Wall clock time and date at job start Wed Apr 1 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47210 * 2 1 4 4 N 1.46493 * 109.47340 * 119.99622 * 2 1 3 5 5 S 1.65594 * 120.00450 * 265.00233 * 4 2 1 6 6 C 1.81407 * 104.44951 * 64.99675 * 5 4 2 7 7 O 1.42100 * 104.27876 * 308.92660 * 5 4 2 8 8 O 1.42098 * 104.28249 * 181.06998 * 5 4 2 9 9 C 1.50703 * 109.47278 * 239.99943 * 2 1 3 10 10 O 1.21281 * 119.99626 * 258.30759 * 9 2 1 11 11 N 1.34774 * 120.00069 * 78.30690 * 9 2 1 12 12 C 1.46501 * 120.00271 * 184.45730 * 11 9 2 13 13 C 1.46504 * 119.99765 * 4.46000 * 11 9 2 14 14 C 1.53000 * 109.46691 * 234.39132 * 13 11 9 15 15 C 1.53003 * 109.47244 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46883 * 60.00235 * 15 14 13 17 17 N 1.46504 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99624 * 274.99966 * 17 16 15 19 19 H 1.07998 * 119.99855 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99942 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47123 * 90.00038 * 22 20 18 24 24 H 1.48505 * 109.47004 * 210.00223 * 22 20 18 25 25 H 1.48501 * 109.46876 * 329.99786 * 22 20 18 26 26 C 1.53000 * 109.46989 * 299.99921 * 16 15 14 27 27 C 1.53002 * 109.47127 * 114.39555 * 13 11 9 28 28 H 1.08998 * 109.47043 * 296.13262 * 1 2 3 29 29 H 1.09007 * 109.47288 * 56.12930 * 1 2 3 30 30 H 1.09002 * 109.47240 * 176.12796 * 1 2 3 31 31 H 0.97001 * 119.99774 * 84.99787 * 4 2 1 32 32 H 1.08998 * 109.47147 * 300.00244 * 6 5 4 33 33 H 1.08999 * 109.46944 * 60.00090 * 6 5 4 34 34 H 1.09007 * 109.47102 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47143 * 88.89416 * 12 11 9 36 36 H 1.08994 * 109.47116 * 208.89964 * 12 11 9 37 37 H 1.09003 * 109.46667 * 328.89531 * 12 11 9 38 38 H 1.08995 * 109.47365 * 354.39303 * 13 11 9 39 39 H 1.08999 * 109.47822 * 300.00277 * 14 13 11 40 40 H 1.09002 * 109.47208 * 60.00545 * 14 13 11 41 41 H 1.09007 * 109.46713 * 300.00514 * 15 14 13 42 42 H 1.08997 * 109.47706 * 180.02562 * 15 14 13 43 43 H 1.08995 * 109.47204 * 60.00177 * 16 15 14 44 44 H 0.96993 * 120.00234 * 94.99806 * 17 16 15 45 45 H 0.96994 * 120.00349 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.47822 * 300.00062 * 26 16 15 47 47 H 1.09002 * 109.47208 * 179.97438 * 26 16 15 48 48 H 1.08995 * 109.47141 * 299.99426 * 27 13 11 49 49 H 1.08999 * 109.46889 * 60.00027 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 16 2.4121 0.1772 2.5504 6 6 0.8407 0.8990 3.0984 7 8 3.2874 1.1907 2.0751 8 8 2.8606 -0.8027 3.4766 9 6 2.0323 -0.7104 -1.2305 10 8 2.4351 -1.8515 -1.1498 11 7 2.0340 -0.0777 -2.4205 12 6 2.4298 -0.7986 -3.6329 13 6 1.6399 1.3310 -2.5016 14 6 0.5198 1.4886 -3.5318 15 6 0.1086 2.9599 -3.6171 16 6 1.3134 3.8024 -4.0407 17 7 0.9199 5.2113 -4.1218 18 6 0.3444 5.6966 -5.2656 19 1 0.1802 5.0407 -6.1078 20 6 -0.0290 7.0314 -5.3423 21 7 0.1706 7.8306 -4.3158 22 14 -0.8134 7.6936 -6.9030 23 1 -2.2883 7.5433 -6.8179 24 1 -0.4703 9.1301 -7.0583 25 1 -0.3051 6.9339 -8.0733 26 6 2.4335 3.6448 -3.0105 27 6 2.8445 2.1740 -2.9249 28 1 -0.3633 0.4526 0.9226 29 1 -0.3634 0.5728 -0.8533 30 1 -0.3634 -1.0253 -0.0694 31 1 2.1109 -1.6561 1.1949 32 1 0.4386 1.5353 2.3101 33 1 0.1315 0.1011 3.3184 34 1 1.0076 1.4940 3.9964 35 1 1.5547 -1.2756 -4.0740 36 1 2.8608 -0.0978 -4.3478 37 1 3.1686 -1.5587 -3.3787 38 1 1.2865 1.6662 -1.5265 39 1 0.8731 1.1535 -4.5070 40 1 -0.3384 0.8881 -3.2302 41 1 -0.2446 3.2955 -2.6420 42 1 -0.6897 3.0722 -4.3507 43 1 1.6667 3.4668 -5.0157 44 1 1.0670 5.8002 -3.3653 45 1 -0.0906 8.7632 -4.3692 46 1 2.0804 3.9804 -2.0354 47 1 3.2921 4.2446 -3.3125 48 1 3.6425 2.0617 -2.1909 49 1 3.1978 1.8388 -3.9000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717448240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:14 Heat of formation + Delta-G solvation = -98.802099 kcal Electronic energy + Delta-G solvation = -30183.397802 eV Core-core repulsion = 26079.877498 eV Total energy + Delta-G solvation = -4103.520304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.68782 -38.40760 -37.44235 -36.29037 -35.96789 -35.50729 -33.29697 -30.79936 -30.67765 -30.52854 -29.88371 -27.89237 -27.14327 -24.17417 -23.55737 -22.38152 -21.47535 -20.02894 -19.61862 -19.43550 -18.37025 -17.28385 -17.10719 -16.64494 -16.54061 -15.95084 -15.62017 -15.26035 -14.96028 -14.40367 -14.19182 -14.01121 -13.88336 -13.83956 -13.65162 -13.55753 -13.06572 -12.94380 -12.71462 -12.57327 -12.41429 -12.36903 -12.33948 -12.23098 -12.16342 -12.05600 -11.89398 -11.40865 -11.35950 -11.03396 -10.89299 -10.86798 -10.70708 -10.32560 -10.26978 -10.19307 -9.84489 -9.77666 -9.62260 -8.93526 -8.76711 -7.00201 -5.80727 -3.09543 -0.12239 2.19157 2.36926 2.79064 3.39764 3.44615 3.45405 3.46957 3.82298 3.99793 4.33932 4.42641 4.52861 4.54522 4.57809 4.64395 4.86026 4.87391 5.03779 5.12594 5.20334 5.31371 5.35415 5.38828 5.42786 5.46720 5.53938 5.57995 5.63969 5.70962 5.73845 5.78394 5.92273 6.07029 6.19573 6.24333 6.32410 6.43153 6.46047 6.60707 6.62040 6.89362 7.03329 7.16253 7.65990 7.87948 8.38074 9.49270 10.07247 10.41459 11.41860 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.002634 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.801368 B =10627.925134 C =11650.091932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 H 0.117 0.883 4 N -1.103 6.103 5 S 2.613 3.387 6 C -0.676 4.676 7 O -0.951 6.951 8 O -0.956 6.956 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.603 5.603 12 C 0.083 3.917 13 C 0.129 3.871 14 C -0.123 4.123 15 C -0.133 4.133 16 C 0.177 3.823 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.122 4.122 27 C -0.125 4.125 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.426 0.574 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -17.686 11.388 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 H 0.135 0.865 4 N -0.863 5.863 5 S 2.704 3.296 6 C -0.826 4.826 7 O -0.941 6.941 8 O -0.946 6.946 9 C 0.304 3.696 10 O -0.413 6.413 11 N -0.335 5.335 12 C -0.059 4.059 13 C 0.026 3.974 14 C -0.163 4.163 15 C -0.174 4.174 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.161 4.161 27 C -0.164 4.164 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.296 -17.968 11.614 21.434 hybrid contribution -1.242 0.439 -0.747 1.514 sum 0.054 -17.528 10.867 20.624 Atomic orbital electron populations 1.22445 0.92520 1.04424 1.04205 1.20773 0.95761 0.97466 0.84778 0.86498 1.55483 1.83971 1.20914 1.25976 1.04811 0.76755 0.74602 0.73384 1.30661 1.24328 1.14311 1.13288 1.93649 1.60697 1.60604 1.79171 1.93629 1.79476 1.58897 1.62632 1.20378 0.78131 0.86721 0.84359 1.90674 1.47138 1.18186 1.85350 1.47977 1.66213 1.12120 1.07233 1.21640 1.00611 0.97315 0.86346 1.21557 0.95899 0.78898 1.01049 1.21904 0.96807 0.98886 0.98653 1.22266 1.01156 0.92013 1.01992 1.20233 0.90967 0.86238 0.95893 1.42427 1.73060 1.04356 1.16689 1.19223 1.31809 0.93153 0.92785 0.91242 1.24736 1.02122 0.96431 0.97644 1.69653 1.53227 1.05263 1.29936 0.86226 0.79109 0.78197 0.82863 1.21777 1.21800 1.20796 1.21783 0.99873 0.93992 1.00473 1.21879 0.96755 0.95764 1.02036 0.90732 0.89766 0.90738 0.73696 0.84943 0.84996 0.85016 0.92569 0.90595 0.90686 0.88964 0.91538 0.92249 0.92447 0.91497 0.93555 0.78267 0.93509 0.91938 0.91255 0.91687 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.25 37.15 0.34 -0.77 16 2 C 0.12 1.08 2.35 -69.09 -0.16 0.92 16 3 H 0.12 0.96 5.96 -51.92 -0.31 0.65 16 4 N -1.10 -9.29 5.27 -5.88 -0.03 -9.32 16 5 S 2.61 21.86 6.08 -107.50 -0.65 21.21 16 6 C -0.68 -2.92 9.95 101.05 1.01 -1.92 16 7 O -0.95 -11.60 17.39 -57.54 -1.00 -12.61 16 8 O -0.96 -11.13 18.08 -57.54 -1.04 -12.17 16 9 C 0.52 5.92 6.93 -10.99 -0.08 5.84 16 10 O -0.54 -7.61 15.59 5.56 0.09 -7.52 16 11 N -0.60 -6.30 2.76 -173.93 -0.48 -6.78 16 12 C 0.08 0.79 9.32 59.85 0.56 1.35 16 13 C 0.13 1.34 1.87 -67.93 -0.13 1.21 16 14 C -0.12 -1.37 5.12 -26.73 -0.14 -1.50 16 15 C -0.13 -1.98 5.50 -26.73 -0.15 -2.13 16 16 C 0.18 3.09 2.77 -67.93 -0.19 2.90 16 17 N -0.73 -16.88 5.12 -53.42 -0.27 -17.15 16 18 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 22 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.12 -1.77 5.39 -26.76 -0.14 -1.92 16 27 C -0.13 -1.45 5.27 -26.76 -0.14 -1.59 16 28 H 0.07 0.30 5.73 -51.93 -0.30 0.00 16 29 H 0.08 0.53 7.00 -51.93 -0.36 0.16 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.43 3.64 8.05 -34.46 -0.28 3.37 16 32 H 0.13 0.43 6.85 -51.92 -0.36 0.08 16 33 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.64 6.68 -51.93 -0.35 0.30 16 37 H 0.07 0.77 7.40 -51.93 -0.38 0.39 16 38 H 0.09 0.86 4.74 -51.93 -0.25 0.61 16 39 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 40 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 41 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.77 6.90 -51.93 -0.36 0.41 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -36.06 393.61 -9.06 -45.12 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.84 Total: 7.64 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 0.54 Total: -4.50 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.06 Total: -59.77 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.95 Total: -32.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 21.86 SS G_CDS: -0.65 Total: 21.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.06 -9.06 -45.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717448240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.682 kcal (2) G-P(sol) polarization free energy of solvation -36.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds