Wall clock time and date at job start Wed Apr 1 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 N 1.46502 * 109.46987 * 239.99586 * 2 1 3 5 5 C 1.36941 * 119.99779 * 85.00504 * 4 2 1 6 6 H 1.08006 * 120.00013 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99784 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47328 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47111 * 210.00371 * 9 7 5 12 12 H 1.48504 * 109.47092 * 330.00045 * 9 7 5 13 13 C 1.53005 * 109.47137 * 119.99911 * 2 1 3 14 14 H 1.08992 * 110.91574 * 57.06826 * 13 2 1 15 15 C 1.55160 * 111.00109 * 293.17005 * 13 2 1 16 16 C 1.54321 * 102.94157 * 206.42501 * 15 13 2 17 17 N 1.47188 * 107.29437 * 22.28370 * 16 15 13 18 18 C 1.34777 * 125.73634 * 181.03089 * 17 16 15 19 19 O 1.21280 * 119.99923 * 179.86277 * 18 17 16 20 20 C 1.50703 * 119.99894 * 359.85989 * 18 17 16 21 21 C 1.53004 * 109.46958 * 180.02562 * 20 18 17 22 22 S 1.81397 * 109.47005 * 180.02562 * 21 20 18 23 23 O 1.42094 * 110.54412 * 291.62341 * 22 21 20 24 24 O 1.42108 * 110.54289 * 68.37253 * 22 21 20 25 25 N 1.65607 * 104.44755 * 179.97438 * 22 21 20 26 26 C 1.46497 * 119.99641 * 90.00123 * 25 22 21 27 27 C 1.46499 * 119.99805 * 269.99908 * 25 22 21 28 28 C 1.47417 * 108.61382 * 0.91119 * 17 16 15 29 29 H 1.08997 * 109.46957 * 65.26742 * 1 2 3 30 30 H 1.08995 * 109.46867 * 185.26509 * 1 2 3 31 31 H 1.09002 * 109.46892 * 305.26975 * 1 2 3 32 32 H 0.96997 * 119.99842 * 264.99432 * 4 2 1 33 33 H 0.97003 * 119.99763 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.72138 * 324.78735 * 15 13 2 35 35 H 1.09000 * 110.72097 * 88.05797 * 15 13 2 36 36 H 1.08995 * 109.88499 * 141.61016 * 16 15 13 37 37 H 1.08999 * 109.88527 * 262.62180 * 16 15 13 38 38 H 1.08999 * 109.47089 * 300.00454 * 20 18 17 39 39 H 1.09000 * 109.47167 * 60.00707 * 20 18 17 40 40 H 1.09010 * 109.46711 * 300.00126 * 21 20 18 41 41 H 1.08999 * 109.47344 * 59.99613 * 21 20 18 42 42 H 1.09007 * 109.47023 * 90.00008 * 26 25 22 43 43 H 1.09004 * 109.46631 * 209.99920 * 26 25 22 44 44 H 1.08993 * 109.47120 * 329.99658 * 26 25 22 45 45 H 1.08997 * 109.47334 * 0.02562 * 27 25 22 46 46 H 1.09001 * 109.47016 * 120.00497 * 27 25 22 47 47 H 1.09003 * 109.47021 * 239.99859 * 27 25 22 48 48 H 1.09002 * 110.37157 * 217.11188 * 28 17 16 49 49 H 1.09007 * 110.36945 * 94.90267 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9387 -3.4495 9 14 2.7902 0.2698 -5.1183 10 1 4.1520 0.8558 -5.2032 11 1 2.5804 -0.6619 -6.2554 12 1 1.7794 1.3562 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6479 -1.7370 1.2995 15 6 1.6881 0.0749 2.5337 16 6 2.7880 -0.3625 3.5238 17 7 3.9238 -0.8537 2.7269 18 6 5.0775 -1.3456 3.2205 19 8 5.9472 -1.7252 2.4653 20 6 5.2867 -1.4239 4.7109 21 6 6.6679 -2.0145 5.0017 22 16 6.9194 -2.1094 6.7956 23 8 7.0309 -0.8071 7.3531 24 8 6.0552 -3.0805 7.3697 25 7 8.4333 -2.7586 6.9668 26 6 9.6036 -1.8800 7.0340 27 6 8.6020 -4.2114 7.0511 28 6 3.5884 -0.7207 1.2976 29 1 -0.3633 0.4299 -0.9334 30 1 -0.3633 -1.0233 0.0943 31 1 -0.3633 0.5934 0.8391 32 1 2.2491 -1.6318 -1.1525 33 1 3.2495 -2.3960 -4.2416 34 1 1.7401 1.1478 2.3488 35 1 0.7021 -0.2062 2.9037 36 1 3.1019 0.4881 4.1287 37 1 2.4119 -1.1569 4.1684 38 1 5.2218 -0.4240 5.1399 39 1 4.5191 -2.0593 5.1527 40 1 6.7331 -3.0144 4.5725 41 1 7.4352 -1.3788 4.5599 42 1 9.7990 -1.6139 8.0729 43 1 10.4703 -2.3973 6.6222 44 1 9.4124 -0.9754 6.4569 45 1 7.6275 -4.6949 6.9830 46 1 9.2343 -4.5519 6.2311 47 1 9.0699 -4.4683 8.0015 48 1 3.9857 -1.5651 0.7344 49 1 3.9799 0.2164 0.9016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716975391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:35 Heat of formation + Delta-G solvation = -119.336658 kcal Electronic energy + Delta-G solvation = -28891.080265 eV Core-core repulsion = 24786.669516 eV Total energy + Delta-G solvation = -4104.410749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22418 -39.17392 -38.32912 -37.27154 -36.91757 -36.79446 -34.49117 -34.09138 -32.00169 -30.01878 -29.75521 -28.96795 -26.67769 -25.85754 -25.48330 -23.87969 -22.85155 -21.08424 -20.28524 -19.96365 -19.22291 -18.77879 -18.20653 -17.69009 -17.34659 -17.09958 -16.75995 -16.53011 -15.92340 -15.57385 -15.45410 -15.31084 -15.17202 -14.81396 -14.44312 -14.14137 -14.05784 -13.94362 -13.60490 -13.52856 -13.49288 -13.39976 -13.34978 -13.23356 -13.09631 -12.86910 -12.69232 -12.62903 -12.58273 -12.53436 -12.36049 -12.20247 -12.06781 -11.96091 -11.68873 -11.52852 -11.37930 -11.04322 -10.93346 -10.03446 -9.71172 -8.99100 -7.93106 -5.20489 -0.88424 1.45410 1.47032 1.49365 1.54950 1.55351 1.91864 2.55962 2.72980 3.08014 3.22849 3.39279 3.43868 3.65815 3.72583 3.75155 3.84542 3.88141 4.17192 4.25606 4.32011 4.40694 4.45580 4.48604 4.56440 4.58627 4.64974 4.72771 4.74504 4.77842 4.87896 4.89847 4.95773 4.98434 5.00563 5.04671 5.11078 5.12919 5.23684 5.34490 5.42127 5.52572 5.53340 5.66113 6.29366 6.47990 7.03193 7.35023 8.13222 8.33945 9.30631 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017655 B = 0.002106 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.547674 B =13289.070435 C =14290.290425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.968 3.032 10 H -0.292 1.292 11 H -0.298 1.298 12 H -0.267 1.267 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.113 4.113 16 C 0.087 3.913 17 N -0.619 5.619 18 C 0.523 3.477 19 O -0.587 6.587 20 C -0.131 4.131 21 C -0.609 4.609 22 S 2.634 3.366 23 O -0.976 6.976 24 O -0.977 6.977 25 N -1.009 6.009 26 C 0.082 3.918 27 C 0.075 3.925 28 C 0.124 3.876 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.369 0.631 33 H 0.248 0.752 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.037 0.963 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 0.782 27.174 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.798 3.202 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.192 1.192 13 C -0.114 4.114 14 H 0.095 0.905 15 C -0.151 4.151 16 C -0.034 4.034 17 N -0.352 5.352 18 C 0.312 3.688 19 O -0.468 6.468 20 C -0.172 4.172 21 C -0.739 4.739 22 S 2.727 3.273 23 O -0.967 6.967 24 O -0.967 6.967 25 N -0.849 5.849 26 C -0.063 4.063 27 C -0.070 4.070 28 C 0.001 3.999 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.709 0.959 27.433 28.258 hybrid contribution 0.718 -0.381 -2.394 2.528 sum 7.427 0.578 25.040 26.124 Atomic orbital electron populations 1.22269 0.96930 1.01075 1.00973 1.20443 0.93218 0.94748 0.84633 0.93571 1.42667 1.78467 1.10242 1.06449 1.19596 1.34221 0.94099 0.88283 0.90545 1.25523 1.03412 0.96845 1.01464 1.69823 1.52975 1.10292 1.29236 0.85213 0.77746 0.77521 0.79761 1.21903 1.22512 1.19167 1.22507 0.92295 1.00556 0.96031 0.90502 1.22721 0.99502 1.00854 0.92039 1.22539 0.85350 1.00934 0.94537 1.48752 1.16528 1.61825 1.08093 1.20612 0.80293 0.76404 0.91468 1.90713 1.43829 1.50516 1.61738 1.21490 0.96814 1.06197 0.92689 1.30477 1.04901 1.12064 1.26440 1.04310 0.72991 0.73020 0.76992 1.93565 1.85739 1.41352 1.76000 1.93564 1.65917 1.61772 1.75487 1.57196 1.23685 1.15383 1.88605 1.21709 0.88035 0.93591 1.02947 1.21802 1.03954 0.77373 1.03847 1.21961 0.96473 1.00096 0.81399 0.94927 0.93820 0.90095 0.79928 0.94319 0.89356 0.86890 0.88299 0.88491 0.84782 0.84907 0.84016 0.83930 0.91999 0.88723 0.90616 0.89981 0.90188 0.90552 0.94411 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 9.27 71.98 0.67 -4.11 16 2 C 0.18 6.40 2.41 44.99 0.11 6.51 16 3 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 4 N -0.74 -36.38 4.80 -322.92 -1.55 -37.94 16 5 C -0.23 -12.65 9.93 84.03 0.83 -11.82 16 6 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 8 N -0.97 -60.83 13.06 21.65 0.28 -60.54 16 9 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C -0.09 -2.72 2.62 -9.40 -0.02 -2.75 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.11 -2.00 5.71 31.78 0.18 -1.82 16 16 C 0.09 1.41 6.50 86.70 0.56 1.98 16 17 N -0.62 -16.52 3.33 -811.39 -2.70 -19.22 16 18 C 0.52 14.73 7.85 87.66 0.69 15.42 16 19 O -0.59 -22.42 16.24 -3.03 -0.05 -22.47 16 20 C -0.13 -2.27 4.91 29.85 0.15 -2.12 16 21 C -0.61 -9.82 5.47 71.98 0.39 -9.43 16 22 S 2.63 43.06 5.37 -56.49 -0.30 42.75 16 23 O -0.98 -20.89 17.09 -127.65 -2.18 -23.08 16 24 O -0.98 -20.94 16.57 -127.65 -2.11 -23.06 16 25 N -1.01 -12.89 3.52 -562.69 -1.98 -14.87 16 26 C 0.08 0.79 10.24 127.77 1.31 2.10 16 27 C 0.08 0.73 10.62 127.77 1.36 2.08 16 28 C 0.12 4.28 6.07 86.86 0.53 4.81 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.84 7.69 -2.39 -0.02 1.82 16 32 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16 33 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.09 1.46 8.01 -2.39 -0.02 1.44 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.14 2.26 8.10 -2.39 -0.02 2.24 16 41 H 0.14 2.23 8.10 -2.39 -0.02 2.21 16 42 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.09 0.51 8.07 -2.38 -0.02 0.49 16 44 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 45 H 0.08 0.89 6.87 -2.39 -0.02 0.87 16 46 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 49 H 0.05 1.97 8.03 -2.38 -0.02 1.95 16 Total: -1.00 -84.55 410.17 -1.15 -85.71 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.20 Total: 27.14 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 7.22 Total: -3.36 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -5.95 Total: -132.57 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -4.35 Total: -68.60 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 16 Polarization: 43.06 SS G_CDS: -0.30 Total: 42.75 kcal Total: -84.55 -1.15 -85.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716975391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.631 kcal (2) G-P(sol) polarization free energy of solvation -84.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds