Wall clock time and date at job start Wed Apr 1 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46817 * 2 1 4 4 N 1.46509 * 109.46736 * 119.99390 * 2 1 3 5 5 C 1.36937 * 119.99880 * 275.00047 * 4 2 1 6 6 H 1.07999 * 120.00433 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99601 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99854 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47066 * 60.00333 * 9 7 5 11 11 H 1.48500 * 109.47256 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47715 * 300.00284 * 9 7 5 13 13 C 1.52997 * 109.47210 * 239.99428 * 2 1 3 14 14 H 1.09001 * 109.52311 * 184.92172 * 13 2 1 15 15 C 1.53034 * 109.49716 * 64.83979 * 13 2 1 16 16 C 1.53037 * 109.54029 * 178.68467 * 15 13 2 17 17 C 1.52762 * 109.38492 * 61.23887 * 16 15 13 18 18 N 1.46925 * 109.00542 * 305.59001 * 17 16 15 19 19 C 1.34778 * 120.63048 * 233.58235 * 18 17 16 20 20 O 1.21282 * 119.99881 * 179.72333 * 19 18 17 21 21 C 1.50697 * 119.99990 * 359.72242 * 19 18 17 22 22 N 1.46504 * 109.47025 * 180.02562 * 21 19 18 23 23 C 1.46499 * 119.99574 * 274.99766 * 22 21 19 24 24 S 1.65599 * 120.00054 * 95.00041 * 22 21 19 25 25 C 1.81395 * 104.44748 * 269.99913 * 24 22 21 26 26 O 1.42105 * 104.27655 * 153.92607 * 24 22 21 27 27 O 1.42101 * 104.27764 * 26.07044 * 24 22 21 28 28 C 1.46932 * 118.73922 * 53.31105 * 18 17 16 29 29 H 1.09001 * 109.47325 * 60.00598 * 1 2 3 30 30 H 1.08999 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47373 * 300.00331 * 1 2 3 32 32 H 0.97001 * 119.99543 * 95.00288 * 4 2 1 33 33 H 0.97010 * 119.99741 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46039 * 298.70451 * 15 13 2 35 35 H 1.09005 * 109.46105 * 58.67511 * 15 13 2 36 36 H 1.08993 * 109.50221 * 181.31703 * 16 15 13 37 37 H 1.09000 * 109.49464 * 301.41510 * 16 15 13 38 38 H 1.08997 * 109.51273 * 185.70884 * 17 16 15 39 39 H 1.08995 * 109.43413 * 65.42788 * 17 16 15 40 40 H 1.09000 * 109.47438 * 60.00163 * 21 19 18 41 41 H 1.09000 * 109.47157 * 300.00125 * 21 19 18 42 42 H 1.09001 * 109.47025 * 269.99892 * 23 22 21 43 43 H 1.09000 * 109.47507 * 30.00553 * 23 22 21 44 44 H 1.09004 * 109.46776 * 150.00241 * 23 22 21 45 45 H 1.09003 * 109.47393 * 299.99669 * 25 24 22 46 46 H 1.08994 * 109.47678 * 60.00285 * 25 24 22 47 47 H 1.09002 * 109.47051 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.58675 * 66.43056 * 28 18 17 49 49 H 1.09002 * 109.58560 * 186.71141 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0405 2.4244 7 6 2.6121 -0.6614 3.5092 8 7 2.9260 -1.9383 3.4499 9 14 2.7911 0.2707 5.1180 10 1 1.4689 0.8075 5.5288 11 1 3.2999 -0.6476 6.1682 12 1 3.7462 1.3932 4.9362 13 6 2.0400 -0.7214 -1.2491 14 1 3.1264 -0.7988 -1.2070 15 6 1.6320 0.0663 -2.4962 16 6 2.1698 -0.6370 -3.7445 17 6 1.5659 -2.0371 -3.8375 18 7 1.8248 -2.7542 -2.5816 19 6 2.4188 -3.9640 -2.5916 20 8 2.6317 -4.5437 -1.5477 21 6 2.8184 -4.5965 -3.8997 22 7 3.4388 -5.8987 -3.6432 23 6 4.8673 -5.9802 -3.3287 24 16 2.5253 -7.2783 -3.7090 25 6 1.9082 -7.4936 -2.0168 26 8 3.4574 -8.3006 -4.0337 27 8 1.4597 -6.9515 -4.5905 28 6 1.4295 -2.1248 -1.3141 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6317 1.1528 33 1 3.2493 -2.3955 4.2420 34 1 0.5448 0.1222 -2.5509 35 1 2.0450 1.0736 -2.4408 36 1 1.8989 -0.0631 -4.6306 37 1 3.2550 -0.7152 -3.6788 38 1 2.0229 -2.5763 -4.6671 39 1 0.4907 -1.9583 -3.9983 40 1 3.5295 -3.9498 -4.4138 41 1 1.9344 -4.7320 -4.5228 42 1 5.4364 -6.0951 -4.2511 43 1 5.1799 -5.0683 -2.8199 44 1 5.0482 -6.8379 -2.6808 45 1 2.7509 -7.5958 -1.3330 46 1 1.3136 -6.6252 -1.7336 47 1 1.2896 -8.3897 -1.9669 48 1 0.3430 -2.0534 -1.2649 49 1 1.7944 -2.7234 -0.4794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715460506.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:01 Heat of formation + Delta-G solvation = -112.311171 kcal Electronic energy + Delta-G solvation = -30417.694157 eV Core-core repulsion = 26313.588056 eV Total energy + Delta-G solvation = -4104.106101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35873 -39.31311 -38.29047 -37.19370 -36.96577 -36.62837 -34.64789 -33.17346 -31.59571 -30.33530 -30.13813 -29.04743 -26.80874 -26.29493 -25.40982 -24.54508 -22.35225 -20.97687 -20.01108 -19.63733 -19.22392 -18.81239 -18.28220 -17.54908 -17.22016 -16.77050 -16.69833 -16.25215 -15.84607 -15.50861 -15.48627 -15.20162 -15.15414 -14.52456 -14.42374 -14.25739 -14.05645 -13.95956 -13.90603 -13.82760 -13.68864 -13.41271 -13.30633 -13.25728 -12.97462 -12.80724 -12.67591 -12.63404 -12.53731 -12.30943 -12.13010 -12.07412 -11.85021 -11.76625 -11.70336 -11.37409 -11.17658 -11.07856 -10.91586 -9.97240 -9.53515 -8.99934 -7.92669 -5.21311 -0.76718 1.44795 1.45084 1.47895 1.54005 1.59403 2.07705 2.55977 2.78624 3.08472 3.40285 3.50704 3.61274 3.79491 3.92965 3.97273 4.03263 4.06796 4.15736 4.21765 4.30072 4.33525 4.41619 4.45553 4.64059 4.67210 4.71441 4.76416 4.84459 4.87890 4.95496 4.96205 4.97998 4.99505 5.12396 5.14148 5.20438 5.27357 5.36182 5.42305 5.48518 5.54282 5.61312 5.71110 6.28809 6.47640 7.18188 7.34269 8.13511 8.34395 9.30462 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.003054 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.290072 B = 9166.214727 C =10650.312170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.740 5.740 5 C -0.237 4.237 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.972 5.972 9 Si 0.971 3.029 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.090 4.090 14 H 0.045 0.955 15 C -0.110 4.110 16 C -0.128 4.128 17 C 0.094 3.906 18 N -0.606 5.606 19 C 0.475 3.525 20 O -0.573 6.573 21 C 0.100 3.900 22 N -0.986 5.986 23 C 0.093 3.907 24 S 2.631 3.369 25 C -0.659 4.659 26 O -0.980 6.980 27 O -0.979 6.979 28 C 0.123 3.877 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.144 0.856 48 H 0.077 0.923 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -3.190 -23.025 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.062 0.938 4 N -0.381 5.381 5 C -0.369 4.369 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.623 5.623 9 Si 0.800 3.200 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.203 1.203 13 C -0.110 4.110 14 H 0.064 0.936 15 C -0.148 4.148 16 C -0.166 4.166 17 C -0.027 4.027 18 N -0.339 5.339 19 C 0.262 3.738 20 O -0.452 6.452 21 C -0.029 4.029 22 N -0.822 5.822 23 C -0.052 4.052 24 S 2.725 3.275 25 C -0.811 4.811 26 O -0.970 6.970 27 O -0.969 6.969 28 C 0.000 4.000 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.202 0.798 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.162 0.838 48 H 0.095 0.905 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.274 -3.877 -23.151 23.583 hybrid contribution 0.304 0.194 2.638 2.662 sum -1.970 -3.683 -20.513 20.934 Atomic orbital electron populations 1.22401 0.97546 1.00807 1.00931 1.20481 0.93059 0.94854 0.85320 0.93797 1.42751 1.78496 1.10330 1.06503 1.19606 1.34688 0.94161 0.88481 0.90618 1.25547 1.03191 0.96806 1.01491 1.69851 1.52767 1.10364 1.29281 0.85253 0.77973 0.77290 0.79510 1.20386 1.22517 1.20340 1.21578 0.98964 0.94613 0.95858 0.93628 1.21604 1.02099 0.98686 0.92392 1.21843 1.00621 0.95436 0.98717 1.22132 1.02721 0.93320 0.84554 1.48329 1.59106 1.18023 1.08468 1.22107 0.77186 0.81648 0.92881 1.90738 1.55631 1.63319 1.35543 1.21562 1.02719 0.85397 0.93207 1.57057 1.19473 1.20027 1.85631 1.21603 0.78384 1.03385 1.01826 1.04220 0.73314 0.72640 0.77328 1.30423 1.13934 1.11988 1.24742 1.93569 1.62331 1.57537 1.83585 1.93540 1.57347 1.83413 1.62645 1.21512 0.99339 0.93289 0.85909 0.90122 0.93805 0.95043 0.79771 0.94307 0.90049 0.91157 0.87218 0.92178 0.86643 0.89204 0.83405 0.84142 0.90232 0.91086 0.91023 0.85058 0.86056 0.83783 0.90497 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 8.77 71.98 0.63 -4.53 16 2 C 0.17 6.44 2.67 44.99 0.12 6.56 16 3 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 4 N -0.74 -37.67 5.06 -322.94 -1.63 -39.31 16 5 C -0.24 -13.33 9.93 84.03 0.83 -12.50 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 8 N -0.97 -61.61 13.06 21.65 0.28 -61.32 16 9 Si 0.97 47.04 29.55 68.60 2.03 49.06 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C -0.09 -2.71 2.27 -10.72 -0.02 -2.73 16 14 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.11 -2.11 4.89 30.62 0.15 -1.96 16 16 C -0.13 -1.64 6.06 30.53 0.19 -1.46 16 17 C 0.09 1.19 6.31 86.22 0.54 1.73 16 18 N -0.61 -14.03 2.98 -819.74 -2.44 -16.47 16 19 C 0.47 12.01 7.76 87.66 0.68 12.69 16 20 O -0.57 -19.91 14.43 -3.04 -0.04 -19.96 16 21 C 0.10 1.63 4.47 85.63 0.38 2.02 16 22 N -0.99 -18.82 2.61 -543.22 -1.42 -20.24 16 23 C 0.09 1.61 10.20 127.77 1.30 2.91 16 24 S 2.63 54.86 6.02 -56.49 -0.34 54.52 16 25 C -0.66 -13.12 10.52 113.37 1.19 -11.93 16 26 O -0.98 -25.07 17.09 -127.65 -2.18 -27.25 16 27 O -0.98 -23.68 16.53 -127.65 -2.11 -25.79 16 28 C 0.12 3.80 5.18 86.36 0.45 4.25 16 29 H 0.08 1.96 6.59 -2.39 -0.02 1.95 16 30 H 0.04 1.48 6.23 -2.39 -0.01 1.46 16 31 H 0.03 1.14 8.14 -2.38 -0.02 1.13 16 32 H 0.37 20.81 6.47 -92.71 -0.60 20.21 16 33 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 34 H 0.08 1.36 6.63 -2.38 -0.02 1.35 16 35 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.12 0.72 5.93 -2.39 -0.01 0.70 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.15 1.38 7.65 -2.39 -0.02 1.36 16 41 H 0.14 1.84 6.63 -2.39 -0.02 1.82 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 44 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 45 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.12 2.81 7.22 -2.39 -0.02 2.80 16 47 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.25 6.06 -2.39 -0.01 2.24 16 49 H 0.05 2.07 5.82 -2.39 -0.01 2.06 16 Total: -1.00 -82.60 391.76 -0.59 -83.19 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.36 Total: 32.64 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 6.91 Total: -9.08 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -5.21 Total: -137.34 kcal Atomic # 8 Polarization: -68.66 SS G_CDS: -4.34 Total: -72.99 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.34 Total: 54.52 kcal Total: -82.60 -0.59 -83.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715460506.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.123 kcal (2) G-P(sol) polarization free energy of solvation -82.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds