Wall clock time and date at job start Wed Apr 1 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 N 1.46502 * 109.46987 * 239.99586 * 2 1 3 5 5 C 1.36941 * 119.99779 * 85.00504 * 4 2 1 6 6 H 1.08006 * 120.00013 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99784 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47328 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47111 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47092 * 330.00045 * 9 7 5 13 13 C 1.53005 * 109.47137 * 119.99911 * 2 1 3 14 14 H 1.08992 * 110.91574 * 57.06826 * 13 2 1 15 15 C 1.55160 * 111.00109 * 293.17005 * 13 2 1 16 16 C 1.54321 * 102.94157 * 206.42501 * 15 13 2 17 17 N 1.47188 * 107.29437 * 22.28370 * 16 15 13 18 18 C 1.34777 * 125.73634 * 181.03089 * 17 16 15 19 19 O 1.21280 * 119.99923 * 179.86277 * 18 17 16 20 20 C 1.50703 * 119.99894 * 359.85989 * 18 17 16 21 21 C 1.53004 * 109.46958 * 180.02562 * 20 18 17 22 22 S 1.81397 * 109.47005 * 180.02562 * 21 20 18 23 23 O 1.42094 * 110.54412 * 291.62341 * 22 21 20 24 24 O 1.42108 * 110.54289 * 68.37253 * 22 21 20 25 25 N 1.65607 * 104.44755 * 179.97438 * 22 21 20 26 26 C 1.46497 * 119.99641 * 90.00123 * 25 22 21 27 27 C 1.46499 * 119.99805 * 269.99908 * 25 22 21 28 28 C 1.47417 * 108.61382 * 0.91119 * 17 16 15 29 29 H 1.08997 * 109.46957 * 65.26742 * 1 2 3 30 30 H 1.08995 * 109.46867 * 185.26509 * 1 2 3 31 31 H 1.09002 * 109.46892 * 305.26975 * 1 2 3 32 32 H 0.96997 * 119.99842 * 264.99432 * 4 2 1 33 33 H 0.97003 * 119.99763 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.72138 * 324.78735 * 15 13 2 35 35 H 1.09000 * 110.72097 * 88.05797 * 15 13 2 36 36 H 1.08995 * 109.88499 * 141.61016 * 16 15 13 37 37 H 1.08999 * 109.88527 * 262.62180 * 16 15 13 38 38 H 1.08999 * 109.47089 * 300.00454 * 20 18 17 39 39 H 1.09000 * 109.47167 * 60.00707 * 20 18 17 40 40 H 1.09010 * 109.46711 * 300.00126 * 21 20 18 41 41 H 1.08999 * 109.47344 * 59.99613 * 21 20 18 42 42 H 1.09007 * 109.47023 * 90.00008 * 26 25 22 43 43 H 1.09004 * 109.46631 * 209.99920 * 26 25 22 44 44 H 1.08993 * 109.47120 * 329.99658 * 26 25 22 45 45 H 1.08997 * 109.47334 * 0.02562 * 27 25 22 46 46 H 1.09001 * 109.47016 * 120.00497 * 27 25 22 47 47 H 1.09003 * 109.47021 * 239.99859 * 27 25 22 48 48 H 1.09002 * 110.37157 * 217.11188 * 28 17 16 49 49 H 1.09007 * 110.36945 * 94.90267 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4495 9 14 2.7902 0.2698 -5.1183 10 1 4.1520 0.8558 -5.2032 11 1 2.5804 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6479 -1.7370 1.2995 15 6 1.6881 0.0749 2.5337 16 6 2.7880 -0.3625 3.5238 17 7 3.9238 -0.8537 2.7269 18 6 5.0775 -1.3456 3.2205 19 8 5.9472 -1.7252 2.4653 20 6 5.2867 -1.4239 4.7109 21 6 6.6679 -2.0145 5.0017 22 16 6.9194 -2.1094 6.7956 23 8 7.0309 -0.8071 7.3531 24 8 6.0552 -3.0805 7.3697 25 7 8.4333 -2.7586 6.9668 26 6 9.6036 -1.8800 7.0340 27 6 8.6020 -4.2114 7.0511 28 6 3.5884 -0.7207 1.2976 29 1 -0.3633 0.4299 -0.9334 30 1 -0.3633 -1.0233 0.0943 31 1 -0.3633 0.5934 0.8391 32 1 2.2491 -1.6318 -1.1525 33 1 3.2495 -2.3960 -4.2416 34 1 1.7401 1.1478 2.3488 35 1 0.7021 -0.2062 2.9037 36 1 3.1019 0.4881 4.1287 37 1 2.4119 -1.1569 4.1684 38 1 5.2218 -0.4240 5.1399 39 1 4.5191 -2.0593 5.1527 40 1 6.7331 -3.0144 4.5725 41 1 7.4352 -1.3788 4.5599 42 1 9.7990 -1.6139 8.0729 43 1 10.4703 -2.3973 6.6222 44 1 9.4124 -0.9754 6.4569 45 1 7.6275 -4.6949 6.9830 46 1 9.2343 -4.5519 6.2311 47 1 9.0699 -4.4683 8.0015 48 1 3.9857 -1.5651 0.7344 49 1 3.9799 0.2164 0.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716975391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:36 Heat of formation + Delta-G solvation = -91.021016 kcal Electronic energy + Delta-G solvation = -28889.852407 eV Core-core repulsion = 24786.669516 eV Total energy + Delta-G solvation = -4103.182891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.10406 -37.94052 -37.54323 -36.65743 -36.23247 -35.22623 -33.49451 -32.45524 -30.57275 -28.75286 -28.54299 -28.25310 -25.78503 -24.93559 -23.90892 -22.88223 -21.52379 -19.68677 -19.29653 -19.25587 -18.15325 -17.44559 -17.05589 -16.88397 -16.41045 -16.15061 -15.71859 -15.17532 -14.85752 -14.76806 -14.48745 -14.01263 -13.69810 -13.63301 -13.46554 -13.15307 -12.99257 -12.96304 -12.84788 -12.67660 -12.59773 -12.45581 -12.21006 -12.06610 -12.04877 -11.95210 -11.83797 -11.69727 -11.35816 -11.21598 -10.90253 -10.79125 -10.61599 -10.56264 -10.23757 -9.97281 -9.84024 -9.63619 -9.51685 -8.92404 -8.58042 -6.97449 -5.76628 -3.05826 -0.18911 2.17565 2.57503 2.94097 3.43402 3.43824 3.48385 3.50103 3.76026 4.00126 4.23672 4.38572 4.39644 4.57545 4.64318 4.84566 4.87457 4.91548 4.95481 4.99751 5.11541 5.13432 5.29321 5.33542 5.36399 5.41030 5.45751 5.50765 5.54085 5.63205 5.86365 5.86567 5.90148 6.00756 6.03279 6.13943 6.27453 6.33171 6.36669 6.53696 6.61038 6.82962 7.05642 7.53690 7.69447 8.12985 8.41381 9.52767 10.09364 10.43743 11.45864 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002106 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.547674 B =13289.070435 C =14290.290425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.095 3.905 17 N -0.618 5.618 18 C 0.532 3.468 19 O -0.534 6.534 20 C -0.130 4.130 21 C -0.612 4.612 22 S 2.610 3.390 23 O -0.951 6.951 24 O -0.952 6.952 25 N -1.007 6.007 26 C 0.093 3.907 27 C 0.084 3.916 28 C 0.119 3.881 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -0.538 24.644 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.163 4.163 16 C -0.028 4.028 17 N -0.352 5.352 18 C 0.319 3.681 19 O -0.410 6.410 20 C -0.172 4.172 21 C -0.741 4.741 22 S 2.702 3.298 23 O -0.941 6.941 24 O -0.942 6.942 25 N -0.846 5.846 26 C -0.053 4.053 27 C -0.061 4.061 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.657 -0.419 24.833 25.991 hybrid contribution 0.414 0.006 -1.675 1.725 sum 8.071 -0.413 23.159 24.528 Atomic orbital electron populations 1.22440 0.99042 1.00537 1.00399 1.20161 0.91944 0.95142 0.85333 0.93300 1.42423 1.78171 1.10721 1.05285 1.19195 1.36656 0.93817 0.87290 0.91219 1.24735 1.02134 0.95951 0.98052 1.69658 1.50734 1.08653 1.28905 0.86222 0.77772 0.78587 0.83780 1.21753 1.21833 1.20815 1.22690 0.94046 1.00282 0.95215 0.90070 1.22677 0.97657 1.01103 0.94822 1.22175 0.87078 0.98815 0.94779 1.48642 1.15398 1.62077 1.09111 1.19735 0.81051 0.77605 0.89717 1.90741 1.42035 1.48241 1.60017 1.21336 0.95557 1.03855 0.96429 1.30482 1.05080 1.11867 1.26694 1.05155 0.73035 0.74073 0.77500 1.93603 1.85193 1.40014 1.75330 1.93601 1.64609 1.61205 1.74801 1.57313 1.23978 1.14547 1.88780 1.21488 0.87922 0.93334 1.02515 1.21607 1.03707 0.78349 1.02475 1.22284 0.95133 1.03242 0.79536 0.92565 0.93634 0.94406 0.78277 0.93512 0.90237 0.89911 0.91367 0.91319 0.87485 0.87447 0.84121 0.84190 0.92148 0.90792 0.90878 0.89470 0.91894 0.91617 0.89756 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.27 37.16 0.34 -2.38 16 2 C 0.18 3.37 2.41 -67.93 -0.16 3.21 16 3 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 4 N -0.72 -17.38 4.80 -53.42 -0.26 -17.64 16 5 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.10 -1.53 2.62 -88.47 -0.23 -1.77 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.34 5.71 -24.90 -0.14 -1.48 16 16 C 0.09 0.95 6.50 -2.98 -0.02 0.93 16 17 N -0.62 -8.56 3.33 -170.39 -0.57 -9.13 16 18 C 0.53 7.62 7.85 -10.98 -0.09 7.54 16 19 O -0.53 -9.81 16.24 5.56 0.09 -9.72 16 20 C -0.13 -1.27 4.91 -27.88 -0.14 -1.41 16 21 C -0.61 -5.29 5.47 37.16 0.20 -5.09 16 22 S 2.61 23.18 5.37 -107.50 -0.58 22.60 16 23 O -0.95 -10.89 17.09 -57.54 -0.98 -11.87 16 24 O -0.95 -10.85 16.57 -57.54 -0.95 -11.81 16 25 N -1.01 -7.16 3.52 -129.21 -0.45 -7.61 16 26 C 0.09 0.52 10.24 59.85 0.61 1.13 16 27 C 0.08 0.47 10.62 59.85 0.64 1.10 16 28 C 0.12 2.00 6.07 -2.53 -0.02 1.99 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 32 H 0.38 9.93 7.80 -40.82 -0.32 9.62 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.14 1.16 8.10 -51.92 -0.42 0.74 16 41 H 0.14 1.14 8.10 -51.92 -0.42 0.72 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 44 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 45 H 0.09 0.51 6.87 -51.93 -0.36 0.16 16 46 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 49 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -37.04 410.17 -9.67 -46.71 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.60 Total: 5.56 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.76 Total: -3.28 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.55 Total: -61.70 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.85 Total: -33.40 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 23.18 SS G_CDS: -0.58 Total: 22.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.04 -9.67 -46.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716975391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.316 kcal (2) G-P(sol) polarization free energy of solvation -37.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds