Wall clock time and date at job start Wed Apr 1 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65600 * 120.00008 * 2 1 4 4 O 1.42101 * 104.27848 * 308.93499 * 3 2 1 5 5 O 1.42095 * 104.28011 * 181.07247 * 3 2 1 6 6 C 1.81399 * 104.44664 * 65.00125 * 3 2 1 7 7 C 1.53007 * 109.47264 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.47124 * 180.02562 * 7 6 3 9 9 O 1.21279 * 120.00106 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99563 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99903 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47017 * 34.99777 * 11 10 8 13 13 C 1.53006 * 109.46943 * 275.00599 * 11 10 8 14 14 C 1.53001 * 109.47565 * 155.00342 * 11 10 8 15 15 H 1.09003 * 109.49412 * 305.06504 * 14 11 10 16 16 C 1.53038 * 109.49935 * 185.00093 * 14 11 10 17 17 C 1.53038 * 109.53543 * 178.68457 * 16 14 11 18 18 C 1.53187 * 109.31399 * 61.36383 * 17 16 14 19 19 N 1.46920 * 108.77916 * 305.36361 * 18 17 16 20 20 C 1.36935 * 120.63554 * 233.58966 * 19 18 17 21 21 H 1.08000 * 120.00344 * 151.82994 * 20 19 18 22 22 C 1.38811 * 119.99910 * 331.82581 * 20 19 18 23 23 N 1.31623 * 120.00121 * 343.09053 * 22 20 19 24 24 Si 1.86805 * 120.00070 * 163.08239 * 22 20 19 25 25 H 1.48494 * 109.46869 * 60.00761 * 24 22 20 26 26 H 1.48506 * 109.46649 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47140 * 300.00261 * 24 22 20 28 28 C 1.46928 * 118.73770 * 53.60774 * 19 18 17 29 29 H 1.09007 * 109.47121 * 59.99714 * 1 2 3 30 30 H 1.09006 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47008 * 299.99848 * 1 2 3 32 32 H 0.97001 * 120.00005 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47170 * 60.00304 * 6 3 2 34 34 H 1.09000 * 109.47505 * 299.99983 * 6 3 2 35 35 H 1.08997 * 109.46533 * 60.00103 * 7 6 3 36 36 H 1.09000 * 109.46948 * 300.00450 * 7 6 3 37 37 H 0.96996 * 120.00341 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.46583 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.46593 * 299.99438 * 13 11 10 40 40 H 1.08997 * 109.47577 * 59.99838 * 13 11 10 41 41 H 1.09002 * 109.46105 * 298.70003 * 16 14 11 42 42 H 1.08994 * 109.45765 * 58.67603 * 16 14 11 43 43 H 1.09000 * 109.49737 * 181.31572 * 17 16 14 44 44 H 1.09000 * 109.49588 * 301.38194 * 17 16 14 45 45 H 1.08997 * 109.58808 * 65.15184 * 18 17 16 46 46 H 1.09004 * 109.58445 * 185.57445 * 18 17 16 47 47 H 0.96993 * 120.00357 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.59054 * 186.60845 * 28 19 18 49 49 H 1.08998 * 109.58521 * 66.17834 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7187 2.1704 -1.0712 5 8 3.6606 1.0493 -0.0258 6 6 1.8764 2.1972 1.5921 7 6 2.5899 3.5452 1.7138 8 6 2.2443 4.1789 3.0367 9 8 1.5009 3.6083 3.8066 10 7 2.7622 5.3792 3.3647 11 6 2.4267 5.9950 4.6509 12 1 2.3212 5.2187 5.4088 13 6 1.1096 6.7627 4.5207 14 6 3.5411 6.9599 5.0607 15 1 4.4951 6.4325 5.0662 16 6 3.2528 7.5087 6.4598 17 6 4.3836 8.4487 6.8839 18 6 4.4560 9.6270 5.9077 19 7 4.5879 9.1021 4.5418 20 6 5.6083 9.5193 3.7295 21 1 5.9871 8.8646 2.9586 22 6 6.1559 10.7838 3.8969 23 7 5.5046 11.6972 4.5853 24 14 7.8174 11.1892 3.1453 25 1 7.7484 11.0204 1.6716 26 1 8.1761 12.5941 3.4659 27 1 8.8480 10.2755 3.7005 28 6 3.6039 8.1213 4.0637 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 2.1958 1.5429 2.4033 34 1 0.7987 2.3496 1.6511 35 1 2.2709 4.1997 0.9027 36 1 3.6675 3.3925 1.6550 37 1 3.3570 5.8353 2.7491 38 1 0.8598 7.2205 5.4779 39 1 1.2151 7.5389 3.7628 40 1 0.3156 6.0754 4.2288 41 1 2.3105 8.0566 6.4479 42 1 3.1834 6.6822 7.1669 43 1 4.1893 8.8210 7.8898 44 1 5.3298 7.9077 6.8726 45 1 3.5456 10.2214 5.9843 46 1 5.3205 10.2465 6.1462 47 1 5.8874 12.5807 4.7026 48 1 3.9062 7.7473 3.0856 49 1 2.6240 8.5930 3.9901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714150088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:44 Heat of formation + Delta-G solvation = -127.467725 kcal Electronic energy + Delta-G solvation = -29182.886264 eV Core-core repulsion = 25078.122926 eV Total energy + Delta-G solvation = -4104.763339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12246 -39.52734 -38.21563 -37.07671 -36.71493 -35.85146 -34.68725 -34.23802 -32.40079 -32.19660 -29.49277 -27.21099 -26.78914 -26.60636 -24.83071 -23.86293 -22.18372 -21.26707 -20.33951 -20.07784 -19.07384 -18.64010 -18.20090 -17.47719 -17.13766 -16.87619 -16.76766 -16.66110 -15.94213 -15.70850 -15.64397 -15.11781 -14.94174 -14.86402 -14.65530 -14.43462 -14.05776 -13.94844 -13.76273 -13.66348 -13.49669 -13.27257 -13.24016 -13.13154 -13.02329 -12.73533 -12.69618 -12.56410 -12.44162 -12.29999 -12.04392 -11.95495 -11.93451 -11.67748 -11.49643 -11.27761 -11.07172 -10.87635 -10.50009 -10.43798 -10.06705 -8.63340 -7.85205 -5.30259 -0.78112 1.47750 1.49925 1.56100 1.59801 1.75855 2.19355 2.52196 2.78685 3.22891 3.29487 3.35365 3.59846 3.81120 3.84177 3.95637 4.00972 4.07352 4.23120 4.35824 4.36552 4.45194 4.49143 4.50420 4.66504 4.67903 4.71506 4.81362 4.87044 4.91368 4.94904 4.99083 5.03808 5.06049 5.15368 5.22592 5.31041 5.36447 5.48447 5.54222 5.60143 5.69553 5.80563 6.11679 6.41109 6.54027 7.17231 7.20374 7.89412 8.40738 9.20611 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.002301 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.613101 B =12166.751714 C =13561.950022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.636 3.364 4 O -0.988 6.988 5 O -0.990 6.990 6 C -0.601 4.601 7 C -0.147 4.147 8 C 0.522 3.478 9 O -0.573 6.573 10 N -0.718 5.718 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.066 0.934 16 C -0.097 4.097 17 C -0.132 4.132 18 C 0.174 3.826 19 N -0.610 5.610 20 C -0.260 4.260 21 H 0.069 0.931 22 C -0.051 4.051 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.280 1.280 28 C 0.149 3.851 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.426 0.574 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.048 0.952 45 H -0.004 1.004 46 H 0.049 0.951 47 H 0.249 0.751 48 H 0.055 0.945 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 -23.296 -4.293 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.879 5.879 3 S 2.729 3.271 4 O -0.978 6.978 5 O -0.980 6.980 6 C -0.732 4.732 7 C -0.188 4.188 8 C 0.308 3.692 9 O -0.453 6.453 10 N -0.370 5.370 11 C 0.053 3.947 12 H 0.100 0.900 13 C -0.218 4.218 14 C -0.119 4.119 15 H 0.085 0.915 16 C -0.135 4.135 17 C -0.171 4.171 18 C 0.048 3.952 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.087 0.913 22 C -0.247 4.247 23 N -0.581 5.581 24 Si 0.792 3.208 25 H -0.200 1.200 26 H -0.223 1.223 27 H -0.206 1.206 28 C 0.024 3.976 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.014 0.986 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.255 -23.064 -4.452 26.047 hybrid contribution 1.044 0.730 0.099 1.278 sum -10.211 -22.334 -4.353 24.940 Atomic orbital electron populations 1.21785 0.77488 1.06038 1.02470 1.55112 1.16774 1.24004 1.92016 1.04077 0.72683 0.73878 0.76459 1.93573 1.79184 1.73432 1.51593 1.93574 1.34894 1.81814 1.87764 1.30306 1.12473 1.07076 1.23308 1.21549 1.04295 0.95614 0.97364 1.20597 0.79451 0.80660 0.88455 1.90665 1.37855 1.63611 1.53144 1.46191 1.49843 1.20260 1.20695 1.20854 0.94201 0.94355 0.85284 0.90042 1.22207 0.96398 1.00145 1.03028 1.21742 0.97559 0.95729 0.96845 0.91542 1.21410 0.98220 0.98638 0.95273 1.22014 0.98522 0.97762 0.98772 1.20603 0.98147 0.92907 0.83497 1.44279 1.29649 1.48628 1.10704 1.19474 1.09546 0.96205 1.13798 0.91343 1.25767 1.02401 0.95272 1.01234 1.70176 1.38158 1.03485 1.46255 0.85405 0.80617 0.76279 0.78532 1.20035 1.22344 1.20602 1.21148 0.91698 0.89311 0.95451 0.92037 0.87680 0.90649 0.73826 0.83185 0.83178 0.85323 0.85445 0.75258 0.90883 0.92185 0.92815 0.91843 0.90792 0.91367 0.93340 0.98611 0.93273 0.94243 0.92674 0.95876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.03 127.77 1.41 1.81 16 2 N -1.12 -10.09 6.08 -206.53 -1.25 -11.35 16 3 S 2.64 38.54 5.46 -56.49 -0.31 38.23 16 4 O -0.99 -21.40 17.73 -127.65 -2.26 -23.67 16 5 O -0.99 -21.28 18.08 -127.65 -2.31 -23.58 16 6 C -0.60 -7.42 5.31 71.98 0.38 -7.04 16 7 C -0.15 -2.21 5.71 29.85 0.17 -2.04 16 8 C 0.52 11.49 7.79 87.66 0.68 12.17 16 9 O -0.57 -15.97 15.64 -3.03 -0.05 -16.02 16 10 N -0.72 -16.07 5.01 -442.53 -2.22 -18.29 16 11 C 0.16 4.00 2.35 44.99 0.11 4.10 16 12 H 0.08 2.15 7.58 -2.39 -0.02 2.13 16 13 C -0.16 -3.95 8.76 71.98 0.63 -3.32 16 14 C -0.10 -2.93 2.27 -10.72 -0.02 -2.96 16 15 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.10 -2.89 4.89 30.62 0.15 -2.74 16 17 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 18 C 0.17 8.19 5.30 86.36 0.46 8.64 16 19 N -0.61 -29.19 2.99 -699.12 -2.09 -31.28 16 20 C -0.26 -13.80 9.58 84.03 0.81 -12.99 16 21 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 22 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 23 N -0.93 -54.71 11.20 21.65 0.24 -54.47 16 24 Si 0.96 44.26 29.59 68.60 2.03 46.29 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.15 5.54 5.26 86.36 0.45 6.00 16 29 H 0.06 0.47 8.04 -2.38 -0.02 0.46 16 30 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.07 0.24 7.73 -2.39 -0.02 0.22 16 32 H 0.43 2.58 8.92 -96.74 -0.86 1.71 16 33 H 0.15 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.15 1.54 7.73 -2.39 -0.02 1.52 16 35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.41 8.22 7.28 -92.71 -0.68 7.55 16 38 H 0.07 1.73 6.60 -2.38 -0.02 1.71 16 39 H 0.06 1.56 6.23 -2.39 -0.01 1.55 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.86 6.63 -2.39 -0.02 1.84 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.05 2.65 6.06 -2.39 -0.01 2.64 16 47 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.05 1.93 6.75 -2.39 -0.02 1.91 16 49 H 0.02 0.89 6.06 -2.39 -0.01 0.88 16 Total: -1.00 -78.28 395.54 -2.96 -81.25 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.57 Total: 18.18 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 5.83 Total: -5.30 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -5.32 Total: -115.39 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -4.62 Total: -63.27 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 38.54 SS G_CDS: -0.31 Total: 38.23 kcal Total: -78.28 -2.96 -81.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714150088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.222 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds