Wall clock time and date at job start Wed Apr 1 2020 05:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49748 * 2 1 4 4 C 1.53037 * 109.49979 * 120.06328 * 2 1 3 5 5 C 1.53043 * 109.53435 * 58.61832 * 4 2 1 6 6 C 1.53188 * 109.31673 * 61.36763 * 5 4 2 7 7 N 1.46928 * 108.77263 * 305.36391 * 6 5 4 8 8 C 1.34774 * 120.63293 * 233.58373 * 7 6 5 9 9 O 1.21279 * 120.00173 * 174.34609 * 8 7 6 10 10 C 1.50703 * 119.99856 * 354.61982 * 8 7 6 11 11 C 1.53000 * 109.47247 * 179.72378 * 10 8 7 12 12 N 1.46500 * 109.46800 * 179.97438 * 11 10 8 13 13 S 1.65607 * 119.99800 * 165.00018 * 12 11 10 14 14 C 1.81402 * 104.44581 * 64.99969 * 13 12 11 15 15 O 1.42096 * 104.27933 * 181.06996 * 13 12 11 16 16 O 1.42102 * 104.27700 * 308.93123 * 13 12 11 17 17 C 1.46924 * 118.73988 * 53.85965 * 7 6 5 18 18 H 1.09003 * 109.58620 * 65.92690 * 17 7 6 19 19 C 1.52998 * 109.59001 * 186.35204 * 17 7 6 20 20 N 1.46502 * 109.46972 * 292.90072 * 19 17 7 21 21 C 1.36941 * 119.99993 * 185.82417 * 20 19 17 22 22 H 1.07996 * 119.99774 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99880 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00016 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99872 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.46934 * 120.00066 * 25 23 21 28 28 H 1.48498 * 109.46863 * 239.99778 * 25 23 21 29 29 H 1.08996 * 109.47064 * 299.93967 * 1 2 3 30 30 H 1.09004 * 109.47004 * 59.93129 * 1 2 3 31 31 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.45704 * 298.60138 * 4 2 1 33 33 H 1.09001 * 109.46332 * 178.63916 * 4 2 1 34 34 H 1.09004 * 109.49757 * 301.41048 * 5 4 2 35 35 H 1.09004 * 109.49658 * 181.32059 * 5 4 2 36 36 H 1.09002 * 109.58696 * 185.57753 * 6 5 4 37 37 H 1.08997 * 109.58507 * 65.14934 * 6 5 4 38 38 H 1.09002 * 109.47261 * 299.72497 * 10 8 7 39 39 H 1.09006 * 109.47339 * 59.72167 * 10 8 7 40 40 H 1.08993 * 109.46915 * 299.99655 * 11 10 8 41 41 H 1.08999 * 109.46907 * 60.00308 * 11 10 8 42 42 H 0.97001 * 120.00553 * 344.99952 * 12 11 10 43 43 H 1.08999 * 109.47362 * 60.00161 * 14 13 12 44 44 H 1.09007 * 109.46706 * 180.02562 * 14 13 12 45 45 H 1.08997 * 109.47317 * 299.99742 * 14 13 12 46 46 H 1.09001 * 109.47280 * 52.89856 * 19 17 7 47 47 H 1.09002 * 109.47312 * 172.89884 * 19 17 7 48 48 H 0.97003 * 120.00193 * 5.82013 * 20 19 17 49 49 H 0.97007 * 119.99756 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5036 -2.1556 1.2661 6 6 2.0153 -2.9038 0.0312 7 7 1.6528 -2.1382 -1.1693 8 6 0.9765 -2.7225 -2.1782 9 8 0.5936 -2.0570 -3.1170 10 6 0.6908 -4.2016 -2.1367 11 6 -0.0897 -4.6056 -3.3890 12 7 -0.3669 -6.0436 -3.3489 13 16 -1.4996 -6.6972 -4.3649 14 6 -0.8132 -6.4514 -6.0259 15 8 -1.5146 -8.0783 -4.0310 16 8 -2.6503 -5.8851 -4.1756 17 6 2.0468 -0.7252 -1.2518 18 1 3.1333 -0.6510 -1.2981 19 6 1.4330 -0.0937 -2.5029 20 7 2.0381 -0.6885 -3.6972 21 6 1.7319 -0.1958 -4.9377 22 1 1.0440 0.6310 -5.0356 23 6 2.3057 -0.7590 -6.0692 24 7 3.1444 -1.7663 -5.9498 25 14 1.8875 -0.0873 -7.7614 26 1 0.9269 1.0369 -7.6242 27 1 3.1262 0.3971 -8.4217 28 1 1.2763 -1.1624 -8.5835 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6982 -0.1954 2.1389 33 1 3.1306 -0.7435 1.2358 34 1 0.4138 -2.1358 1.2540 35 1 1.8487 -2.6624 2.1674 36 1 1.5571 -3.8918 -0.0133 37 1 3.0992 -3.0036 0.0875 38 1 1.6308 -4.7524 -2.1009 39 1 0.1003 -4.4329 -1.2501 40 1 -1.0296 -4.0550 -3.4247 41 1 0.5009 -4.3744 -4.2755 42 1 0.1131 -6.6130 -2.7272 43 1 0.1458 -6.9637 -6.1023 44 1 -1.5021 -6.8565 -6.7673 45 1 -0.6713 -5.3858 -6.2064 46 1 0.3582 -0.2751 -2.5115 47 1 1.6202 0.9801 -2.4971 48 1 2.6557 -1.4313 -3.6093 49 1 3.5451 -2.1601 -6.7406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715482175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:15 Heat of formation + Delta-G solvation = -85.309238 kcal Electronic energy + Delta-G solvation = -30950.988150 eV Core-core repulsion = 26848.052941 eV Total energy + Delta-G solvation = -4102.935209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -41.59870 -38.68684 -38.17871 -37.08187 -36.82665 -36.03069 -34.47344 -33.60749 -31.75843 -31.03966 -30.29851 -28.33929 -27.16556 -25.85320 -24.52892 -24.10511 -22.34945 -20.97465 -20.38224 -19.55611 -18.93443 -18.46971 -17.72937 -17.30627 -17.04322 -16.83420 -16.70320 -16.32392 -15.76212 -15.75198 -15.51895 -15.10175 -14.90879 -14.72015 -14.47436 -14.12865 -14.03410 -13.94210 -13.85196 -13.61080 -13.24942 -13.23542 -13.21868 -13.09624 -12.90724 -12.82783 -12.71688 -12.53357 -12.45958 -12.26741 -12.02982 -11.99743 -11.96414 -11.79593 -11.55892 -11.19871 -11.13600 -10.80644 -10.43179 -9.71843 -9.32027 -8.50512 -7.79888 -4.96273 -0.68777 1.45346 1.46007 1.55393 1.69117 2.11364 2.32304 2.63968 2.81935 3.25557 3.53135 3.69416 3.78585 3.85497 3.98153 4.00516 4.07549 4.14827 4.20896 4.23554 4.34726 4.46198 4.49514 4.53648 4.60411 4.66952 4.74024 4.87755 4.89866 4.91536 4.98082 4.98182 5.02087 5.08022 5.15606 5.18459 5.30864 5.35125 5.36995 5.46484 5.57572 5.63701 5.95831 6.15581 6.41838 6.80304 7.48701 7.70745 8.28706 8.52710 9.44376 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007188 B = 0.004922 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3894.683828 B = 5687.410647 C = 8828.441756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.103 3.897 7 N -0.611 5.611 8 C 0.466 3.534 9 O -0.502 6.502 10 C -0.131 4.131 11 C 0.135 3.865 12 N -1.108 6.108 13 S 2.637 3.363 14 C -0.665 4.665 15 O -0.987 6.987 16 O -1.000 7.000 17 C 0.153 3.847 18 H 0.056 0.944 19 C 0.166 3.834 20 N -0.699 5.699 21 C -0.204 4.204 22 H 0.056 0.944 23 C -0.078 4.078 24 N -0.967 5.967 25 Si 0.956 3.044 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.297 1.297 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.427 0.573 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.124 0.876 46 H 0.030 0.970 47 H 0.002 0.998 48 H 0.370 0.630 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -8.454 16.066 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.145 4.145 5 C -0.169 4.169 6 C -0.019 4.019 7 N -0.348 5.348 8 C 0.252 3.748 9 O -0.374 6.374 10 C -0.172 4.172 11 C 0.008 3.992 12 N -0.869 5.869 13 S 2.732 3.268 14 C -0.817 4.817 15 O -0.978 6.978 16 O -0.990 6.990 17 C 0.049 3.951 18 H 0.074 0.926 19 C 0.039 3.961 20 N -0.340 5.340 21 C -0.337 4.337 22 H 0.074 0.926 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.788 3.212 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.264 0.736 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.143 0.857 46 H 0.048 0.952 47 H 0.020 0.980 48 H 0.202 0.798 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.191 -8.240 15.574 18.111 hybrid contribution 0.848 0.307 -1.701 1.925 sum -3.343 -7.933 13.873 16.327 Atomic orbital electron populations 1.21773 0.94945 1.01644 1.01077 1.21505 0.96451 0.99369 0.94085 0.90371 1.21513 1.00661 0.95935 0.96424 1.21951 1.01395 0.95714 0.97847 1.21951 1.00787 0.95726 0.83412 1.47914 1.57431 1.10467 1.18987 1.20959 0.80918 0.90671 0.82230 1.91150 1.48321 1.64096 1.33856 1.21734 1.03152 0.92753 0.99606 1.20832 1.00198 0.79156 0.99056 1.55221 1.61243 1.15571 1.54899 1.03787 0.73478 0.72296 0.77258 1.30424 1.15366 1.12663 1.23294 1.93563 1.86966 1.33948 1.83325 1.93565 1.49321 1.70674 1.85446 1.21369 0.97453 0.81371 0.94953 0.92583 1.20921 0.96784 0.92928 0.85447 1.42327 1.51854 1.38760 1.01052 1.19445 1.18418 1.10041 0.85792 0.92580 1.25189 1.01676 1.00010 1.00084 1.69794 1.36169 1.28314 1.27777 0.85291 0.76861 0.77312 0.81754 1.20211 1.22350 1.22436 0.91214 0.94756 0.92853 0.90168 0.91520 0.91513 0.88421 0.87872 0.91163 0.86825 0.86114 0.91584 0.92430 0.73597 0.83380 0.83456 0.85719 0.95196 0.98020 0.79815 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.22 71.98 0.59 -2.68 16 2 C -0.09 -2.18 2.81 -10.57 -0.03 -2.21 16 3 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 4 C -0.11 -1.72 5.43 30.62 0.17 -1.56 16 5 C -0.13 -1.80 5.74 30.67 0.18 -1.62 16 6 C 0.10 1.76 6.32 86.36 0.55 2.31 16 7 N -0.61 -16.80 2.40 -794.22 -1.91 -18.71 16 8 C 0.47 15.51 6.96 87.66 0.61 16.12 16 9 O -0.50 -22.59 9.65 -3.03 -0.03 -22.62 16 10 C -0.13 -3.09 4.25 29.85 0.13 -2.96 16 11 C 0.13 3.72 5.42 86.38 0.47 4.19 16 12 N -1.11 -22.89 5.89 -187.50 -1.10 -23.99 16 13 S 2.64 60.06 6.10 -56.49 -0.34 59.72 16 14 C -0.67 -12.49 10.89 113.37 1.23 -11.26 16 15 O -0.99 -26.27 18.08 -127.65 -2.31 -28.58 16 16 O -1.00 -31.52 17.50 -127.65 -2.23 -33.75 16 17 C 0.15 4.79 2.68 45.12 0.12 4.91 16 18 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 19 C 0.17 7.05 4.16 86.38 0.36 7.41 16 20 N -0.70 -36.72 3.15 -343.45 -1.08 -37.81 16 21 C -0.20 -12.00 9.69 84.03 0.81 -11.18 16 22 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 24 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 25 Si 0.96 48.42 29.55 68.60 2.03 50.45 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 28 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 0.99 6.54 -2.39 -0.02 0.97 16 31 H 0.05 1.31 5.97 -2.39 -0.01 1.29 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.00 6.34 -2.39 -0.02 0.99 16 35 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.10 1.28 5.96 -2.39 -0.01 1.27 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 2.17 8.12 -2.39 -0.02 2.15 16 39 H 0.12 2.05 7.45 -2.38 -0.02 2.03 16 40 H 0.07 2.11 7.65 -2.39 -0.02 2.09 16 41 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 42 H 0.43 6.39 8.62 -96.74 -0.83 5.55 16 43 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.15 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.03 1.39 5.12 -2.39 -0.01 1.38 16 47 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.37 20.48 6.82 -92.71 -0.63 19.85 16 49 H 0.24 14.60 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -84.37 387.17 -1.55 -85.92 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.50 Total: 31.43 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.65 Total: -2.73 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -3.81 Total: -139.83 kcal Atomic # 8 Polarization: -80.39 SS G_CDS: -4.57 Total: -84.96 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Atomic # 16 Polarization: 60.06 SS G_CDS: -0.34 Total: 59.72 kcal Total: -84.37 -1.55 -85.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715482175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.609 kcal (2) G-P(sol) polarization free energy of solvation -84.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds