Wall clock time and date at job start Wed Apr 1 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47161 * 2 1 4 4 N 1.46500 * 109.46781 * 181.15640 * 3 2 1 5 5 C 1.34777 * 120.00338 * 84.64450 * 4 3 2 6 6 O 1.21279 * 120.00468 * 175.13406 * 5 4 3 7 7 C 1.50703 * 119.99941 * 355.13071 * 5 4 3 8 8 C 1.53000 * 109.47186 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.46884 * 179.97438 * 8 7 5 10 10 S 1.65594 * 119.99973 * 164.99820 * 9 8 7 11 11 C 1.81406 * 104.44975 * 64.99983 * 10 9 8 12 12 O 1.42095 * 104.28174 * 181.07034 * 10 9 8 13 13 O 1.42105 * 104.27769 * 308.92947 * 10 9 8 14 14 C 1.46510 * 120.00061 * 264.64005 * 4 3 2 15 15 H 1.08998 * 110.88574 * 180.61799 * 14 4 3 16 16 C 1.55153 * 111.00026 * 56.73291 * 14 4 3 17 17 C 1.54315 * 102.94553 * 277.42996 * 16 14 4 18 18 N 1.47028 * 107.27258 * 337.80844 * 17 16 14 19 19 C 1.36933 * 125.64907 * 178.98039 * 18 17 16 20 20 H 1.08004 * 119.99578 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00238 * 359.97325 * 19 18 17 22 22 N 1.31620 * 120.00169 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47540 * 90.00071 * 23 21 19 25 25 H 1.48503 * 109.47313 * 210.00126 * 23 21 19 26 26 H 1.48506 * 109.47080 * 329.99928 * 23 21 19 27 27 C 1.47530 * 108.71061 * 358.94100 * 18 17 16 28 28 H 1.08993 * 109.47723 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46992 * 300.00288 * 1 2 3 30 30 H 1.09000 * 109.47208 * 59.99615 * 1 2 3 31 31 H 1.08996 * 109.47064 * 239.99463 * 2 1 3 32 32 H 1.09001 * 109.46676 * 119.99834 * 2 1 3 33 33 H 1.08992 * 109.47580 * 61.15834 * 3 2 1 34 34 H 1.08995 * 109.47030 * 301.15037 * 3 2 1 35 35 H 1.09002 * 109.46518 * 300.00159 * 7 5 4 36 36 H 1.09001 * 109.47027 * 59.99952 * 7 5 4 37 37 H 1.09001 * 109.46802 * 299.99643 * 8 7 5 38 38 H 1.09001 * 109.47433 * 59.99887 * 8 7 5 39 39 H 0.96994 * 120.00066 * 344.99733 * 9 8 7 40 40 H 1.08998 * 109.47090 * 59.99914 * 11 10 9 41 41 H 1.08996 * 109.47356 * 180.02562 * 11 10 9 42 42 H 1.08999 * 109.47042 * 300.00185 * 11 10 9 43 43 H 1.09003 * 110.72102 * 35.79710 * 16 14 4 44 44 H 1.09006 * 110.71958 * 159.06386 * 16 14 4 45 45 H 1.09002 * 109.88921 * 97.22643 * 17 16 14 46 46 H 1.08998 * 109.88538 * 218.39134 * 17 16 14 47 47 H 0.96992 * 120.00217 * 179.97438 * 22 21 19 48 48 H 1.08987 * 110.37242 * 265.30614 * 27 18 17 49 49 H 1.09001 * 110.40779 * 142.95287 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5047 1.4424 -0.0279 5 6 4.1564 1.3413 -1.2033 6 8 5.3655 1.4299 -1.2359 7 6 3.3827 1.1181 -2.4771 8 6 4.3538 1.0403 -3.6568 9 7 3.6017 0.8227 -4.8949 10 16 4.3324 1.0648 -6.3611 11 6 5.6304 -0.2003 -6.4343 12 8 3.3125 0.7883 -7.3110 13 8 4.9050 2.3613 -6.2574 14 6 4.2612 1.5525 1.2220 15 1 5.3339 1.5484 1.0286 16 6 3.8698 0.4221 2.2101 17 6 2.5871 0.9693 2.8708 18 7 2.6048 2.4311 2.7142 19 6 1.6321 3.2920 3.1477 20 1 1.7392 4.3542 2.9841 21 6 0.5086 2.7995 3.7973 22 7 0.3783 1.5051 3.9971 23 14 -0.8186 3.9739 4.3879 24 1 -1.8273 4.1614 3.3143 25 1 -1.4777 3.4103 5.5934 26 1 -0.2058 5.2839 4.7256 27 6 3.8445 2.8170 2.0137 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6938 1.9503 0.9001 34 1 1.6599 1.9622 -0.8794 35 1 2.8245 0.1847 -2.4042 36 1 2.6893 1.9450 -2.6307 37 1 4.9123 1.9735 -3.7297 38 1 5.0469 0.2132 -3.5029 39 1 2.6756 0.5367 -4.8560 40 1 5.1781 -1.1895 -6.3635 41 1 6.1695 -0.1136 -7.3776 42 1 6.3239 -0.0578 -5.6055 43 1 3.6627 -0.5041 1.6741 44 1 4.6526 0.2718 2.9537 45 1 1.7091 0.5541 2.3759 46 1 2.5757 0.7099 3.9294 47 1 -0.4066 1.1611 4.4513 48 1 4.6182 3.0867 2.7324 49 1 3.6535 3.6457 1.3319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714855094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:30 Heat of formation + Delta-G solvation = -76.096498 kcal Electronic energy + Delta-G solvation = -30291.242037 eV Core-core repulsion = 26188.706322 eV Total energy + Delta-G solvation = -4102.535715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.15831 -37.82651 -37.36830 -36.24790 -35.79823 -34.98340 -32.96922 -31.82263 -30.44149 -29.81669 -29.24152 -27.51550 -25.67745 -24.62752 -23.72616 -21.35623 -20.67111 -20.12002 -19.79366 -18.57205 -17.84549 -17.33255 -17.03407 -16.63266 -16.32589 -15.78109 -15.58276 -14.90509 -14.75863 -14.47973 -14.23165 -13.84600 -13.80369 -13.57315 -13.51686 -13.26171 -12.80744 -12.63217 -12.39975 -12.34859 -12.22861 -12.05042 -12.01161 -11.85853 -11.76868 -11.49399 -11.32825 -11.29316 -11.09437 -11.00362 -10.91843 -10.60763 -10.33760 -10.19697 -10.14068 -9.95219 -9.76577 -9.71428 -9.41723 -8.72006 -8.24864 -6.88177 -5.80723 -3.14816 -0.04094 2.37640 2.79723 3.30453 3.33799 3.40915 3.41374 3.50638 3.89318 4.35462 4.42029 4.52172 4.59710 4.75954 4.86204 5.17401 5.24548 5.28494 5.29788 5.37498 5.40200 5.47424 5.50840 5.60998 5.67756 5.70973 5.82080 5.85675 5.90155 6.09456 6.16704 6.24739 6.31644 6.44087 6.48661 6.57968 6.64201 6.65213 6.68258 6.80055 7.09215 7.48872 7.53629 7.74921 7.80238 8.15267 8.39432 9.12701 9.71766 10.37075 11.29731 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002577 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.212896 B =10860.723915 C =11302.162719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.082 3.918 4 N -0.582 5.582 5 C 0.515 3.485 6 O -0.557 6.557 7 C -0.149 4.149 8 C 0.129 3.871 9 N -1.121 6.121 10 S 2.618 3.382 11 C -0.674 4.674 12 O -0.962 6.962 13 O -0.955 6.955 14 C 0.123 3.877 15 H 0.099 0.901 16 C -0.158 4.158 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.232 4.232 20 H 0.077 0.923 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.418 0.582 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.252 0.748 48 H 0.031 0.969 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -7.148 -16.098 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.040 4.040 4 N -0.312 5.312 5 C 0.302 3.698 6 O -0.436 6.436 7 C -0.190 4.190 8 C 0.003 3.997 9 N -0.881 5.881 10 S 2.709 3.291 11 C -0.824 4.824 12 O -0.953 6.953 13 O -0.945 6.945 14 C 0.018 3.982 15 H 0.117 0.883 16 C -0.197 4.197 17 C 0.043 3.957 18 N -0.329 5.329 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.003 4.003 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.158 0.842 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.048 0.952 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.691 -6.385 -16.607 19.009 hybrid contribution -0.879 -0.235 0.805 1.215 sum 5.812 -6.620 -15.802 18.092 Atomic orbital electron populations 1.21662 0.95178 1.01229 1.02486 1.22039 0.96467 0.97381 1.01701 1.22282 0.78018 0.97392 1.06318 1.47828 1.07520 1.70329 1.05499 1.20331 0.87834 0.76580 0.85055 1.90661 1.14271 1.51784 1.86902 1.21876 0.99479 1.05256 0.92394 1.21067 0.93494 1.03028 0.82138 1.55575 1.24120 1.86523 1.21913 1.04601 0.75693 0.76043 0.72728 1.30527 1.20252 1.19963 1.11628 1.93619 1.55011 1.86501 1.60126 1.93634 1.80135 1.35253 1.85456 1.22248 0.95876 0.97098 0.82930 0.88270 1.23300 1.00955 0.97464 0.97977 1.21396 0.92464 0.83285 0.98561 1.44626 1.18541 1.02747 1.66965 1.19029 0.96545 0.89118 1.31280 0.90501 1.24751 0.98412 0.96082 1.00729 1.69952 1.29123 1.10434 1.46957 0.86178 0.81876 0.79912 0.78135 1.21566 1.21739 1.20791 1.21930 0.90158 0.94479 0.93735 0.93280 0.90934 0.93541 0.93550 0.90556 0.84210 0.92167 0.88030 0.88006 0.89207 0.90972 0.74767 0.85260 0.85409 0.85160 0.91775 0.91509 0.91970 0.94160 0.93725 0.95176 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.14 -1.93 5.30 -26.73 -0.14 -2.07 16 3 C 0.08 1.28 4.16 -4.04 -0.02 1.27 16 4 N -0.58 -9.12 2.53 -163.68 -0.41 -9.53 16 5 C 0.51 7.51 7.63 -10.98 -0.08 7.43 16 6 O -0.56 -9.54 15.37 5.56 0.09 -9.45 16 7 C -0.15 -1.54 4.51 -27.88 -0.13 -1.67 16 8 C 0.13 1.20 5.42 -4.04 -0.02 1.18 16 9 N -1.12 -8.29 5.89 -10.61 -0.06 -8.35 16 10 S 2.62 21.07 6.10 -107.50 -0.66 20.41 16 11 C -0.67 -3.16 10.89 101.05 1.10 -2.06 16 12 O -0.96 -10.73 18.08 -57.54 -1.04 -11.77 16 13 O -0.95 -11.71 17.50 -57.54 -1.01 -12.72 16 14 C 0.12 2.11 3.66 -65.78 -0.24 1.87 16 15 H 0.10 1.70 7.02 -51.93 -0.36 1.33 16 16 C -0.16 -2.75 5.99 -24.90 -0.15 -2.90 16 17 C 0.17 3.60 4.16 -3.07 -0.01 3.59 16 18 N -0.60 -13.72 1.91 -170.00 -0.32 -14.05 16 19 C -0.23 -5.88 9.90 -15.06 -0.15 -6.03 16 20 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 21 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 22 N -0.92 -24.35 10.31 55.49 0.57 -23.78 16 23 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.12 2.43 6.54 -2.47 -0.02 2.41 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.54 6.32 -51.93 -0.33 0.22 16 32 H 0.08 1.21 4.71 -51.93 -0.24 0.97 16 33 H 0.14 2.78 4.32 -51.93 -0.22 2.55 16 34 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 35 H 0.10 0.87 6.35 -51.93 -0.33 0.54 16 36 H 0.10 0.99 7.29 -51.93 -0.38 0.61 16 37 H 0.09 0.97 7.65 -51.93 -0.40 0.58 16 38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.42 2.45 8.62 -34.46 -0.30 2.16 16 40 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 1.04 6.78 -51.93 -0.35 0.69 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.40 4.44 -51.93 -0.23 1.17 16 46 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 47 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 48 H 0.03 0.59 8.14 -51.94 -0.42 0.17 16 49 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -33.32 387.34 -9.27 -42.59 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.66 Total: 3.87 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.41 Total: 1.16 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.23 Total: -55.71 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.96 Total: -33.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 21.07 SS G_CDS: -0.66 Total: 20.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.32 -9.27 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714855094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.502 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds