Wall clock time and date at job start Wed Apr 1 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65599 * 120.00104 * 2 1 4 4 O 1.42093 * 104.27795 * 308.93011 * 3 2 1 5 5 O 1.42109 * 104.27569 * 181.07217 * 3 2 1 6 6 C 1.81401 * 104.44728 * 65.00072 * 3 2 1 7 7 C 1.52996 * 109.46960 * 179.97438 * 6 3 2 8 8 C 1.50696 * 109.47451 * 180.02562 * 7 6 3 9 9 O 1.21284 * 119.99947 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00521 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47132 * 325.00468 * 11 10 8 13 13 C 1.53001 * 109.46573 * 85.00153 * 11 10 8 14 14 C 1.53000 * 109.46935 * 205.00120 * 11 10 8 15 15 H 1.08998 * 109.49804 * 60.06614 * 14 11 10 16 16 C 1.53039 * 109.52025 * 180.14903 * 14 11 10 17 17 C 1.53358 * 109.60526 * 181.33930 * 16 14 11 18 18 C 1.53190 * 109.15073 * 298.71334 * 17 16 14 19 19 N 1.46934 * 108.89394 * 54.57373 * 18 17 16 20 20 C 1.36935 * 120.62776 * 126.33972 * 19 18 17 21 21 H 1.08003 * 120.00334 * 331.82288 * 20 19 18 22 22 C 1.38816 * 120.00109 * 151.82327 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.07479 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.07501 * 22 20 19 25 25 H 1.48500 * 109.47341 * 59.99642 * 24 22 20 26 26 H 1.48496 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46651 * 299.99824 * 24 22 20 28 28 C 1.46927 * 118.73962 * 306.32403 * 19 18 17 29 29 H 1.08998 * 109.46699 * 299.99787 * 1 2 3 30 30 H 1.08998 * 109.46835 * 59.99734 * 1 2 3 31 31 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99557 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.46622 * 60.00269 * 6 3 2 34 34 H 1.08990 * 109.47299 * 299.99674 * 6 3 2 35 35 H 1.09001 * 109.47285 * 60.00144 * 7 6 3 36 36 H 1.09005 * 109.47602 * 300.00281 * 7 6 3 37 37 H 0.96993 * 119.99435 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47429 * 299.99488 * 13 11 10 39 39 H 1.08998 * 109.47134 * 60.00317 * 13 11 10 40 40 H 1.09004 * 109.47085 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.46381 * 301.35321 * 16 14 11 42 42 H 1.09004 * 109.45867 * 61.33034 * 16 14 11 43 43 H 1.08993 * 109.68345 * 178.74904 * 17 16 14 44 44 H 1.09002 * 109.46954 * 58.54958 * 17 16 14 45 45 H 1.09005 * 109.58787 * 294.71926 * 18 17 16 46 46 H 1.09000 * 109.58862 * 174.43601 * 18 17 16 47 47 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58430 * 173.39008 * 28 19 18 49 49 H 1.09000 * 109.58086 * 293.67640 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7190 2.1703 -1.0712 5 8 3.6608 1.0491 -0.0258 6 6 1.8765 2.1973 1.5921 7 6 2.5900 3.5451 1.7137 8 6 2.2445 4.1789 3.0366 9 8 1.5003 3.6089 3.8061 10 7 2.7616 5.3797 3.3641 11 6 2.4252 5.9960 4.6499 12 1 1.3946 5.7544 4.9101 13 6 3.3636 5.4604 5.7331 14 6 2.5820 7.5143 4.5443 15 1 1.9128 7.8964 3.7735 16 6 2.2344 8.1590 5.8880 17 6 2.3587 9.6833 5.7749 18 6 3.8048 10.0448 5.4217 19 7 4.1951 9.3141 4.2081 20 6 4.7031 9.9809 3.1253 21 1 4.4217 11.0075 2.9425 22 6 5.5796 9.3373 2.2625 23 7 6.1821 8.2302 2.6416 24 14 5.9042 10.0425 0.5635 25 1 6.4689 11.4097 0.6946 26 1 6.8701 9.1744 -0.1565 27 1 4.6310 10.1038 -0.1984 28 6 4.0303 7.8544 4.1787 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 2.1959 1.5429 2.4032 34 1 0.7989 2.3496 1.6510 35 1 2.2711 4.1997 0.9026 36 1 3.6677 3.3925 1.6549 37 1 3.3558 5.8361 2.7482 38 1 3.2518 4.3787 5.8084 39 1 4.3941 5.7020 5.4730 40 1 3.1137 5.9192 6.6898 41 1 1.2124 7.8981 6.1625 42 1 2.9201 7.7953 6.6535 43 1 2.0900 10.1451 6.7249 44 1 1.6917 10.0451 4.9923 45 1 4.4629 9.7647 6.2443 46 1 3.8801 11.1173 5.2425 47 1 6.7948 7.7807 2.0389 48 1 4.2518 7.4818 3.1786 49 1 4.7085 7.3956 4.8982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714150087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:42 Heat of formation + Delta-G solvation = -99.581336 kcal Electronic energy + Delta-G solvation = -29665.374448 eV Core-core repulsion = 25561.820354 eV Total energy + Delta-G solvation = -4103.554094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.88872 -38.05816 -37.34732 -36.20638 -35.33618 -35.15881 -33.39687 -33.07659 -31.27440 -29.91966 -28.24384 -26.35335 -25.63780 -25.31892 -23.51346 -22.26019 -20.66031 -20.05484 -19.59992 -18.66740 -18.20230 -17.41179 -16.81330 -16.62563 -16.07752 -15.99019 -15.59583 -14.99799 -14.88591 -14.30358 -14.20351 -13.99180 -13.81773 -13.61264 -13.56129 -13.19224 -13.03179 -12.76131 -12.58549 -12.38078 -12.33594 -12.23920 -12.20944 -11.95074 -11.79057 -11.67407 -11.55199 -11.12788 -11.05691 -10.86276 -10.64657 -10.47810 -10.21681 -10.19074 -9.97805 -9.94931 -9.75203 -9.54781 -9.44150 -8.80755 -8.52210 -6.70860 -5.85323 -3.27408 -0.03512 2.41889 2.71136 3.26445 3.34817 3.41672 3.42699 3.58599 3.95401 4.16872 4.44675 4.56337 4.59822 4.79763 5.02548 5.08966 5.19017 5.25915 5.26695 5.33338 5.36651 5.42269 5.53076 5.55419 5.55556 5.66831 5.75204 5.86433 6.03637 6.17182 6.24964 6.25691 6.41122 6.45843 6.50396 6.54741 6.63947 6.75861 6.80657 6.85613 6.98203 7.25217 7.51912 7.72998 7.73794 8.34760 8.38797 9.15583 9.78357 10.35801 11.22869 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002937 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.549556 B = 9530.875096 C =11320.174048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.614 3.386 4 O -0.953 6.953 5 O -0.955 6.955 6 C -0.608 4.608 7 C -0.139 4.139 8 C 0.522 3.478 9 O -0.549 6.549 10 N -0.714 5.714 11 C 0.152 3.848 12 H 0.078 0.922 13 C -0.165 4.165 14 C -0.124 4.124 15 H 0.068 0.932 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.900 3.100 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.177 3.823 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.410 0.590 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.255 0.745 48 H 0.084 0.916 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -14.576 0.041 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.883 5.883 3 S 2.705 3.295 4 O -0.943 6.943 5 O -0.945 6.945 6 C -0.737 4.737 7 C -0.181 4.181 8 C 0.307 3.693 9 O -0.428 6.428 10 N -0.366 5.366 11 C 0.048 3.952 12 H 0.096 0.904 13 C -0.223 4.223 14 C -0.145 4.145 15 H 0.087 0.913 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.730 3.270 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.051 3.949 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.247 0.753 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.111 -14.573 -0.214 18.326 hybrid contribution 0.316 0.142 -0.484 0.595 sum -10.795 -14.430 -0.698 18.035 Atomic orbital electron populations 1.21525 0.78726 1.04268 1.02111 1.55399 1.16005 1.24650 1.92276 1.04964 0.73741 0.73910 0.76863 1.93613 1.78804 1.72199 1.49659 1.93627 1.32528 1.81154 1.87207 1.30356 1.11722 1.07769 1.23880 1.21382 1.02975 0.94721 0.99002 1.20091 0.80215 0.81420 0.87615 1.90656 1.37034 1.62783 1.52298 1.46245 1.49534 1.19848 1.20984 1.20974 0.98916 0.92900 0.82433 0.90431 1.22261 1.01065 1.00484 0.98519 1.22142 1.02863 0.91428 0.98020 0.91327 1.21479 0.99753 0.95921 0.96787 1.22056 0.99973 0.95406 0.99888 1.20923 0.91830 0.95906 0.89597 1.44009 1.73248 1.02471 1.11701 1.19158 1.20249 0.97490 1.01217 0.91789 1.25023 0.96323 0.98411 0.99824 1.70017 1.29610 1.20108 1.35107 0.86403 0.77675 0.78446 0.84473 1.20911 1.21521 1.21014 1.20865 0.88361 0.84340 1.01379 0.92049 0.91273 0.90000 0.74866 0.84128 0.84383 0.87169 0.87031 0.75342 0.93099 0.91138 0.91687 0.93551 0.92157 0.93057 0.92486 0.96510 0.92960 0.93546 0.89779 0.95604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.03 59.85 0.66 1.06 16 2 N -1.12 -7.40 6.08 -16.63 -0.10 -7.50 16 3 S 2.61 25.00 5.46 -107.50 -0.59 24.42 16 4 O -0.95 -12.28 17.73 -57.54 -1.02 -13.30 16 5 O -0.96 -12.27 18.08 -57.54 -1.04 -13.31 16 6 C -0.61 -5.49 5.31 37.16 0.20 -5.29 16 7 C -0.14 -1.55 5.71 -27.89 -0.16 -1.71 16 8 C 0.52 7.55 7.79 -10.99 -0.09 7.46 16 9 O -0.55 -9.20 15.64 5.55 0.09 -9.12 16 10 N -0.71 -10.85 5.00 -53.80 -0.27 -11.12 16 11 C 0.15 2.40 2.41 -67.93 -0.16 2.24 16 12 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 13 C -0.17 -2.52 8.79 37.16 0.33 -2.19 16 14 C -0.12 -2.16 2.33 -90.50 -0.21 -2.37 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.10 -1.61 4.78 -26.53 -0.13 -1.74 16 17 C -0.13 -2.23 6.11 -26.45 -0.16 -2.39 16 18 C 0.14 2.90 6.50 -3.71 -0.02 2.88 16 19 N -0.59 -14.05 2.99 -172.31 -0.52 -14.57 16 20 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 21 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -24.53 11.20 55.49 0.62 -23.91 16 24 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.18 3.79 4.08 -3.71 -0.02 3.77 16 29 H 0.06 0.24 7.73 -51.93 -0.40 -0.16 16 30 H 0.07 0.39 8.04 -51.93 -0.42 -0.03 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.42 2.08 8.92 -34.47 -0.31 1.78 16 33 H 0.14 1.16 8.10 -51.92 -0.42 0.74 16 34 H 0.14 1.10 7.73 -51.93 -0.40 0.70 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.41 6.31 6.97 -40.82 -0.28 6.02 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.17 6.32 -51.93 -0.33 0.84 16 40 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 47 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 48 H 0.08 1.96 4.64 -51.93 -0.24 1.72 16 49 H 0.03 0.59 6.19 -51.93 -0.32 0.27 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -34.91 395.02 -9.85 -44.76 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.96 Total: 6.85 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.01 Total: -5.04 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.26 Total: -57.10 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.97 Total: -35.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Atomic # 16 Polarization: 25.00 SS G_CDS: -0.59 Total: 24.42 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.91 -9.85 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714150087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.825 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds