Wall clock time and date at job start Wed Apr 1 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47210 * 2 1 4 4 N 1.46493 * 109.47340 * 119.99622 * 2 1 3 5 5 S 1.65594 * 120.00450 * 265.00233 * 4 2 1 6 6 C 1.81407 * 104.44951 * 64.99675 * 5 4 2 7 7 O 1.42100 * 104.27876 * 308.92660 * 5 4 2 8 8 O 1.42098 * 104.28249 * 181.06998 * 5 4 2 9 9 C 1.50703 * 109.47278 * 239.99943 * 2 1 3 10 10 O 1.21281 * 119.99626 * 258.30759 * 9 2 1 11 11 N 1.34774 * 120.00069 * 78.30690 * 9 2 1 12 12 C 1.46501 * 120.00271 * 184.45730 * 11 9 2 13 13 C 1.46504 * 119.99765 * 4.46000 * 11 9 2 14 14 C 1.53000 * 109.46691 * 234.39132 * 13 11 9 15 15 C 1.53003 * 109.47244 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46883 * 60.00235 * 15 14 13 17 17 N 1.46504 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.36937 * 119.99624 * 274.99966 * 17 16 15 19 19 H 1.07998 * 119.99855 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99942 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47123 * 90.00038 * 22 20 18 24 24 H 1.48505 * 109.47004 * 210.00223 * 22 20 18 25 25 H 1.48501 * 109.46876 * 329.99786 * 22 20 18 26 26 C 1.53000 * 109.46989 * 299.99921 * 16 15 14 27 27 C 1.53002 * 109.47127 * 114.39555 * 13 11 9 28 28 H 1.08998 * 109.47043 * 296.13262 * 1 2 3 29 29 H 1.09007 * 109.47288 * 56.12930 * 1 2 3 30 30 H 1.09002 * 109.47240 * 176.12796 * 1 2 3 31 31 H 0.97001 * 119.99774 * 84.99787 * 4 2 1 32 32 H 1.08998 * 109.47147 * 300.00244 * 6 5 4 33 33 H 1.08999 * 109.46944 * 60.00090 * 6 5 4 34 34 H 1.09007 * 109.47102 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47143 * 88.89416 * 12 11 9 36 36 H 1.08994 * 109.47116 * 208.89964 * 12 11 9 37 37 H 1.09003 * 109.46667 * 328.89531 * 12 11 9 38 38 H 1.08995 * 109.47365 * 354.39303 * 13 11 9 39 39 H 1.08999 * 109.47822 * 300.00277 * 14 13 11 40 40 H 1.09002 * 109.47208 * 60.00545 * 14 13 11 41 41 H 1.09007 * 109.46713 * 300.00514 * 15 14 13 42 42 H 1.08997 * 109.47706 * 180.02562 * 15 14 13 43 43 H 1.08995 * 109.47204 * 60.00177 * 16 15 14 44 44 H 0.96993 * 120.00234 * 94.99806 * 17 16 15 45 45 H 0.96994 * 120.00349 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.47822 * 300.00062 * 26 16 15 47 47 H 1.09002 * 109.47208 * 179.97438 * 26 16 15 48 48 H 1.08995 * 109.47141 * 299.99426 * 27 13 11 49 49 H 1.08999 * 109.46889 * 60.00027 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 16 2.4121 0.1772 2.5504 6 6 0.8407 0.8990 3.0984 7 8 3.2874 1.1907 2.0751 8 8 2.8606 -0.8027 3.4766 9 6 2.0323 -0.7104 -1.2305 10 8 2.4351 -1.8515 -1.1498 11 7 2.0340 -0.0777 -2.4205 12 6 2.4298 -0.7986 -3.6329 13 6 1.6399 1.3310 -2.5016 14 6 0.5198 1.4886 -3.5318 15 6 0.1086 2.9599 -3.6171 16 6 1.3134 3.8024 -4.0407 17 7 0.9199 5.2113 -4.1218 18 6 0.3444 5.6966 -5.2656 19 1 0.1802 5.0407 -6.1078 20 6 -0.0290 7.0314 -5.3423 21 7 0.1706 7.8306 -4.3158 22 14 -0.8134 7.6936 -6.9030 23 1 -2.2883 7.5433 -6.8179 24 1 -0.4703 9.1301 -7.0583 25 1 -0.3051 6.9339 -8.0733 26 6 2.4335 3.6448 -3.0105 27 6 2.8445 2.1740 -2.9249 28 1 -0.3633 0.4526 0.9226 29 1 -0.3634 0.5728 -0.8533 30 1 -0.3634 -1.0253 -0.0694 31 1 2.1109 -1.6561 1.1949 32 1 0.4386 1.5353 2.3101 33 1 0.1315 0.1011 3.3184 34 1 1.0076 1.4940 3.9964 35 1 1.5547 -1.2756 -4.0740 36 1 2.8608 -0.0978 -4.3478 37 1 3.1686 -1.5587 -3.3787 38 1 1.2865 1.6662 -1.5265 39 1 0.8731 1.1535 -4.5070 40 1 -0.3384 0.8881 -3.2302 41 1 -0.2446 3.2955 -2.6420 42 1 -0.6897 3.0722 -4.3507 43 1 1.6667 3.4668 -5.0157 44 1 1.0670 5.8002 -3.3653 45 1 -0.0906 8.7632 -4.3692 46 1 2.0804 3.9804 -2.0354 47 1 3.2921 4.2446 -3.3125 48 1 3.6425 2.0617 -2.1909 49 1 3.1978 1.8388 -3.9000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717448240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:13 Heat of formation + Delta-G solvation = -127.302218 kcal Electronic energy + Delta-G solvation = -30184.633660 eV Core-core repulsion = 26079.877498 eV Total energy + Delta-G solvation = -4104.756162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55562 -39.50697 -38.21313 -37.05840 -36.85742 -36.58146 -34.89310 -32.46602 -31.65578 -31.23732 -30.30563 -29.12776 -28.06851 -25.64250 -24.55757 -23.48625 -22.68365 -20.91139 -20.53799 -20.30368 -19.13761 -19.02258 -18.00577 -17.50716 -17.21564 -16.91890 -16.60287 -16.44934 -15.89668 -15.63748 -15.33800 -15.14937 -14.87879 -14.65672 -14.52251 -14.35120 -13.93035 -13.92022 -13.70254 -13.42156 -13.26641 -13.23693 -13.16958 -13.13563 -13.03631 -12.93697 -12.84947 -12.75910 -12.63606 -12.25042 -12.20878 -12.03188 -11.96891 -11.93714 -11.54578 -11.51377 -11.15913 -10.90643 -10.79169 -10.52443 -9.66979 -8.92514 -7.88973 -5.15760 -0.72218 1.43225 1.50411 1.50875 1.58947 1.63919 1.99198 2.60277 2.86459 3.19964 3.27540 3.44660 3.65820 3.85497 3.89320 3.93307 4.01116 4.03139 4.15172 4.24680 4.30797 4.40285 4.42798 4.47377 4.57915 4.62104 4.66481 4.71470 4.76623 4.87459 4.91298 4.98328 5.00614 5.04837 5.14679 5.18415 5.26643 5.32638 5.36054 5.49690 5.55668 5.63744 5.74987 5.95031 6.31274 6.34499 7.02794 7.40450 8.19566 8.40753 9.34582 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.002634 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.801368 B =10627.925134 C =11650.091932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 H 0.123 0.877 4 N -1.104 6.104 5 S 2.614 3.386 6 C -0.652 4.652 7 O -0.999 6.999 8 O -0.997 6.997 9 C 0.512 3.488 10 O -0.570 6.570 11 N -0.600 5.600 12 C 0.079 3.921 13 C 0.133 3.867 14 C -0.111 4.111 15 C -0.122 4.122 16 C 0.170 3.830 17 N -0.739 5.739 18 C -0.231 4.231 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.288 1.288 24 H -0.300 1.300 25 H -0.271 1.271 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.424 0.576 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 -18.678 11.708 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.009 3.991 3 H 0.141 0.859 4 N -0.864 5.864 5 S 2.711 3.289 6 C -0.806 4.806 7 O -0.989 6.989 8 O -0.988 6.988 9 C 0.299 3.701 10 O -0.449 6.449 11 N -0.331 5.331 12 C -0.063 4.063 13 C 0.030 3.970 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.062 3.938 17 N -0.378 5.378 18 C -0.363 4.363 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.795 3.205 23 H -0.215 1.215 24 H -0.227 1.227 25 H -0.196 1.196 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.261 0.739 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.204 0.796 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.285 -19.030 11.895 22.444 hybrid contribution -0.724 0.688 -0.840 1.305 sum -1.009 -18.342 11.055 21.440 Atomic orbital electron populations 1.22508 0.90197 1.04918 1.05904 1.20941 0.97531 0.97205 0.83459 0.85917 1.55368 1.84209 1.20709 1.26104 1.04532 0.78117 0.73581 0.72675 1.30457 1.20409 1.15263 1.14514 1.93586 1.64006 1.61408 1.79852 1.93572 1.81435 1.60302 1.63471 1.20920 0.77504 0.86478 0.85223 1.90660 1.48652 1.19739 1.85884 1.47973 1.65756 1.11923 1.07423 1.21730 1.00917 0.97397 0.86271 1.21499 0.94992 0.78728 1.01735 1.21769 0.97786 0.96196 0.99247 1.22013 0.98890 0.94057 1.01289 1.20504 0.92979 0.83692 0.96620 1.42657 1.73023 1.06654 1.15476 1.19585 1.29953 0.93149 0.93611 0.90794 1.25460 1.03943 0.97062 1.00426 1.69799 1.55349 1.05110 1.31831 0.85260 0.78194 0.76991 0.80068 1.21537 1.22678 1.19639 1.21641 0.98128 0.95924 0.99516 1.21795 0.97478 0.93793 1.02643 0.87960 0.89333 0.90734 0.73939 0.82918 0.82376 0.83236 0.91515 0.89538 0.91799 0.87312 0.91161 0.90117 0.92166 0.93565 0.94410 0.79591 0.94239 0.91530 0.92742 0.91194 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.25 71.98 0.67 -0.92 16 2 C 0.12 1.83 2.35 44.25 0.10 1.93 16 3 H 0.12 1.71 5.96 -2.38 -0.01 1.69 16 4 N -1.10 -17.24 5.27 -172.53 -0.91 -18.15 16 5 S 2.61 40.89 6.08 -56.49 -0.34 40.55 16 6 C -0.65 -3.07 9.95 113.37 1.13 -1.94 16 7 O -1.00 -24.05 17.39 -127.65 -2.22 -26.27 16 8 O -1.00 -23.17 18.08 -127.65 -2.31 -25.48 16 9 C 0.51 10.88 6.93 87.66 0.61 11.49 16 10 O -0.57 -15.83 15.59 -3.03 -0.05 -15.88 16 11 N -0.60 -11.22 2.76 -822.60 -2.27 -13.50 16 12 C 0.08 1.36 9.32 127.77 1.19 2.55 16 13 C 0.13 2.41 1.87 44.99 0.08 2.49 16 14 C -0.11 -2.13 5.12 30.60 0.16 -1.98 16 15 C -0.12 -3.40 5.50 30.60 0.17 -3.23 16 16 C 0.17 5.79 2.77 44.99 0.12 5.92 16 17 N -0.74 -34.44 5.12 -322.94 -1.65 -36.09 16 18 C -0.23 -12.13 9.93 84.03 0.83 -11.30 16 19 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 22 Si 0.96 44.75 29.55 68.60 2.03 46.78 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 C -0.11 -3.16 5.39 30.58 0.16 -2.99 16 27 C -0.12 -2.51 5.27 30.58 0.16 -2.35 16 28 H 0.10 0.33 5.73 -2.39 -0.01 0.32 16 29 H 0.09 0.74 7.00 -2.38 -0.02 0.73 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 7.08 8.05 -96.75 -0.78 6.31 16 32 H 0.15 0.23 6.85 -2.39 -0.02 0.22 16 33 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.29 6.68 -2.39 -0.02 1.27 16 37 H 0.06 1.26 7.40 -2.39 -0.02 1.25 16 38 H 0.11 1.65 4.74 -2.39 -0.01 1.64 16 39 H 0.07 1.34 7.50 -2.39 -0.02 1.32 16 40 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 41 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.35 8.08 -2.39 -0.02 1.33 16 44 H 0.37 18.83 7.80 -92.71 -0.72 18.11 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 1.50 6.90 -2.39 -0.02 1.48 16 Total: -1.00 -80.05 393.61 -2.11 -82.16 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.53 Total: 27.25 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.86 Total: -4.11 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -4.55 Total: -124.98 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -4.58 Total: -67.64 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 40.89 SS G_CDS: -0.34 Total: 40.55 kcal Total: -80.05 -2.11 -82.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717448240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.140 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds