.58442 1.58579 1.64739 2.10184 2.59141 3.01703 3.14264 3.43355 3.54069 3.64085 3.80787 3.87747 3.98060 4.08684 4.16890 4.18094 4.27161 4.30387 4.37128 4.43075 4.47246 4.58737 4.68846 4.69793 4.75608 4.83200 4.90166 4.90463 4.97992 5.00445 5.02886 5.07980 5.12627 5.15254 5.29645 5.38738 5.42463 5.47580 5.57514 5.65738 5.73620 6.34195 6.46714 7.20691 7.40855 8.18530 8.43350 9.33355 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002371 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.010855 B =11808.121046 C =12201.548810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.036 0.964 4 N -0.733 5.733 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.073 4.073 8 N -0.965 5.965 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.294 1.294 12 H -0.295 1.295 13 C -0.079 4.079 14 C -0.128 4.128 15 C 0.109 3.891 16 N -0.608 5.608 17 C 0.488 3.512 18 O -0.583 6.583 19 C 0.102 3.898 20 N -0.988 5.988 21 C 0.091 3.909 22 S 2.596 3.404 23 C -0.641 4.641 24 O -0.998 6.998 25 O -0.998 6.998 26 C 0.114 3.886 27 C -0.120 4.120 28 H 0.028 0.972 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.031 0.969 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -13.565 20.453 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.064 3.936 3 H 0.054 0.946 4 N -0.374 5.374 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.221 1.221 12 H -0.223 1.223 13 C -0.099 4.099 14 C -0.166 4.166 15 C -0.013 4.013 16 N -0.341 5.341 17 C 0.276 3.724 18 O -0.463 6.463 19 C -0.027 4.027 20 N -0.824 5.824 21 C -0.054 4.054 22 S 2.694 3.306 23 C -0.795 4.795 24 O -0.989 6.989 25 O -0.988 6.988 26 C -0.008 4.008 27 C -0.158 4.158 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.211 0.789 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.050 0.950 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.175 0.825 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.651 -12.327 21.147 24.916 hybrid contribution 0.227 0.150 -1.448 1.474 sum -4.424 -12.177 19.699 23.578 Atomic orbital electron populations 1.22384 0.98590 1.00848 0.99833 1.20393 0.92232 0.94781 0.86186 0.94637 1.42649 1.78289 1.10641 1.05851 1.19602 1.34508 0.93963 0.88512 0.91420 1.25400 1.03369 0.96895 1.00900 1.69782 1.52988 1.09803 1.29086 0.85202 0.76747 0.78094 0.80510 1.19662 1.22107 1.22279 1.21226 0.99919 0.95364 0.93346 1.21923 1.01016 0.95571 0.98074 1.21997 1.01573 0.95552 0.82156 1.48285 1.56846 1.10991 1.17982 1.21989 0.76508 0.91891 0.82059 1.90663 1.55324 1.66793 1.33477 1.21523 1.02493 0.90784 0.87904 1.57024 1.24283 1.81341 1.19740 1.21644 0.98256 0.99727 0.85743 1.05157 0.73016 0.79065 0.73382 1.30310 1.13610 1.20552 1.15054 1.93541 1.83207 1.86870 1.35247 1.93581 1.82026 1.59639 1.63584 1.21541 1.00272 0.80758 0.98262 1.21913 1.00881 0.99748 0.93281 0.95266 0.93391 0.92082 0.78866 0.94127 0.91421 0.91895 0.91210 0.89467 0.86552 0.85232 0.82615 0.95042 0.89102 0.87859 0.82487 0.83888 0.82661 0.90164 0.90811 0.90052 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.64 8.79 71.98 0.63 -5.01 16 2 C 0.17 6.53 2.72 44.99 0.12 6.66 16 3 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 4 N -0.73 -35.12 5.04 -322.94 -1.63 -36.75 16 5 C -0.23 -12.70 9.93 84.03 0.83 -11.87 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 8 N -0.97 -56.88 13.06 21.65 0.28 -56.60 16 9 Si 0.96 45.64 29.55 68.60 2.03 47.67 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 13 C -0.08 -2.34 2.14 -10.77 -0.02 -2.37 16 14 C -0.13 -3.36 4.81 30.67 0.15 -3.21 16 15 C 0.11 1.99 6.34 86.37 0.55 2.54 16 16 N -0.61 -13.76 2.97 -818.90 -2.43 -16.19 16 17 C 0.49 12.03 7.76 87.66 0.68 12.71 16 18 O -0.58 -19.86 15.83 -3.04 -0.05 -19.91 16 19 C 0.10 1.42 4.11 85.63 0.35 1.78 16 20 N -0.99 -15.09 2.61 -543.22 -1.42 -16.50 16 21 C 0.09 1.09 10.22 127.77 1.31 2.39 16 22 S 2.60 46.95 5.96 -56.49 -0.34 46.61 16 23 C -0.64 -3.05 10.99 113.37 1.25 -1.81 16 24 O -1.00 -26.04 17.09 -127.65 -2.18 -28.22 16 25 O -1.00 -27.50 16.99 -127.65 -2.17 -29.67 16 26 C 0.11 2.79 6.43 86.36 0.56 3.34 16 27 C -0.12 -3.11 4.96 30.67 0.15 -2.95 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.72 6.46 -2.39 -0.02 1.70 16 30 H 0.06 1.90 6.46 -2.39 -0.02 1.89 16 31 H 0.38 18.80 6.04 -92.71 -0.56 18.24 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 1.75 6.51 -2.38 -0.02 1.74 16 35 H 0.07 2.12 6.46 -2.39 -0.02 2.10 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 1.27 5.93 -2.39 -0.01 1.26 16 38 H 0.13 1.35 7.15 -2.39 -0.02 1.34 16 39 H 0.16 0.74 7.77 -2.39 -0.02 0.72 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.70 7.79 -2.38 -0.02 0.68 16 42 H 0.10 0.55 7.94 -2.38 -0.02 0.53 16 43 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.07 2.04 7.00 -2.39 -0.02 2.02 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.06 1.70 6.51 -2.38 -0.02 1.68 16 Total: -1.00 -86.89 394.66 -0.49 -87.38 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.39 Total: 23.63 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 7.02 Total: -1.44 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.20 Total: -126.04 kcal Atomic # 8 Polarization: -73.40 SS G_CDS: -4.40 Total: -77.80 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.34 Total: 46.61 kcal Total: -86.89 -0.49 -87.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713678317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.397 kcal (2) G-P(sol) polarization free energy of solvation -86.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds