Wall clock time and date at job start Wed Apr 1 2020 05:31:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47416 * 2 1
4 4 N 1.46500 * 109.47181 * 239.99570 * 2 1 3
5 5 C 1.36944 * 119.99721 * 85.00169 * 4 2 1
6 6 H 1.08002 * 119.99632 * 0.02562 * 5 4 2
7 7 C 1.38811 * 119.99886 * 179.97438 * 5 4 2
8 8 N 1.31612 * 120.00146 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99754 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47244 * 90.00615 * 9 7 5
11 11 H 1.48501 * 109.47080 * 210.00636 * 9 7 5
12 12 H 1.48503 * 109.47375 * 330.00465 * 9 7 5
13 13 C 1.53005 * 109.47077 * 119.99818 * 2 1 3
14 14 H 1.09009 * 110.88165 * 57.57368 * 13 2 1
15 15 C 1.55151 * 111.00394 * 181.45053 * 13 2 1
16 16 C 1.54325 * 102.94027 * 153.57889 * 15 13 2
17 17 N 1.47015 * 107.27269 * 337.80777 * 16 15 13
18 18 C 1.34783 * 125.65394 * 178.90651 * 17 16 15
19 19 O 1.21273 * 120.00546 * 180.02562 * 18 17 16
20 20 C 1.50706 * 119.99299 * 0.02562 * 18 17 16
21 21 C 1.53003 * 109.46666 * 180.02562 * 20 18 17
22 22 S 1.81392 * 109.46872 * 179.97438 * 21 20 18
23 23 O 1.42104 * 110.54463 * 68.37807 * 22 21 20
24 24 O 1.42095 * 110.54696 * 291.62440 * 22 21 20
25 25 N 1.65606 * 104.45119 * 180.02562 * 22 21 20
26 26 C 1.46499 * 120.00003 * 89.99796 * 25 22 21
27 27 C 1.46502 * 119.99935 * 270.00294 * 25 22 21
28 28 C 1.47430 * 108.70284 * 359.17023 * 17 16 15
29 29 H 1.08992 * 109.47041 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46684 * 300.00221 * 1 2 3
31 31 H 1.08998 * 109.46625 * 59.99852 * 1 2 3
32 32 H 0.96995 * 120.00210 * 265.00377 * 4 2 1
33 33 H 0.97006 * 120.00291 * 179.97438 * 8 7 5
34 34 H 1.09001 * 110.72469 * 35.21558 * 15 13 2
35 35 H 1.09005 * 110.87566 * 272.00967 * 15 13 2
36 36 H 1.09000 * 109.88319 * 218.38834 * 16 15 13
37 37 H 1.09003 * 109.88186 * 97.22637 * 16 15 13
38 38 H 1.09004 * 109.46978 * 60.00852 * 20 18 17
39 39 H 1.08997 * 109.47120 * 299.99998 * 20 18 17
40 40 H 1.08998 * 109.46844 * 60.00291 * 21 20 18
41 41 H 1.09000 * 109.47341 * 300.00398 * 21 20 18
42 42 H 1.09002 * 109.47391 * 270.00374 * 26 25 22
43 43 H 1.09001 * 109.46813 * 150.00430 * 26 25 22
44 44 H 1.09004 * 109.47041 * 30.00557 * 26 25 22
45 45 H 1.09001 * 109.47274 * 179.97438 * 27 25 22
46 46 H 1.09000 * 109.47166 * 299.99912 * 27 25 22
47 47 H 1.09004 * 109.47230 * 59.99863 * 27 25 22
48 48 H 1.08997 * 110.36865 * 142.74358 * 28 17 16
49 49 H 1.09006 * 110.36493 * 265.06196 * 28 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0183 -0.6907 -1.1961
5 6 2.1492 -0.0076 -2.3758
6 1 1.8927 1.0405 -2.4241
7 6 2.6124 -0.6618 -3.5090
8 7 2.9254 -1.9388 -3.4499
9 14 2.7915 0.2702 -5.1179
10 1 4.1538 0.8552 -5.2021
11 1 2.5814 -0.6610 -6.2554
12 1 1.7815 1.3574 -5.1753
13 6 2.0400 -0.7212 1.2493
14 1 1.6546 -1.7399 1.2944
15 6 3.5905 -0.7103 1.3037
16 6 3.8840 -0.8150 2.8152
17 7 2.6859 -0.3454 3.5261
18 6 2.5337 -0.3005 4.8645
19 8 1.4968 0.1070 5.3436
20 6 3.6521 -0.7568 5.7657
21 6 3.2242 -0.6042 7.2267
22 16 4.5700 -1.1541 8.3115
23 8 5.6721 -0.2607 8.2309
24 8 4.7561 -2.5586 8.2026
25 7 3.9801 -0.9386 9.8438
26 6 3.2496 -2.0218 10.5066
27 6 4.1886 0.3354 10.5365
28 6 1.6761 0.0624 2.5324
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3632 0.5139 -0.8900
32 1 2.2490 -1.6318 -1.1525
33 1 3.2487 -2.3962 -4.2419
34 1 3.9842 0.2217 0.8981
35 1 4.0039 -1.5664 0.7704
36 1 4.7372 -0.1870 3.0715
37 1 4.0908 -1.8516 3.0817
38 1 4.5383 -0.1496 5.5810
39 1 3.8794 -1.8031 5.5614
40 1 2.3382 -1.2117 7.4111
41 1 2.9965 0.4419 7.4313
42 1 2.1867 -1.9343 10.2813
43 1 3.3994 -1.9548 11.5842
44 1 3.6193 -2.9823 10.1474
45 1 3.7327 0.2900 11.5256
46 1 5.2575 0.5236 10.6370
47 1 3.7303 1.1405 9.9622
48 1 0.6771 -0.2096 2.8731
49 1 1.7361 1.1352 2.3488
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001716975392.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:39
Heat of formation + Delta-G solvation = -117.688861 kcal
Electronic energy + Delta-G solvation = -28724.117200 eV
Core-core repulsion = 24619.777905 eV
Total energy + Delta-G solvation = -4104.339295 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.24788 -39.17463 -38.30638 -37.25268 -36.89682 -36.79343 -34.48053 -34.04294
-31.87713 -30.81159 -29.00175 -28.92011 -26.83282 -25.93451 -25.42011 -23.88789
-22.80646 -21.08878 -20.28793 -19.93898 -19.18104 -18.84319 -18.18062 -17.70128
-17.35798 -17.10542 -16.76221 -16.42965 -15.91131 -15.58646 -15.40339 -15.23889
-15.07079 -14.66642 -14.58673 -14.15722 -14.02938 -13.87779 -13.81269 -13.62666
-13.52110 -13.40091 -13.25847 -13.21857 -13.18786 -12.89308 -12.76521 -12.57181
-12.54966 -12.51362 -12.30469 -12.17335 -12.02556 -11.94212 -11.65409 -11.54337
-11.37472 -11.05239 -10.90407 -9.98912 -9.71996 -8.96621 -7.90341 -5.17066
-0.86181 1.48823 1.49562 1.49827 1.57631 1.57976 1.90732 2.58555
2.74913 3.09560 3.24654 3.39148 3.44309 3.66926 3.71376 3.74008
3.86055 3.89189 4.22328 4.27183 4.30269 4.38917 4.42173 4.52497
4.55595 4.57559 4.60787 4.69306 4.73518 4.77705 4.80840 4.89092
4.99038 4.99630 5.01938 5.05222 5.05755 5.15383 5.21593 5.33711
5.38847 5.56022 5.56512 5.61193 6.31888 6.44186 7.00479 7.39111
8.15212 8.38773 9.32810
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.028041 B = 0.001836 C = 0.001788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 998.295679 B =15243.219375 C =15653.223817
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.182 3.818
3 H 0.047 0.953
4 N -0.730 5.730
5 C -0.231 4.231
6 H 0.073 0.927
7 C -0.075 4.075
8 N -0.967 5.967
9 Si 0.965 3.035
10 H -0.288 1.288
11 H -0.299 1.299
12 H -0.273 1.273
13 C -0.095 4.095
14 H 0.077 0.923
15 C -0.114 4.114
16 C 0.095 3.905
17 N -0.617 5.617
18 C 0.533 3.467
19 O -0.577 6.577
20 C -0.138 4.138
21 C -0.603 4.603
22 S 2.629 3.371
23 O -0.980 6.980
24 O -0.981 6.981
25 N -1.009 6.009
26 C 0.072 3.928
27 C 0.079 3.921
28 C 0.120 3.880
29 H 0.041 0.959
30 H 0.066 0.934
31 H 0.036 0.964
32 H 0.374 0.626
33 H 0.249 0.751
34 H 0.070 0.930
35 H 0.077 0.923
36 H 0.094 0.906
37 H 0.090 0.910
38 H 0.129 0.871
39 H 0.128 0.872
40 H 0.146 0.854
41 H 0.147 0.853
42 H 0.071 0.929
43 H 0.095 0.905
44 H 0.073 0.927
45 H 0.104 0.896
46 H 0.059 0.941
47 H 0.070 0.930
48 H 0.073 0.927
49 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.783 2.688 30.506 30.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.073 3.927
3 H 0.065 0.935
4 N -0.370 5.370
5 C -0.363 4.363
6 H 0.091 0.909
7 C -0.267 4.267
8 N -0.618 5.618
9 Si 0.795 3.205
10 H -0.216 1.216
11 H -0.226 1.226
12 H -0.198 1.198
13 C -0.115 4.115
14 H 0.095 0.905
15 C -0.152 4.152
16 C -0.027 4.027
17 N -0.350 5.350
18 C 0.322 3.678
19 O -0.457 6.457
20 C -0.179 4.179
21 C -0.733 4.733
22 S 2.723 3.277
23 O -0.970 6.970
24 O -0.971 6.971
25 N -0.849 5.849
26 C -0.073 4.073
27 C -0.066 4.066
28 C -0.003 4.003
29 H 0.061 0.939
30 H 0.085 0.915
31 H 0.055 0.945
32 H 0.206 0.794
33 H 0.058 0.942
34 H 0.089 0.911
35 H 0.095 0.905
36 H 0.112 0.888
37 H 0.109 0.891
38 H 0.147 0.853
39 H 0.146 0.854
40 H 0.165 0.835
41 H 0.165 0.835
42 H 0.090 0.910
43 H 0.114 0.886
44 H 0.092 0.908
45 H 0.122 0.878
46 H 0.078 0.922
47 H 0.089 0.911
48 H 0.091 0.909
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 2.087 2.727 30.563 30.755
hybrid contribution -0.635 0.193 -1.529 1.667
sum 1.453 2.920 29.034 29.216
Atomic orbital electron populations
1.22360 0.98192 1.00800 1.00578 1.20302 0.92357 0.94906 0.85116
0.93534 1.42503 1.78312 1.10280 1.05904 1.19549 1.34381 0.94021
0.88322 0.90918 1.25431 1.03368 0.96817 1.01069 1.69793 1.52818
1.09988 1.29213 0.85257 0.77767 0.77437 0.80007 1.21554 1.22635
1.19818 1.22427 0.96342 0.99561 0.93166 0.90475 1.22485 0.95020
1.03347 0.94303 1.22361 0.87392 1.01352 0.91582 1.48633 1.17835
1.63636 1.04873 1.20334 0.88750 0.77624 0.81119 1.90677 1.30961
1.49145 1.74933 1.21509 0.98791 1.06458 0.91162 1.30386 1.20295
1.15098 1.07504 1.04369 0.75593 0.73380 0.74360 1.93562 1.49758
1.67478 1.86238 1.93556 1.85605 1.31839 1.86125 1.57164 1.73007
1.23038 1.31684 1.21878 0.96562 0.88754 1.00070 1.21785 1.02298
0.82856 0.99629 1.22125 0.92345 0.99041 0.86838 0.93941 0.91524
0.94516 0.79432 0.94236 0.91140 0.90467 0.88782 0.89142 0.85286
0.85437 0.83535 0.83461 0.91006 0.88618 0.90780 0.87751 0.92186
0.91104 0.90869 0.91007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.40 9.34 71.98 0.67 -4.73 16
2 C 0.18 6.57 2.41 44.99 0.11 6.68 16
3 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16
4 N -0.73 -34.24 4.82 -322.92 -1.56 -35.79 16
5 C -0.23 -12.23 9.93 84.03 0.83 -11.39 16
6 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16
7 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16
8 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16
9 Si 0.97 45.28 29.55 68.60 2.03 47.31 16
10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16
11 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16
12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
13 C -0.10 -2.77 2.61 -9.48 -0.02 -2.79 16
14 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16
15 C -0.11 -3.02 6.13 31.78 0.19 -2.83 16
16 C 0.10 1.87 6.49 86.73 0.56 2.43 16
17 N -0.62 -14.36 3.33 -812.23 -2.70 -17.07 16
18 C 0.53 12.48 7.85 87.66 0.69 13.17 16
19 O -0.58 -17.32 16.24 -3.01 -0.05 -17.37 16
20 C -0.14 -2.16 4.90 29.85 0.15 -2.01 16
21 C -0.60 -8.08 5.47 71.98 0.39 -7.69 16
22 S 2.63 40.72 5.42 -56.49 -0.31 40.41 16
23 O -0.98 -20.84 17.11 -127.65 -2.18 -23.03 16
24 O -0.98 -20.90 16.57 -127.65 -2.12 -23.02 16
25 N -1.01 -11.20 3.52 -562.67 -1.98 -13.18 16
26 C 0.07 0.56 10.61 127.77 1.36 1.92 16
27 C 0.08 0.61 10.26 127.77 1.31 1.92 16
28 C 0.12 3.12 5.55 86.78 0.48 3.60 16
29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.07 1.86 7.46 -2.38 -0.02 1.84 16
31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.37 18.89 7.80 -92.71 -0.72 18.17 16
33 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16
34 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16
35 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16
36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
38 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16
39 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16
40 H 0.15 1.79 8.10 -2.39 -0.02 1.77 16
41 H 0.15 1.76 8.10 -2.39 -0.02 1.74 16
42 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16
43 H 0.10 0.37 7.92 -2.39 -0.02 0.35 16
44 H 0.07 0.76 6.91 -2.38 -0.02 0.75 16
45 H 0.10 0.30 7.79 -2.39 -0.02 0.28 16
46 H 0.06 0.58 7.90 -2.39 -0.02 0.56 16
47 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16
48 H 0.07 1.98 7.97 -2.39 -0.02 1.96 16
49 H 0.07 1.86 8.00 -2.38 -0.02 1.84 16
Total: -1.00 -76.54 409.56 -1.19 -77.73
By element:
Atomic # 1 Polarization: 26.31 SS G_CDS: 0.20 Total: 26.52 kcal
Atomic # 6 Polarization: -12.61 SS G_CDS: 7.19 Total: -5.42 kcal
Atomic # 7 Polarization: -117.18 SS G_CDS: -5.95 Total: -123.13 kcal
Atomic # 8 Polarization: -59.07 SS G_CDS: -4.35 Total: -63.41 kcal
Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal
Atomic # 16 Polarization: 40.72 SS G_CDS: -0.31 Total: 40.41 kcal
Total: -76.54 -1.19 -77.73 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716975392.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.957 kcal
(2) G-P(sol) polarization free energy of solvation -76.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds