Wall clock time and date at job start Wed Apr 1 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65599 * 120.00104 * 2 1 4 4 O 1.42093 * 104.27795 * 308.93011 * 3 2 1 5 5 O 1.42109 * 104.27569 * 181.07217 * 3 2 1 6 6 C 1.81401 * 104.44728 * 65.00072 * 3 2 1 7 7 C 1.52996 * 109.46960 * 179.97438 * 6 3 2 8 8 C 1.50696 * 109.47451 * 180.02562 * 7 6 3 9 9 O 1.21284 * 119.99947 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00521 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47132 * 325.00468 * 11 10 8 13 13 C 1.53001 * 109.46573 * 85.00153 * 11 10 8 14 14 C 1.53000 * 109.46935 * 205.00120 * 11 10 8 15 15 H 1.08998 * 109.49804 * 60.06614 * 14 11 10 16 16 C 1.53039 * 109.52025 * 180.14903 * 14 11 10 17 17 C 1.53358 * 109.60526 * 181.33930 * 16 14 11 18 18 C 1.53190 * 109.15073 * 298.71334 * 17 16 14 19 19 N 1.46934 * 108.89394 * 54.57373 * 18 17 16 20 20 C 1.36935 * 120.62776 * 126.33972 * 19 18 17 21 21 H 1.08003 * 120.00334 * 331.82288 * 20 19 18 22 22 C 1.38816 * 120.00109 * 151.82327 * 20 19 18 23 23 N 1.31624 * 119.99356 * 343.07479 * 22 20 19 24 24 Si 1.86793 * 120.00395 * 163.07501 * 22 20 19 25 25 H 1.48500 * 109.47341 * 59.99642 * 24 22 20 26 26 H 1.48496 * 109.47062 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46651 * 299.99824 * 24 22 20 28 28 C 1.46927 * 118.73962 * 306.32403 * 19 18 17 29 29 H 1.08998 * 109.46699 * 299.99787 * 1 2 3 30 30 H 1.08998 * 109.46835 * 59.99734 * 1 2 3 31 31 H 1.08995 * 109.47241 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99557 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.46622 * 60.00269 * 6 3 2 34 34 H 1.08990 * 109.47299 * 299.99674 * 6 3 2 35 35 H 1.09001 * 109.47285 * 60.00144 * 7 6 3 36 36 H 1.09005 * 109.47602 * 300.00281 * 7 6 3 37 37 H 0.96993 * 119.99435 * 0.02562 * 10 8 7 38 38 H 1.08998 * 109.47429 * 299.99488 * 13 11 10 39 39 H 1.08998 * 109.47134 * 60.00317 * 13 11 10 40 40 H 1.09004 * 109.47085 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.46381 * 301.35321 * 16 14 11 42 42 H 1.09004 * 109.45867 * 61.33034 * 16 14 11 43 43 H 1.08993 * 109.68345 * 178.74904 * 17 16 14 44 44 H 1.09002 * 109.46954 * 58.54958 * 17 16 14 45 45 H 1.09005 * 109.58787 * 294.71926 * 18 17 16 46 46 H 1.09000 * 109.58862 * 174.43601 * 18 17 16 47 47 H 0.96997 * 119.99488 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.58430 * 173.39008 * 28 19 18 49 49 H 1.09000 * 109.58086 * 293.67640 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7190 2.1703 -1.0712 5 8 3.6608 1.0491 -0.0258 6 6 1.8765 2.1973 1.5921 7 6 2.5900 3.5451 1.7137 8 6 2.2445 4.1789 3.0366 9 8 1.5003 3.6089 3.8061 10 7 2.7616 5.3797 3.3641 11 6 2.4252 5.9960 4.6499 12 1 1.3946 5.7544 4.9101 13 6 3.3636 5.4604 5.7331 14 6 2.5820 7.5143 4.5443 15 1 1.9128 7.8964 3.7735 16 6 2.2344 8.1590 5.8880 17 6 2.3587 9.6833 5.7749 18 6 3.8048 10.0448 5.4217 19 7 4.1951 9.3141 4.2081 20 6 4.7031 9.9809 3.1253 21 1 4.4217 11.0075 2.9425 22 6 5.5796 9.3373 2.2625 23 7 6.1821 8.2302 2.6416 24 14 5.9042 10.0425 0.5635 25 1 6.4689 11.4097 0.6946 26 1 6.8701 9.1744 -0.1565 27 1 4.6310 10.1038 -0.1984 28 6 4.0303 7.8544 4.1787 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9500 -0.8401 -0.0004 33 1 2.1959 1.5429 2.4032 34 1 0.7989 2.3496 1.6510 35 1 2.2711 4.1997 0.9026 36 1 3.6677 3.3925 1.6549 37 1 3.3558 5.8361 2.7482 38 1 3.2518 4.3787 5.8084 39 1 4.3941 5.7020 5.4730 40 1 3.1137 5.9192 6.6898 41 1 1.2124 7.8981 6.1625 42 1 2.9201 7.7953 6.6535 43 1 2.0900 10.1451 6.7249 44 1 1.6917 10.0451 4.9923 45 1 4.4629 9.7647 6.2443 46 1 3.8801 11.1173 5.2425 47 1 6.7948 7.7807 2.0389 48 1 4.2518 7.4818 3.1786 49 1 4.7085 7.3956 4.8982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714150087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:40 Heat of formation + Delta-G solvation = -126.441153 kcal Electronic energy + Delta-G solvation = -29666.539177 eV Core-core repulsion = 25561.820354 eV Total energy + Delta-G solvation = -4104.718823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11470 -39.49929 -38.23893 -37.09844 -36.60978 -35.86678 -34.81151 -34.28421 -32.71203 -31.59746 -29.64716 -27.18303 -26.80228 -26.60889 -24.83545 -23.89389 -22.05513 -21.25102 -20.36481 -20.12585 -19.08673 -18.63789 -18.19249 -17.45592 -17.24585 -17.02707 -16.65795 -16.55780 -15.87500 -15.73319 -15.55189 -15.18967 -15.01935 -14.78331 -14.57609 -14.52409 -14.09808 -13.94013 -13.77508 -13.68163 -13.51061 -13.26532 -13.22311 -13.15676 -12.96251 -12.76849 -12.62678 -12.58438 -12.46704 -12.36283 -12.11584 -11.96100 -11.84631 -11.71088 -11.48454 -11.19800 -11.03835 -10.88730 -10.48485 -10.45148 -10.05558 -8.60715 -7.84170 -5.28637 -0.80627 1.48670 1.51242 1.57101 1.57343 1.74521 2.20661 2.53195 2.76490 3.20513 3.28541 3.33256 3.61479 3.78857 3.81167 3.97700 4.05161 4.16996 4.22176 4.32486 4.33249 4.43529 4.46936 4.51215 4.65354 4.66285 4.76995 4.79526 4.86980 4.89318 4.93289 5.01884 5.02659 5.06128 5.18104 5.22100 5.29616 5.43173 5.47629 5.56582 5.58126 5.70579 5.83264 6.10932 6.42823 6.52139 7.16656 7.19808 7.90459 8.42037 9.20740 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002937 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.549556 B = 9530.875096 C =11320.174048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.116 6.116 3 S 2.636 3.364 4 O -0.988 6.988 5 O -0.991 6.991 6 C -0.599 4.599 7 C -0.149 4.149 8 C 0.522 3.478 9 O -0.571 6.571 10 N -0.720 5.720 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.157 4.157 14 C -0.110 4.110 15 H 0.058 0.942 16 C -0.100 4.100 17 C -0.124 4.124 18 C 0.137 3.863 19 N -0.612 5.612 20 C -0.264 4.264 21 H 0.060 0.940 22 C -0.041 4.041 23 N -0.926 5.926 24 Si 0.957 3.043 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.279 1.279 28 C 0.186 3.814 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.426 0.574 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.407 0.593 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.013 0.987 46 H 0.047 0.953 47 H 0.251 0.749 48 H 0.061 0.939 49 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -15.237 0.642 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.878 5.878 3 S 2.728 3.272 4 O -0.978 6.978 5 O -0.981 6.981 6 C -0.729 4.729 7 C -0.190 4.190 8 C 0.308 3.692 9 O -0.451 6.451 10 N -0.371 5.371 11 C 0.052 3.948 12 H 0.101 0.899 13 C -0.215 4.215 14 C -0.130 4.130 15 H 0.076 0.924 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.012 3.988 19 N -0.335 5.335 20 C -0.394 4.394 21 H 0.077 0.923 22 C -0.237 4.237 23 N -0.572 5.572 24 Si 0.786 3.214 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.206 1.206 28 C 0.061 3.939 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.262 0.738 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.244 0.756 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -12.874 -15.236 0.391 19.951 hybrid contribution 0.843 0.363 -0.603 1.098 sum -12.032 -14.873 -0.212 19.131 Atomic orbital electron populations 1.21798 0.77390 1.06108 1.02495 1.55093 1.16807 1.23868 1.91991 1.04082 0.72710 0.73940 0.76432 1.93567 1.79197 1.73469 1.51571 1.93574 1.34965 1.81831 1.87742 1.30291 1.12456 1.06699 1.23455 1.21526 1.04065 0.95886 0.97500 1.20547 0.79424 0.80845 0.88369 1.90638 1.38006 1.63182 1.53285 1.46326 1.49624 1.20322 1.20832 1.20896 0.99241 0.91689 0.82974 0.89884 1.22177 0.99700 1.00569 0.99021 1.21919 0.99475 0.92806 0.98819 0.92396 1.21498 1.01501 0.95137 0.95630 1.21944 0.96884 0.96188 1.01227 1.21088 0.94164 0.95421 0.88175 1.44311 1.73440 1.03445 1.12337 1.19404 1.20110 0.97602 1.02301 0.92268 1.25629 0.96538 0.98990 1.02561 1.70145 1.30181 1.21076 1.35781 0.85504 0.77357 0.77596 0.80935 1.20774 1.21880 1.20562 1.20679 0.90532 0.83131 0.99573 0.90629 0.92050 0.87505 0.73773 0.83048 0.82952 0.85813 0.86049 0.75627 0.93029 0.93071 0.90184 0.90718 0.91732 0.89896 0.93006 0.96893 0.93406 0.94001 0.92082 0.97563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.03 127.77 1.41 1.95 16 2 N -1.12 -12.97 6.08 -206.53 -1.25 -14.22 16 3 S 2.64 48.34 5.46 -56.49 -0.31 48.03 16 4 O -0.99 -25.08 17.73 -127.65 -2.26 -27.34 16 5 O -0.99 -25.21 18.08 -127.65 -2.31 -27.51 16 6 C -0.60 -9.89 5.31 71.98 0.38 -9.51 16 7 C -0.15 -3.17 5.71 29.85 0.17 -3.00 16 8 C 0.52 14.60 7.79 87.65 0.68 15.28 16 9 O -0.57 -18.29 15.64 -3.04 -0.05 -18.34 16 10 N -0.72 -21.63 5.00 -442.53 -2.21 -23.84 16 11 C 0.16 4.78 2.41 44.99 0.11 4.89 16 12 H 0.08 2.50 7.58 -2.39 -0.02 2.48 16 13 C -0.16 -4.62 8.79 71.98 0.63 -3.99 16 14 C -0.11 -3.72 2.33 -10.72 -0.02 -3.75 16 15 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.10 -2.92 4.78 30.73 0.15 -2.78 16 17 C -0.12 -3.84 6.11 30.78 0.19 -3.65 16 18 C 0.14 5.46 6.50 86.36 0.56 6.02 16 19 N -0.61 -29.31 2.99 -699.07 -2.09 -31.40 16 20 C -0.26 -14.04 9.58 84.03 0.81 -13.23 16 21 H 0.06 3.13 7.89 -2.91 -0.02 3.11 16 22 C -0.04 -2.19 4.92 84.86 0.42 -1.77 16 23 N -0.93 -51.32 11.20 21.65 0.24 -51.08 16 24 Si 0.96 43.48 29.59 68.60 2.03 45.51 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C 0.19 8.10 4.08 86.36 0.35 8.45 16 29 H 0.08 0.40 7.73 -2.39 -0.02 0.38 16 30 H 0.06 0.60 8.04 -2.39 -0.02 0.59 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.43 3.59 8.92 -96.74 -0.86 2.72 16 33 H 0.15 2.21 8.10 -2.39 -0.02 2.20 16 34 H 0.15 2.10 7.73 -2.40 -0.02 2.08 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.41 12.76 6.97 -92.71 -0.65 12.11 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.71 6.32 -2.39 -0.02 1.69 16 40 H 0.08 2.09 6.46 -2.38 -0.02 2.07 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.86 6.50 -2.38 -0.02 1.85 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 47 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 48 H 0.06 2.93 4.64 -2.39 -0.01 2.92 16 49 H 0.01 0.30 6.19 -2.39 -0.01 0.29 16 Total: -1.00 -74.95 395.02 -2.92 -77.87 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.54 Total: 27.40 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.83 Total: -5.08 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -5.32 Total: -120.54 kcal Atomic # 8 Polarization: -68.58 SS G_CDS: -4.62 Total: -73.20 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 48.34 SS G_CDS: -0.31 Total: 48.03 kcal Total: -74.95 -2.92 -77.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714150087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.570 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds