Wall clock time and date at job start Wed Apr 1 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49748 * 2 1 4 4 C 1.53037 * 109.49979 * 120.06328 * 2 1 3 5 5 C 1.53043 * 109.53435 * 58.61832 * 4 2 1 6 6 C 1.53188 * 109.31673 * 61.36763 * 5 4 2 7 7 N 1.46928 * 108.77263 * 305.36391 * 6 5 4 8 8 C 1.34774 * 120.63293 * 233.58373 * 7 6 5 9 9 O 1.21279 * 120.00173 * 174.34609 * 8 7 6 10 10 C 1.50703 * 119.99856 * 354.61982 * 8 7 6 11 11 C 1.53000 * 109.47247 * 179.72378 * 10 8 7 12 12 N 1.46500 * 109.46800 * 179.97438 * 11 10 8 13 13 S 1.65607 * 119.99800 * 165.00018 * 12 11 10 14 14 C 1.81402 * 104.44581 * 64.99969 * 13 12 11 15 15 O 1.42096 * 104.27933 * 181.06996 * 13 12 11 16 16 O 1.42102 * 104.27700 * 308.93123 * 13 12 11 17 17 C 1.46924 * 118.73988 * 53.85965 * 7 6 5 18 18 H 1.09003 * 109.58620 * 65.92690 * 17 7 6 19 19 C 1.52998 * 109.59001 * 186.35204 * 17 7 6 20 20 N 1.46502 * 109.46972 * 292.90072 * 19 17 7 21 21 C 1.36941 * 119.99993 * 185.82417 * 20 19 17 22 22 H 1.07996 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99880 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00016 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.46934 * 120.00066 * 25 23 21 28 28 H 1.48498 * 109.46863 * 239.99778 * 25 23 21 29 29 H 1.08996 * 109.47064 * 299.93967 * 1 2 3 30 30 H 1.09004 * 109.47004 * 59.93129 * 1 2 3 31 31 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.45704 * 298.60138 * 4 2 1 33 33 H 1.09001 * 109.46332 * 178.63916 * 4 2 1 34 34 H 1.09004 * 109.49757 * 301.41048 * 5 4 2 35 35 H 1.09004 * 109.49658 * 181.32059 * 5 4 2 36 36 H 1.09002 * 109.58696 * 185.57753 * 6 5 4 37 37 H 1.08997 * 109.58507 * 65.14934 * 6 5 4 38 38 H 1.09002 * 109.47261 * 299.72497 * 10 8 7 39 39 H 1.09006 * 109.47339 * 59.72167 * 10 8 7 40 40 H 1.08993 * 109.46915 * 299.99655 * 11 10 8 41 41 H 1.08999 * 109.46907 * 60.00308 * 11 10 8 42 42 H 0.97001 * 120.00553 * 344.99952 * 12 11 10 43 43 H 1.08999 * 109.47362 * 60.00161 * 14 13 12 44 44 H 1.09007 * 109.46706 * 180.02562 * 14 13 12 45 45 H 1.08997 * 109.47317 * 299.99742 * 14 13 12 46 46 H 1.09001 * 109.47280 * 52.89856 * 19 17 7 47 47 H 1.09002 * 109.47312 * 172.89884 * 19 17 7 48 48 H 0.97003 * 120.00193 * 5.82013 * 20 19 17 49 49 H 0.97007 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5036 -2.1556 1.2661 6 6 2.0153 -2.9038 0.0312 7 7 1.6528 -2.1382 -1.1693 8 6 0.9765 -2.7225 -2.1782 9 8 0.5936 -2.0570 -3.1170 10 6 0.6908 -4.2016 -2.1367 11 6 -0.0897 -4.6056 -3.3890 12 7 -0.3669 -6.0436 -3.3489 13 16 -1.4996 -6.6972 -4.3649 14 6 -0.8132 -6.4514 -6.0259 15 8 -1.5146 -8.0783 -4.0310 16 8 -2.6503 -5.8851 -4.1756 17 6 2.0468 -0.7252 -1.2518 18 1 3.1333 -0.6510 -1.2981 19 6 1.4330 -0.0937 -2.5029 20 7 2.0381 -0.6885 -3.6972 21 6 1.7319 -0.1958 -4.9377 22 1 1.0440 0.6310 -5.0356 23 6 2.3057 -0.7590 -6.0692 24 7 3.1444 -1.7663 -5.9498 25 14 1.8875 -0.0873 -7.7614 26 1 0.9269 1.0369 -7.6242 27 1 3.1262 0.3971 -8.4217 28 1 1.2763 -1.1624 -8.5835 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6982 -0.1954 2.1389 33 1 3.1306 -0.7435 1.2358 34 1 0.4138 -2.1358 1.2540 35 1 1.8487 -2.6624 2.1674 36 1 1.5571 -3.8918 -0.0133 37 1 3.0992 -3.0036 0.0875 38 1 1.6308 -4.7524 -2.1009 39 1 0.1003 -4.4329 -1.2501 40 1 -1.0296 -4.0550 -3.4247 41 1 0.5009 -4.3744 -4.2755 42 1 0.1131 -6.6130 -2.7272 43 1 0.1458 -6.9637 -6.1023 44 1 -1.5021 -6.8565 -6.7673 45 1 -0.6713 -5.3858 -6.2064 46 1 0.3582 -0.2751 -2.5115 47 1 1.6202 0.9801 -2.4971 48 1 2.6557 -1.4313 -3.6093 49 1 3.5451 -2.1601 -6.7406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715482175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:19 Heat of formation + Delta-G solvation = -56.327230 kcal Electronic energy + Delta-G solvation = -30949.731396 eV Core-core repulsion = 26848.052941 eV Total energy + Delta-G solvation = -4101.678455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38228 -37.55142 -37.09461 -35.98943 -35.60666 -34.42387 -33.24460 -32.08833 -30.29990 -29.79360 -29.43920 -27.02600 -26.00658 -24.34700 -23.33769 -22.65103 -21.03521 -19.90748 -19.37957 -18.23308 -17.62847 -17.04721 -16.48555 -16.29316 -15.93475 -15.63368 -15.29221 -14.92747 -14.77528 -14.50020 -14.23652 -13.72077 -13.63821 -13.31684 -13.25238 -13.15146 -13.03947 -12.76889 -12.51097 -12.30235 -12.15695 -12.12117 -12.03117 -11.97224 -11.63580 -11.53147 -11.38268 -11.22675 -11.01380 -10.96562 -10.90152 -10.74727 -10.61939 -10.31343 -10.17921 -9.83226 -9.53617 -9.40977 -8.73541 -8.29789 -8.03220 -6.50080 -5.59449 -2.77952 0.26981 2.67299 3.35788 3.44268 3.51713 3.56857 3.58489 3.76613 4.21334 4.69921 4.71056 4.73559 4.80556 4.91452 4.91561 4.98795 5.09995 5.14318 5.26875 5.32535 5.41967 5.53150 5.58194 5.65795 5.71879 5.75615 5.75698 5.81903 5.83920 5.92343 5.94681 6.02658 6.07413 6.14712 6.21315 6.26620 6.32464 6.51168 6.55184 6.68619 6.95530 6.96387 7.30192 7.85187 7.98858 8.59011 8.96409 9.70775 10.30940 10.65378 11.64448 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007188 B = 0.004922 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3894.683828 B = 5687.410647 C = 8828.441756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.137 4.137 6 C 0.112 3.888 7 N -0.615 5.615 8 C 0.470 3.530 9 O -0.439 6.439 10 C -0.139 4.139 11 C 0.127 3.873 12 N -1.121 6.121 13 S 2.619 3.381 14 C -0.672 4.672 15 O -0.969 6.969 16 O -0.958 6.958 17 C 0.148 3.852 18 H 0.066 0.934 19 C 0.161 3.839 20 N -0.694 5.694 21 C -0.202 4.202 22 H 0.065 0.935 23 C -0.023 4.023 24 N -0.939 5.939 25 Si 0.898 3.102 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.414 0.586 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.135 0.865 46 H 0.045 0.955 47 H 0.013 0.987 48 H 0.379 0.621 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 -7.296 13.799 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.012 4.012 7 N -0.353 5.353 8 C 0.254 3.746 9 O -0.306 6.306 10 C -0.180 4.180 11 C 0.001 3.999 12 N -0.880 5.880 13 S 2.711 3.289 14 C -0.823 4.823 15 O -0.959 6.959 16 O -0.948 6.948 17 C 0.044 3.956 18 H 0.084 0.916 19 C 0.033 3.967 20 N -0.337 5.337 21 C -0.334 4.334 22 H 0.083 0.917 23 C -0.217 4.217 24 N -0.591 5.591 25 Si 0.731 3.269 26 H -0.208 1.208 27 H -0.224 1.224 28 H -0.224 1.224 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.248 0.752 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.063 0.937 47 H 0.031 0.969 48 H 0.213 0.787 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.598 -7.075 13.201 15.667 hybrid contribution 0.999 -0.047 -1.070 1.464 sum -3.599 -7.122 12.131 14.520 Atomic orbital electron populations 1.21836 0.94866 1.02017 1.01309 1.21534 0.96668 0.99286 0.94500 0.90525 1.21522 1.00368 0.95491 0.97612 1.21963 1.01630 0.96337 0.97558 1.21575 0.99828 0.94948 0.84811 1.47778 1.58613 1.10846 1.18077 1.20170 0.82493 0.89125 0.82791 1.91170 1.45260 1.62554 1.31639 1.21736 1.01645 0.95636 0.99031 1.21121 1.01499 0.78046 0.99211 1.55529 1.61502 1.16720 1.54274 1.04502 0.74186 0.73427 0.76815 1.30507 1.14000 1.12954 1.24811 1.93592 1.86679 1.33090 1.82572 1.93617 1.46849 1.69868 1.84453 1.21555 0.98408 0.80006 0.95599 0.91612 1.20937 0.97536 0.93486 0.84696 1.42303 1.51771 1.38969 1.00640 1.19207 1.19436 1.10679 0.84078 0.91711 1.24566 1.00882 0.99121 0.97135 1.69667 1.34920 1.27047 1.27459 0.86205 0.77203 0.77890 0.85556 1.20843 1.22401 1.22371 0.93560 0.91995 0.92434 0.92127 0.92008 0.91213 0.91441 0.90280 0.92083 0.89277 0.89444 0.89485 0.89863 0.75206 0.85223 0.85611 0.84668 0.93729 0.96944 0.78700 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.22 37.16 0.31 -1.47 16 2 C -0.10 -1.23 2.81 -90.28 -0.25 -1.48 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.09 5.43 -26.69 -0.14 -1.24 16 5 C -0.14 -1.22 5.74 -26.61 -0.15 -1.37 16 6 C 0.11 1.15 6.32 -3.71 -0.02 1.13 16 7 N -0.61 -8.80 2.40 -164.97 -0.40 -9.20 16 8 C 0.47 7.84 6.96 -10.99 -0.08 7.76 16 9 O -0.44 -9.46 9.65 5.56 0.05 -9.41 16 10 C -0.14 -1.74 4.25 -27.88 -0.12 -1.86 16 11 C 0.13 1.75 5.42 -4.04 -0.02 1.73 16 12 N -1.12 -12.12 5.89 -10.62 -0.06 -12.18 16 13 S 2.62 30.41 6.10 -107.50 -0.66 29.75 16 14 C -0.67 -6.64 10.89 101.05 1.10 -5.54 16 15 O -0.97 -13.41 18.08 -57.54 -1.04 -14.45 16 16 O -0.96 -14.87 17.50 -57.54 -1.01 -15.87 16 17 C 0.15 2.32 2.68 -67.37 -0.18 2.14 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.16 3.28 4.16 -4.04 -0.02 3.26 16 20 N -0.69 -17.50 3.15 -59.91 -0.19 -17.69 16 21 C -0.20 -5.73 9.69 -15.06 -0.15 -5.87 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 24 N -0.94 -28.23 13.06 55.49 0.72 -27.50 16 25 Si 0.90 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.88 6.54 -51.93 -0.34 0.54 16 31 H 0.06 0.74 5.97 -51.93 -0.31 0.43 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.67 5.96 -51.93 -0.31 0.36 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 39 H 0.09 0.89 7.45 -51.93 -0.39 0.50 16 40 H 0.09 1.33 7.65 -51.93 -0.40 0.93 16 41 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.41 3.53 8.62 -34.47 -0.30 3.23 16 43 H 0.13 1.11 8.14 -51.92 -0.42 0.68 16 44 H 0.13 1.02 8.14 -51.92 -0.42 0.59 16 45 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 46 H 0.05 0.98 5.12 -51.93 -0.27 0.71 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.38 10.12 6.82 -40.82 -0.28 9.84 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -37.29 387.17 -9.54 -46.83 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.95 Total: 9.50 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 0.17 Total: -3.57 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: 0.08 Total: -66.57 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.99 Total: -39.73 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: 30.41 SS G_CDS: -0.66 Total: 29.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.29 -9.54 -46.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.496 kcal (2) G-P(sol) polarization free energy of solvation -37.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds