Wall clock time and date at job start Wed Apr 1 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46817 * 2 1 4 4 N 1.46509 * 109.46736 * 119.99390 * 2 1 3 5 5 C 1.36937 * 119.99880 * 275.00047 * 4 2 1 6 6 H 1.07999 * 120.00433 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99601 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47066 * 60.00333 * 9 7 5 11 11 H 1.48500 * 109.47256 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47715 * 300.00284 * 9 7 5 13 13 C 1.52997 * 109.47210 * 239.99428 * 2 1 3 14 14 H 1.09001 * 109.52311 * 184.92172 * 13 2 1 15 15 C 1.53034 * 109.49716 * 64.83979 * 13 2 1 16 16 C 1.53037 * 109.54029 * 178.68467 * 15 13 2 17 17 C 1.52762 * 109.38492 * 61.23887 * 16 15 13 18 18 N 1.46925 * 109.00542 * 305.59001 * 17 16 15 19 19 C 1.34778 * 120.63048 * 233.58235 * 18 17 16 20 20 O 1.21282 * 119.99881 * 179.72333 * 19 18 17 21 21 C 1.50697 * 119.99990 * 359.72242 * 19 18 17 22 22 N 1.46504 * 109.47025 * 180.02562 * 21 19 18 23 23 C 1.46499 * 119.99574 * 274.99766 * 22 21 19 24 24 S 1.65599 * 120.00054 * 95.00041 * 22 21 19 25 25 C 1.81395 * 104.44748 * 269.99913 * 24 22 21 26 26 O 1.42105 * 104.27655 * 153.92607 * 24 22 21 27 27 O 1.42101 * 104.27764 * 26.07044 * 24 22 21 28 28 C 1.46932 * 118.73922 * 53.31105 * 18 17 16 29 29 H 1.09001 * 109.47325 * 60.00598 * 1 2 3 30 30 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47373 * 300.00331 * 1 2 3 32 32 H 0.97001 * 119.99543 * 95.00288 * 4 2 1 33 33 H 0.97010 * 119.99741 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46039 * 298.70451 * 15 13 2 35 35 H 1.09005 * 109.46105 * 58.67511 * 15 13 2 36 36 H 1.08993 * 109.50221 * 181.31703 * 16 15 13 37 37 H 1.09000 * 109.49464 * 301.41510 * 16 15 13 38 38 H 1.08997 * 109.51273 * 185.70884 * 17 16 15 39 39 H 1.08995 * 109.43413 * 65.42788 * 17 16 15 40 40 H 1.09000 * 109.47438 * 60.00163 * 21 19 18 41 41 H 1.09000 * 109.47157 * 300.00125 * 21 19 18 42 42 H 1.09001 * 109.47025 * 269.99892 * 23 22 21 43 43 H 1.09000 * 109.47507 * 30.00553 * 23 22 21 44 44 H 1.09004 * 109.46776 * 150.00241 * 23 22 21 45 45 H 1.09003 * 109.47393 * 299.99669 * 25 24 22 46 46 H 1.08994 * 109.47678 * 60.00285 * 25 24 22 47 47 H 1.09002 * 109.47051 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.58675 * 66.43056 * 28 18 17 49 49 H 1.09002 * 109.58560 * 186.71141 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0405 2.4244 7 6 2.6121 -0.6614 3.5092 8 7 2.9260 -1.9383 3.4499 9 14 2.7911 0.2707 5.1180 10 1 1.4689 0.8075 5.5288 11 1 3.2999 -0.6476 6.1682 12 1 3.7462 1.3932 4.9362 13 6 2.0400 -0.7214 -1.2491 14 1 3.1264 -0.7988 -1.2070 15 6 1.6320 0.0663 -2.4962 16 6 2.1698 -0.6370 -3.7445 17 6 1.5659 -2.0371 -3.8375 18 7 1.8248 -2.7542 -2.5816 19 6 2.4188 -3.9640 -2.5916 20 8 2.6317 -4.5437 -1.5477 21 6 2.8184 -4.5965 -3.8997 22 7 3.4388 -5.8987 -3.6432 23 6 4.8673 -5.9802 -3.3287 24 16 2.5253 -7.2783 -3.7090 25 6 1.9082 -7.4936 -2.0168 26 8 3.4574 -8.3006 -4.0337 27 8 1.4597 -6.9515 -4.5905 28 6 1.4295 -2.1248 -1.3141 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6317 1.1528 33 1 3.2493 -2.3955 4.2420 34 1 0.5448 0.1222 -2.5509 35 1 2.0450 1.0736 -2.4408 36 1 1.8989 -0.0631 -4.6306 37 1 3.2550 -0.7152 -3.6788 38 1 2.0229 -2.5763 -4.6671 39 1 0.4907 -1.9583 -3.9983 40 1 3.5295 -3.9498 -4.4138 41 1 1.9344 -4.7320 -4.5228 42 1 5.4364 -6.0951 -4.2511 43 1 5.1799 -5.0683 -2.8199 44 1 5.0482 -6.8379 -2.6808 45 1 2.7509 -7.5958 -1.3330 46 1 1.3136 -6.6252 -1.7336 47 1 1.2896 -8.3897 -1.9669 48 1 0.3430 -2.0534 -1.2649 49 1 1.7944 -2.7234 -0.4794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715460506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:02 Heat of formation + Delta-G solvation = -84.805108 kcal Electronic energy + Delta-G solvation = -30416.501404 eV Core-core repulsion = 26313.588056 eV Total energy + Delta-G solvation = -4102.913349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35615 -38.17597 -37.34775 -36.25526 -35.82739 -35.49754 -33.02935 -31.94821 -30.16710 -29.50661 -28.97910 -27.75534 -25.93092 -24.88324 -24.16809 -23.19203 -21.27805 -19.85723 -18.93394 -18.64781 -17.97133 -17.53487 -17.05432 -16.65710 -16.31163 -15.70334 -15.30770 -14.85101 -14.71873 -14.56879 -14.32580 -13.84530 -13.80891 -13.54512 -13.41211 -13.27504 -13.16052 -12.96068 -12.81852 -12.72885 -12.52045 -12.44331 -12.29913 -11.98747 -11.83646 -11.70484 -11.56355 -11.22822 -11.16043 -11.03187 -10.85595 -10.66754 -10.47630 -10.31276 -10.26509 -10.20125 -9.88614 -9.56128 -9.11197 -8.90335 -8.51509 -6.95238 -5.74070 -3.03596 0.08225 2.27173 2.55659 3.00783 3.43976 3.48458 3.49700 3.64106 3.94864 4.32796 4.36487 4.57587 4.67121 4.76861 4.84450 4.89142 4.95763 5.01385 5.05767 5.18502 5.31690 5.36726 5.38788 5.56495 5.58721 5.61325 5.69399 5.73494 5.76684 5.79673 5.82910 5.92127 6.04106 6.09262 6.12305 6.21551 6.33294 6.35900 6.53284 6.60342 6.72434 6.87512 7.10210 7.40833 7.70493 8.14753 8.43749 9.54743 10.12617 10.46726 11.47996 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003054 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.290072 B = 9166.214727 C =10650.312170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.135 4.135 17 C 0.103 3.897 18 N -0.607 5.607 19 C 0.484 3.516 20 O -0.525 6.525 21 C 0.097 3.903 22 N -0.983 5.983 23 C 0.099 3.901 24 S 2.611 3.389 25 C -0.660 4.660 26 O -0.956 6.956 27 O -0.961 6.961 28 C 0.114 3.886 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.122 0.878 48 H 0.072 0.928 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -4.685 -20.176 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.173 4.173 17 C -0.020 4.020 18 N -0.341 5.341 19 C 0.269 3.731 20 O -0.401 6.401 21 C -0.033 4.033 22 N -0.819 5.819 23 C -0.046 4.046 24 S 2.705 3.295 25 C -0.811 4.811 26 O -0.947 6.947 27 O -0.952 6.952 28 C -0.008 4.008 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.504 -5.437 -20.222 20.994 hybrid contribution 0.099 0.604 1.793 1.895 sum -1.405 -4.833 -18.429 19.104 Atomic orbital electron populations 1.22579 0.99546 1.00855 0.99975 1.20173 0.91801 0.95286 0.85772 0.93345 1.42486 1.78153 1.10776 1.05303 1.19172 1.36774 0.93816 0.87415 0.91322 1.24735 1.02159 0.95940 0.97997 1.69665 1.50642 1.08622 1.28916 0.86306 0.77725 0.78604 0.83747 1.21343 1.21743 1.21341 1.21773 1.00941 0.94262 0.95336 0.90822 1.21610 1.01126 0.98994 0.93537 1.21848 1.01115 0.95333 0.98984 1.21718 1.01114 0.93392 0.85766 1.48237 1.59670 1.17975 1.08230 1.21320 0.77987 0.81733 0.92046 1.90753 1.53777 1.62053 1.33528 1.21346 1.01122 0.85560 0.95272 1.57094 1.19116 1.19922 1.85764 1.21470 0.78722 1.03572 1.00856 1.04879 0.74012 0.73037 0.77577 1.30444 1.13736 1.11470 1.25432 1.93604 1.61666 1.56419 1.82996 1.93574 1.56770 1.83118 1.61709 1.21889 0.99444 0.93928 0.85518 0.94294 0.93266 0.92898 0.78114 0.93483 0.91451 0.91598 0.90789 0.91535 0.90061 0.90963 0.86926 0.85958 0.92150 0.90688 0.90864 0.84998 0.84781 0.85948 0.91033 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.77 37.16 0.33 -2.53 16 2 C 0.18 3.37 2.67 -67.93 -0.18 3.18 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.73 -17.76 5.06 -53.42 -0.27 -18.03 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 9 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.10 -1.56 2.27 -90.50 -0.21 -1.77 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.27 4.89 -26.69 -0.13 -1.40 16 16 C -0.13 -1.14 6.06 -26.83 -0.16 -1.30 16 17 C 0.10 0.86 6.31 -3.93 -0.02 0.84 16 18 N -0.61 -7.40 2.98 -173.03 -0.52 -7.92 16 19 C 0.48 6.25 7.76 -10.99 -0.09 6.16 16 20 O -0.53 -8.72 14.43 5.56 0.08 -8.64 16 21 C 0.10 0.90 4.47 -5.19 -0.02 0.88 16 22 N -0.98 -9.97 2.61 -123.05 -0.32 -10.29 16 23 C 0.10 0.90 10.20 59.85 0.61 1.51 16 24 S 2.61 28.17 6.02 -107.50 -0.65 27.52 16 25 C -0.66 -6.51 10.52 101.05 1.06 -5.45 16 26 O -0.96 -12.53 17.09 -57.54 -0.98 -13.51 16 27 O -0.96 -12.28 16.53 -57.54 -0.95 -13.23 16 28 C 0.11 1.73 5.18 -3.71 -0.02 1.72 16 29 H 0.04 0.53 6.59 -51.93 -0.34 0.19 16 30 H 0.05 0.84 6.23 -51.93 -0.32 0.51 16 31 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.38 10.16 6.47 -40.82 -0.26 9.89 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.07 0.71 6.63 -51.93 -0.34 0.37 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.75 7.65 -51.93 -0.40 0.35 16 41 H 0.12 1.00 6.63 -51.93 -0.34 0.66 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 45 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 46 H 0.13 1.50 7.22 -51.93 -0.37 1.12 16 47 H 0.12 0.94 8.14 -51.92 -0.42 0.51 16 48 H 0.07 1.06 6.06 -51.93 -0.31 0.74 16 49 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.07 391.76 -8.99 -45.06 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.91 Total: 8.68 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 0.92 Total: -5.37 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.38 Total: -63.79 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.85 Total: -35.38 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 28.17 SS G_CDS: -0.65 Total: 27.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.07 -8.99 -45.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715460506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.747 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds