Wall clock time and date at job start Wed Apr 1 2020 05:31:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47416 * 2 1
4 4 N 1.46500 * 109.47181 * 239.99570 * 2 1 3
5 5 C 1.36944 * 119.99721 * 85.00169 * 4 2 1
6 6 H 1.08002 * 119.99632 * 0.02562 * 5 4 2
7 7 C 1.38811 * 119.99886 * 179.97438 * 5 4 2
8 8 N 1.31612 * 120.00146 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99754 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47244 * 90.00615 * 9 7 5
11 11 H 1.48501 * 109.47080 * 210.00636 * 9 7 5
12 12 H 1.48503 * 109.47375 * 330.00465 * 9 7 5
13 13 C 1.53005 * 109.47077 * 119.99818 * 2 1 3
14 14 H 1.09009 * 110.88165 * 57.57368 * 13 2 1
15 15 C 1.55151 * 111.00394 * 181.45053 * 13 2 1
16 16 C 1.54325 * 102.94027 * 153.57889 * 15 13 2
17 17 N 1.47015 * 107.27269 * 337.80777 * 16 15 13
18 18 C 1.34783 * 125.65394 * 178.90651 * 17 16 15
19 19 O 1.21273 * 120.00546 * 180.02562 * 18 17 16
20 20 C 1.50706 * 119.99299 * 0.02562 * 18 17 16
21 21 C 1.53003 * 109.46666 * 180.02562 * 20 18 17
22 22 S 1.81392 * 109.46872 * 179.97438 * 21 20 18
23 23 O 1.42104 * 110.54463 * 68.37807 * 22 21 20
24 24 O 1.42095 * 110.54696 * 291.62440 * 22 21 20
25 25 N 1.65606 * 104.45119 * 180.02562 * 22 21 20
26 26 C 1.46499 * 120.00003 * 89.99796 * 25 22 21
27 27 C 1.46502 * 119.99935 * 270.00294 * 25 22 21
28 28 C 1.47430 * 108.70284 * 359.17023 * 17 16 15
29 29 H 1.08992 * 109.47041 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46684 * 300.00221 * 1 2 3
31 31 H 1.08998 * 109.46625 * 59.99852 * 1 2 3
32 32 H 0.96995 * 120.00210 * 265.00377 * 4 2 1
33 33 H 0.97006 * 120.00291 * 179.97438 * 8 7 5
34 34 H 1.09001 * 110.72469 * 35.21558 * 15 13 2
35 35 H 1.09005 * 110.87566 * 272.00967 * 15 13 2
36 36 H 1.09000 * 109.88319 * 218.38834 * 16 15 13
37 37 H 1.09003 * 109.88186 * 97.22637 * 16 15 13
38 38 H 1.09004 * 109.46978 * 60.00852 * 20 18 17
39 39 H 1.08997 * 109.47120 * 299.99998 * 20 18 17
40 40 H 1.08998 * 109.46844 * 60.00291 * 21 20 18
41 41 H 1.09000 * 109.47341 * 300.00398 * 21 20 18
42 42 H 1.09002 * 109.47391 * 270.00374 * 26 25 22
43 43 H 1.09001 * 109.46813 * 150.00430 * 26 25 22
44 44 H 1.09004 * 109.47041 * 30.00557 * 26 25 22
45 45 H 1.09001 * 109.47274 * 179.97438 * 27 25 22
46 46 H 1.09000 * 109.47166 * 299.99912 * 27 25 22
47 47 H 1.09004 * 109.47230 * 59.99863 * 27 25 22
48 48 H 1.08997 * 110.36865 * 142.74358 * 28 17 16
49 49 H 1.09006 * 110.36493 * 265.06196 * 28 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1492 -0.0076 -2.3758
6 1 1.8927 1.0405 -2.4241
7 6 2.6124 -0.6618 -3.5090
8 7 2.9254 -1.9388 -3.4499
9 14 2.7915 0.2702 -5.1179
10 1 4.1538 0.8552 -5.2021
11 1 2.5814 -0.6610 -6.2554
12 1 1.7815 1.3574 -5.1753
13 6 2.0400 -0.7212 1.2493
14 1 1.6546 -1.7399 1.2944
15 6 3.5905 -0.7103 1.3037
16 6 3.8840 -0.8150 2.8152
17 7 2.6859 -0.3454 3.5261
18 6 2.5337 -0.3005 4.8645
19 8 1.4968 0.1070 5.3436
20 6 3.6521 -0.7568 5.7657
21 6 3.2242 -0.6042 7.2267
22 16 4.5700 -1.1541 8.3115
23 8 5.6721 -0.2607 8.2309
24 8 4.7561 -2.5586 8.2026
25 7 3.9801 -0.9386 9.8438
26 6 3.2496 -2.0218 10.5066
27 6 4.1886 0.3354 10.5365
28 6 1.6761 0.0624 2.5324
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3632 0.5139 -0.8900
32 1 2.2490 -1.6318 -1.1525
33 1 3.2487 -2.3962 -4.2419
34 1 3.9842 0.2217 0.8981
35 1 4.0039 -1.5664 0.7704
36 1 4.7372 -0.1870 3.0715
37 1 4.0908 -1.8516 3.0817
38 1 4.5383 -0.1496 5.5810
39 1 3.8794 -1.8031 5.5614
40 1 2.3382 -1.2117 7.4111
41 1 2.9965 0.4419 7.4313
42 1 2.1867 -1.9343 10.2813
43 1 3.3994 -1.9548 11.5842
44 1 3.6193 -2.9823 10.1474
45 1 3.7327 0.2900 11.5256
46 1 5.2575 0.5236 10.6370
47 1 3.7303 1.1405 9.9622
48 1 0.6771 -0.2096 2.8731
49 1 1.7361 1.1352 2.3488
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001716975392.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:40
Heat of formation + Delta-G solvation = -91.646908 kcal
Electronic energy + Delta-G solvation = -28722.987936 eV
Core-core repulsion = 24619.777905 eV
Total energy + Delta-G solvation = -4103.210031 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.96 seconds
Orbital eigenvalues (eV)
-40.21452 -37.99293 -37.56144 -36.69963 -36.26175 -35.26432 -33.58107 -32.41622
-30.56216 -29.33391 -28.56629 -27.67065 -25.90014 -25.06696 -24.08684 -22.75944
-21.48711 -19.68765 -19.37340 -19.30684 -18.20349 -17.46807 -17.13379 -16.92034
-16.45562 -16.26252 -15.81394 -15.20187 -14.89880 -14.73323 -14.47761 -14.00419
-13.69526 -13.60210 -13.50552 -13.23737 -13.16170 -13.01329 -12.74241 -12.64028
-12.61079 -12.49543 -12.45319 -12.15140 -12.05858 -11.99800 -11.90388 -11.76053
-11.28731 -11.23497 -10.91528 -10.74678 -10.61953 -10.43568 -10.23996 -10.07314
-9.87897 -9.66800 -9.54148 -8.94787 -8.70529 -6.99903 -5.79993 -3.08554
-0.22285 2.14267 2.44488 2.84165 3.39552 3.41031 3.46892 3.48086
3.71731 3.94482 4.19970 4.33645 4.34944 4.54679 4.75036 4.81933
4.84650 4.88716 4.95615 5.00660 5.09296 5.12423 5.27326 5.30109
5.32673 5.34326 5.44780 5.46664 5.50911 5.64072 5.83404 5.85286
5.93022 5.97424 6.02586 6.15375 6.18585 6.35533 6.40284 6.55814
6.60225 6.83181 7.06013 7.41546 7.67357 7.98701 8.38449 9.50053
10.06695 10.41744 11.42527
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028041 B = 0.001836 C = 0.001788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 998.295679 B =15243.219375 C =15653.223817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.185 3.815
3 H 0.049 0.951
4 N -0.722 5.722
5 C -0.237 4.237
6 H 0.070 0.930
7 C -0.013 4.013
8 N -0.932 5.932
9 Si 0.905 3.095
10 H -0.290 1.290
11 H -0.292 1.292
12 H -0.283 1.283
13 C -0.103 4.103
14 H 0.081 0.919
15 C -0.115 4.115
16 C 0.091 3.909
17 N -0.614 5.614
18 C 0.535 3.465
19 O -0.543 6.543
20 C -0.131 4.131
21 C -0.611 4.611
22 S 2.612 3.388
23 O -0.950 6.950
24 O -0.951 6.951
25 N -1.009 6.009
26 C 0.081 3.919
27 C 0.089 3.911
28 C 0.114 3.886
29 H 0.046 0.954
30 H 0.037 0.963
31 H 0.054 0.946
32 H 0.384 0.616
33 H 0.255 0.745
34 H 0.081 0.919
35 H 0.089 0.911
36 H 0.069 0.931
37 H 0.070 0.930
38 H 0.109 0.891
39 H 0.109 0.891
40 H 0.139 0.861
41 H 0.139 0.861
42 H 0.056 0.944
43 H 0.076 0.924
44 H 0.085 0.915
45 H 0.080 0.920
46 H 0.069 0.931
47 H 0.060 0.940
48 H 0.077 0.923
49 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.843 1.824 28.717 28.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.075 3.925
3 H 0.067 0.933
4 N -0.363 5.363
5 C -0.368 4.368
6 H 0.088 0.912
7 C -0.209 4.209
8 N -0.581 5.581
9 Si 0.737 3.263
10 H -0.218 1.218
11 H -0.218 1.218
12 H -0.208 1.208
13 C -0.123 4.123
14 H 0.099 0.901
15 C -0.153 4.153
16 C -0.032 4.032
17 N -0.348 5.348
18 C 0.322 3.678
19 O -0.420 6.420
20 C -0.173 4.173
21 C -0.740 4.740
22 S 2.704 3.296
23 O -0.940 6.940
24 O -0.941 6.941
25 N -0.847 5.847
26 C -0.065 4.065
27 C -0.056 4.056
28 C -0.009 4.009
29 H 0.066 0.934
30 H 0.056 0.944
31 H 0.073 0.927
32 H 0.217 0.783
33 H 0.065 0.935
34 H 0.099 0.901
35 H 0.107 0.893
36 H 0.088 0.912
37 H 0.088 0.912
38 H 0.127 0.873
39 H 0.127 0.873
40 H 0.158 0.842
41 H 0.157 0.843
42 H 0.074 0.926
43 H 0.095 0.905
44 H 0.104 0.896
45 H 0.099 0.901
46 H 0.087 0.913
47 H 0.078 0.922
48 H 0.095 0.905
49 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 2.142 1.837 28.736 28.874
hybrid contribution -0.582 0.414 -1.064 1.281
sum 1.560 2.250 27.672 27.807
Atomic orbital electron populations
1.22490 0.99237 1.00967 1.00073 1.20127 0.91802 0.95151 0.85424
0.93275 1.42359 1.78163 1.10651 1.05114 1.19213 1.36438 0.93836
0.87294 0.91236 1.24719 1.02232 0.95961 0.98011 1.69650 1.50929
1.08609 1.28902 0.86218 0.77757 0.78602 0.83768 1.21770 1.21842
1.20832 1.22642 0.95424 1.00127 0.94124 0.90085 1.22569 0.96166
1.04455 0.92108 1.22299 0.87390 0.99467 0.94056 1.48578 1.17765
1.63711 1.04754 1.19757 0.88393 0.78457 0.81154 1.90694 1.29353
1.47554 1.74435 1.21339 0.99536 1.04995 0.91416 1.30452 1.20631
1.14422 1.08527 1.05082 0.75893 0.74608 0.73990 1.93605 1.47857
1.67005 1.85559 1.93598 1.84941 1.30128 1.85445 1.57314 1.72929
1.22040 1.32462 1.21684 0.95925 0.89797 0.99064 1.21569 1.02422
0.83330 0.98283 1.22302 0.92061 0.99266 0.87249 0.93446 0.94433
0.92691 0.78275 0.93539 0.90061 0.89266 0.91230 0.91216 0.87304
0.87274 0.84231 0.84275 0.92566 0.90527 0.89627 0.90116 0.91259
0.92168 0.90452 0.91152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 34.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.90 9.34 37.16 0.35 -2.55 16
2 C 0.19 3.39 2.41 -67.93 -0.16 3.23 16
3 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16
4 N -0.72 -16.81 4.82 -53.42 -0.26 -17.07 16
5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16
6 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16
7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16
8 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16
9 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16
10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
13 C -0.10 -1.54 2.61 -88.59 -0.23 -1.78 16
14 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16
15 C -0.12 -1.59 6.13 -24.90 -0.15 -1.74 16
16 C 0.09 1.00 6.49 -3.07 -0.02 0.98 16
17 N -0.61 -7.82 3.33 -170.66 -0.57 -8.39 16
18 C 0.54 6.85 7.85 -10.98 -0.09 6.77 16
19 O -0.54 -8.59 16.24 5.56 0.09 -8.50 16
20 C -0.13 -1.20 4.90 -27.88 -0.14 -1.33 16
21 C -0.61 -4.74 5.47 37.16 0.20 -4.53 16
22 S 2.61 22.00 5.42 -107.50 -0.58 21.41 16
23 O -0.95 -10.60 17.11 -57.54 -0.98 -11.59 16
24 O -0.95 -10.57 16.57 -57.54 -0.95 -11.53 16
25 N -1.01 -6.46 3.52 -129.20 -0.45 -6.91 16
26 C 0.08 0.39 10.61 59.85 0.63 1.02 16
27 C 0.09 0.43 10.26 59.85 0.61 1.04 16
28 C 0.11 1.57 5.55 -2.65 -0.01 1.55 16
29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.04 0.55 7.46 -51.93 -0.39 0.16 16
31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
32 H 0.38 9.53 7.80 -40.82 -0.32 9.21 16
33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16
34 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16
35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16
40 H 0.14 1.00 8.10 -51.92 -0.42 0.58 16
41 H 0.14 0.98 8.10 -51.92 -0.42 0.56 16
42 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16
43 H 0.08 0.24 7.92 -51.93 -0.41 -0.17 16
44 H 0.09 0.48 6.91 -51.93 -0.36 0.13 16
45 H 0.08 0.22 7.79 -51.93 -0.40 -0.18 16
46 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16
47 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
48 H 0.08 1.10 7.97 -51.93 -0.41 0.69 16
49 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16
LS Contribution 409.56 15.07 6.17 6.17
Total: -1.00 -35.60 409.56 -9.66 -45.26
By element:
Atomic # 1 Polarization: 13.55 SS G_CDS: -8.57 Total: 4.98 kcal
Atomic # 6 Polarization: -4.97 SS G_CDS: 0.75 Total: -4.22 kcal
Atomic # 7 Polarization: -58.30 SS G_CDS: -0.56 Total: -58.85 kcal
Atomic # 8 Polarization: -29.76 SS G_CDS: -1.85 Total: -31.61 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal
Atomic # 16 Polarization: 22.00 SS G_CDS: -0.58 Total: 21.41 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -35.60 -9.66 -45.26 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716975392.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.387 kcal
(2) G-P(sol) polarization free energy of solvation -35.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.260 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.96 seconds