Wall clock time and date at job start Wed Apr 1 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47161 * 2 1 4 4 N 1.46500 * 109.46781 * 181.15640 * 3 2 1 5 5 C 1.34777 * 120.00338 * 84.64450 * 4 3 2 6 6 O 1.21279 * 120.00468 * 175.13406 * 5 4 3 7 7 C 1.50703 * 119.99941 * 355.13071 * 5 4 3 8 8 C 1.53000 * 109.47186 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.46884 * 179.97438 * 8 7 5 10 10 S 1.65594 * 119.99973 * 164.99820 * 9 8 7 11 11 C 1.81406 * 104.44975 * 64.99983 * 10 9 8 12 12 O 1.42095 * 104.28174 * 181.07034 * 10 9 8 13 13 O 1.42105 * 104.27769 * 308.92947 * 10 9 8 14 14 C 1.46510 * 120.00061 * 264.64005 * 4 3 2 15 15 H 1.08998 * 110.88574 * 180.61799 * 14 4 3 16 16 C 1.55153 * 111.00026 * 56.73291 * 14 4 3 17 17 C 1.54315 * 102.94553 * 277.42996 * 16 14 4 18 18 N 1.47028 * 107.27258 * 337.80844 * 17 16 14 19 19 C 1.36933 * 125.64907 * 178.98039 * 18 17 16 20 20 H 1.08004 * 119.99578 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00238 * 359.97325 * 19 18 17 22 22 N 1.31620 * 120.00169 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47540 * 90.00071 * 23 21 19 25 25 H 1.48503 * 109.47313 * 210.00126 * 23 21 19 26 26 H 1.48506 * 109.47080 * 329.99928 * 23 21 19 27 27 C 1.47530 * 108.71061 * 358.94100 * 18 17 16 28 28 H 1.08993 * 109.47723 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46992 * 300.00288 * 1 2 3 30 30 H 1.09000 * 109.47208 * 59.99615 * 1 2 3 31 31 H 1.08996 * 109.47064 * 239.99463 * 2 1 3 32 32 H 1.09001 * 109.46676 * 119.99834 * 2 1 3 33 33 H 1.08992 * 109.47580 * 61.15834 * 3 2 1 34 34 H 1.08995 * 109.47030 * 301.15037 * 3 2 1 35 35 H 1.09002 * 109.46518 * 300.00159 * 7 5 4 36 36 H 1.09001 * 109.47027 * 59.99952 * 7 5 4 37 37 H 1.09001 * 109.46802 * 299.99643 * 8 7 5 38 38 H 1.09001 * 109.47433 * 59.99887 * 8 7 5 39 39 H 0.96994 * 120.00066 * 344.99733 * 9 8 7 40 40 H 1.08998 * 109.47090 * 59.99914 * 11 10 9 41 41 H 1.08996 * 109.47356 * 180.02562 * 11 10 9 42 42 H 1.08999 * 109.47042 * 300.00185 * 11 10 9 43 43 H 1.09003 * 110.72102 * 35.79710 * 16 14 4 44 44 H 1.09006 * 110.71958 * 159.06386 * 16 14 4 45 45 H 1.09002 * 109.88921 * 97.22643 * 17 16 14 46 46 H 1.08998 * 109.88538 * 218.39134 * 17 16 14 47 47 H 0.96992 * 120.00217 * 179.97438 * 22 21 19 48 48 H 1.08987 * 110.37242 * 265.30614 * 27 18 17 49 49 H 1.09001 * 110.40779 * 142.95287 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5047 1.4424 -0.0279 5 6 4.1564 1.3413 -1.2033 6 8 5.3655 1.4299 -1.2359 7 6 3.3827 1.1181 -2.4771 8 6 4.3538 1.0403 -3.6568 9 7 3.6017 0.8227 -4.8949 10 16 4.3324 1.0648 -6.3611 11 6 5.6304 -0.2003 -6.4343 12 8 3.3125 0.7883 -7.3110 13 8 4.9050 2.3613 -6.2574 14 6 4.2612 1.5525 1.2220 15 1 5.3339 1.5484 1.0286 16 6 3.8698 0.4221 2.2101 17 6 2.5871 0.9693 2.8708 18 7 2.6048 2.4311 2.7142 19 6 1.6321 3.2920 3.1477 20 1 1.7392 4.3542 2.9841 21 6 0.5086 2.7995 3.7973 22 7 0.3783 1.5051 3.9971 23 14 -0.8186 3.9739 4.3879 24 1 -1.8273 4.1614 3.3143 25 1 -1.4777 3.4103 5.5934 26 1 -0.2058 5.2839 4.7256 27 6 3.8445 2.8170 2.0137 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6938 1.9503 0.9001 34 1 1.6599 1.9622 -0.8794 35 1 2.8245 0.1847 -2.4042 36 1 2.6893 1.9450 -2.6307 37 1 4.9123 1.9735 -3.7297 38 1 5.0469 0.2132 -3.5029 39 1 2.6756 0.5367 -4.8560 40 1 5.1781 -1.1895 -6.3635 41 1 6.1695 -0.1136 -7.3776 42 1 6.3239 -0.0578 -5.6055 43 1 3.6627 -0.5041 1.6741 44 1 4.6526 0.2718 2.9537 45 1 1.7091 0.5541 2.3759 46 1 2.5757 0.7099 3.9294 47 1 -0.4066 1.1611 4.4513 48 1 4.6182 3.0867 2.7324 49 1 3.6535 3.6457 1.3319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714855094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:29 Heat of formation + Delta-G solvation = -100.382011 kcal Electronic energy + Delta-G solvation = -30292.295135 eV Core-core repulsion = 26188.706322 eV Total energy + Delta-G solvation = -4103.588814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41821 -39.20819 -38.13777 -37.00685 -36.56464 -36.37383 -34.53759 -33.25895 -31.53088 -30.76638 -30.22336 -29.02517 -27.01614 -26.24416 -24.74694 -22.52090 -21.95790 -21.80145 -20.53417 -19.73508 -18.86752 -18.64797 -18.36944 -17.30287 -17.22842 -16.83402 -16.66951 -16.59570 -15.78030 -15.71463 -15.46569 -15.31267 -14.94193 -14.50837 -14.14389 -13.96197 -13.92716 -13.87254 -13.76436 -13.49025 -13.29490 -13.17776 -13.05864 -12.96813 -12.85215 -12.78491 -12.67547 -12.55933 -12.48105 -12.33737 -12.03771 -11.96428 -11.91309 -11.80873 -11.73326 -11.46348 -11.31479 -10.67827 -10.62482 -10.38376 -9.58713 -8.73392 -7.78406 -5.12315 -0.63168 1.49061 1.50947 1.57714 1.66246 1.72645 2.16066 2.52717 2.92657 3.31662 3.40703 3.56014 3.70940 3.81106 3.95587 4.08617 4.09324 4.11087 4.13555 4.23943 4.31853 4.36470 4.49221 4.56926 4.61839 4.70444 4.74744 4.77525 4.89935 4.93785 4.97765 5.00570 5.03842 5.06561 5.13032 5.17346 5.38822 5.45610 5.49396 5.54432 5.75284 5.79146 5.92028 6.15060 6.26468 6.59674 7.17532 7.21903 7.82108 8.46677 9.30010 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.002577 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.212896 B =10860.723915 C =11302.162719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.087 3.913 4 N -0.586 5.586 5 C 0.514 3.486 6 O -0.582 6.582 7 C -0.144 4.144 8 C 0.131 3.869 9 N -1.114 6.114 10 S 2.626 3.374 11 C -0.653 4.653 12 O -0.997 6.997 13 O -1.005 7.005 14 C 0.134 3.866 15 H 0.106 0.894 16 C -0.143 4.143 17 C 0.178 3.822 18 N -0.613 5.613 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.279 1.279 27 C 0.122 3.878 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.426 0.574 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.051 0.949 46 H -0.002 1.002 47 H 0.246 0.754 48 H 0.031 0.969 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -8.561 -18.106 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.035 4.035 4 N -0.316 5.316 5 C 0.303 3.697 6 O -0.463 6.463 7 C -0.184 4.184 8 C 0.004 3.996 9 N -0.875 5.875 10 S 2.722 3.278 11 C -0.807 4.807 12 O -0.988 6.988 13 O -0.995 6.995 14 C 0.029 3.971 15 H 0.124 0.876 16 C -0.182 4.182 17 C 0.054 3.946 18 N -0.339 5.339 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.243 4.243 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.204 1.204 27 C -0.004 4.004 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.262 0.738 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.283 -7.760 -18.636 21.461 hybrid contribution -0.999 0.204 1.415 1.744 sum 6.284 -7.556 -17.221 19.828 Atomic orbital electron populations 1.21591 0.95188 1.01798 1.01344 1.21951 0.96315 0.96283 1.02236 1.22126 0.77918 0.98311 1.05169 1.47855 1.07473 1.70789 1.05435 1.20992 0.87740 0.75357 0.85620 1.90653 1.15628 1.52752 1.87261 1.21912 0.99411 1.06884 0.90220 1.20996 0.93526 1.02889 0.82203 1.55303 1.24718 1.86586 1.20906 1.04105 0.75743 0.75890 0.72086 1.30333 1.18455 1.18725 1.13203 1.93571 1.57028 1.86970 1.61209 1.93573 1.80805 1.39182 1.85961 1.22026 0.96333 0.95225 0.83498 0.87582 1.23158 0.98909 0.98015 0.98098 1.21163 0.94367 0.82873 0.96184 1.44742 1.19029 1.03118 1.67053 1.19239 0.97265 0.89461 1.30746 0.90850 1.25353 1.00142 0.97296 1.01460 1.70126 1.29144 1.11547 1.47620 0.85307 0.79738 0.78352 0.77244 1.21175 1.22513 1.20420 1.22014 0.88914 0.95720 0.93730 0.91877 0.95200 0.91445 0.90135 0.92677 0.88484 0.90035 0.85368 0.87145 0.91175 0.89284 0.73756 0.82920 0.83701 0.83958 0.90047 0.90545 0.93061 0.98389 0.94485 0.95113 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.13 -3.37 5.30 30.59 0.16 -3.21 16 3 C 0.09 2.60 4.16 86.38 0.36 2.96 16 4 N -0.59 -17.35 2.53 -790.15 -2.00 -19.35 16 5 C 0.51 13.72 7.63 87.66 0.67 14.38 16 6 O -0.58 -18.73 15.37 -3.03 -0.05 -18.78 16 7 C -0.14 -2.49 4.51 29.85 0.13 -2.36 16 8 C 0.13 2.07 5.42 86.38 0.47 2.53 16 9 N -1.11 -13.64 5.89 -187.49 -1.10 -14.74 16 10 S 2.63 38.00 6.10 -56.49 -0.34 37.66 16 11 C -0.65 -3.73 10.89 113.37 1.23 -2.49 16 12 O -1.00 -21.09 18.08 -127.65 -2.31 -23.40 16 13 O -1.01 -24.26 17.50 -127.65 -2.23 -26.49 16 14 C 0.13 4.48 3.66 46.38 0.17 4.65 16 15 H 0.11 3.47 7.02 -2.39 -0.02 3.45 16 16 C -0.14 -4.87 5.99 31.78 0.19 -4.68 16 17 C 0.18 7.89 4.16 86.72 0.36 8.25 16 18 N -0.61 -28.59 1.91 -691.74 -1.32 -29.91 16 19 C -0.24 -12.38 9.90 84.03 0.83 -11.55 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.05 -2.54 5.49 84.86 0.47 -2.07 16 22 N -0.94 -51.36 10.31 21.65 0.22 -51.14 16 23 Si 0.96 43.54 29.55 68.60 2.03 45.57 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.12 4.82 6.54 86.83 0.57 5.39 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.55 6.32 -2.39 -0.02 1.53 16 32 H 0.05 1.68 4.71 -2.39 -0.01 1.67 16 33 H 0.10 3.88 4.32 -2.39 -0.01 3.87 16 34 H 0.08 2.05 6.71 -2.39 -0.02 2.03 16 35 H 0.13 1.57 6.35 -2.39 -0.02 1.56 16 36 H 0.11 1.79 7.29 -2.39 -0.02 1.77 16 37 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 38 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.43 3.77 8.62 -96.76 -0.83 2.93 16 40 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 2.51 6.78 -2.39 -0.02 2.49 16 44 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.05 2.38 4.44 -2.39 -0.01 2.37 16 46 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 47 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 48 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -74.94 387.34 -0.64 -75.58 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.13 Total: 16.20 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.33 Total: 8.79 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.20 Total: -115.13 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -4.59 Total: -68.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 38.00 SS G_CDS: -0.34 Total: 37.66 kcal Total: -74.94 -0.64 -75.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714855094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.803 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds