Wall clock time and date at job start Wed Apr 1 2020 05:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.69922 * 2 1 4 4 C 1.53187 * 109.58704 * 239.64194 * 2 1 3 5 5 C 1.53046 * 109.31370 * 294.84739 * 4 2 1 6 6 H 1.08997 * 109.45981 * 58.64168 * 5 4 2 7 7 N 1.46500 * 109.45711 * 178.61382 * 5 4 2 8 8 C 1.36935 * 119.99795 * 205.02308 * 7 5 4 9 9 H 1.08006 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99934 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99927 * 12 10 8 16 16 C 1.53046 * 109.52397 * 298.62861 * 5 4 2 17 17 C 1.53189 * 109.31113 * 61.38611 * 16 5 4 18 18 N 1.46927 * 108.76771 * 305.34177 * 17 16 5 19 19 C 1.34778 * 120.62865 * 233.64089 * 18 17 16 20 20 O 1.21283 * 119.99542 * 179.97438 * 19 18 17 21 21 C 1.50692 * 120.00154 * 359.97438 * 19 18 17 22 22 C 1.52997 * 109.47327 * 179.97438 * 21 19 18 23 23 S 1.81395 * 109.47601 * 180.02562 * 22 21 19 24 24 O 1.42102 * 110.54369 * 291.62605 * 23 22 21 25 25 O 1.42097 * 110.54482 * 68.37453 * 23 22 21 26 26 N 1.65598 * 104.45116 * 180.02562 * 23 22 21 27 27 C 1.46507 * 120.00004 * 90.00426 * 26 23 22 28 28 C 1.46494 * 120.00075 * 269.99686 * 26 23 22 29 29 H 1.09000 * 109.46967 * 180.35905 * 1 2 3 30 30 H 1.09005 * 109.47150 * 300.35620 * 1 2 3 31 31 H 1.08994 * 109.47161 * 60.35920 * 1 2 3 32 32 H 1.09000 * 109.49425 * 174.89754 * 4 2 1 33 33 H 1.09002 * 109.52233 * 54.81364 * 4 2 1 34 34 H 0.96997 * 120.00022 * 25.02782 * 7 5 4 35 35 H 0.97004 * 120.00335 * 0.02562 * 11 10 8 36 36 H 1.08997 * 109.49194 * 181.32118 * 16 5 4 37 37 H 1.09003 * 109.49484 * 301.41748 * 16 5 4 38 38 H 1.09000 * 109.58125 * 185.56002 * 17 16 5 39 39 H 1.08997 * 109.60164 * 65.13191 * 17 16 5 40 40 H 1.08999 * 109.47588 * 300.00173 * 21 19 18 41 41 H 1.09001 * 109.47160 * 60.00348 * 21 19 18 42 42 H 1.09001 * 109.47581 * 300.00546 * 22 21 19 43 43 H 1.08998 * 109.47220 * 59.99841 * 22 21 19 44 44 H 1.08991 * 109.47560 * 89.99446 * 27 26 23 45 45 H 1.09000 * 109.46945 * 210.00335 * 27 26 23 46 46 H 1.09001 * 109.46805 * 329.99468 * 27 26 23 47 47 H 1.09001 * 109.47600 * 0.02562 * 28 26 23 48 48 H 1.09004 * 109.47013 * 120.00287 * 28 26 23 49 49 H 1.09001 * 109.47294 * 239.99800 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6415 -2.2042 -1.1700 6 1 0.5566 -2.2816 -1.0990 7 7 2.1024 -2.8978 -2.3753 8 6 1.4648 -4.0337 -2.7976 9 1 0.6219 -4.4180 -2.2423 10 6 1.9018 -4.6913 -3.9392 11 7 2.9293 -4.2233 -4.6156 12 14 1.0316 -6.2404 -4.5157 13 1 -0.0843 -6.5558 -3.5879 14 1 1.9940 -7.3712 -4.5340 15 1 0.4934 -6.0262 -5.8831 16 6 2.2804 -2.8462 0.0637 17 6 1.7692 -2.1409 1.3238 18 7 2.0226 -0.6995 1.1946 19 6 2.6944 -0.0316 2.1533 20 8 2.8975 1.1582 2.0346 21 6 3.1932 -0.7632 3.3726 22 6 3.9172 0.2186 4.2959 23 16 4.5183 -0.6621 5.7634 24 8 3.4292 -1.0823 6.5737 25 8 5.5605 -1.5621 5.4127 26 7 5.2716 0.5043 6.6657 27 6 4.5116 1.2658 7.6602 28 6 6.6980 0.7747 6.4698 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3634 0.5194 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 3.1298 -0.6504 -1.2912 33 1 1.6080 -0.2786 -2.1371 34 1 2.8593 -2.5525 -2.8740 35 1 3.3816 -3.4191 -4.3160 36 1 2.0128 -3.9020 0.1040 37 1 3.3643 -2.7469 0.0052 38 1 2.2945 -2.5274 2.1973 39 1 0.6988 -2.3155 1.4318 40 1 2.3490 -1.2052 3.9019 41 1 3.8829 -1.5502 3.0674 42 1 4.7615 0.6603 3.7665 43 1 3.2280 1.0059 4.6012 44 1 4.5542 0.7529 8.6209 45 1 4.9415 2.2624 7.7609 46 1 3.4735 1.3489 7.3384 47 1 7.0896 0.1157 5.6949 48 1 6.8326 1.8127 6.1657 49 1 7.2330 0.5972 7.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723875204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:32 Heat of formation + Delta-G solvation = -91.081055 kcal Electronic energy + Delta-G solvation = -29483.153857 eV Core-core repulsion = 25379.968362 eV Total energy + Delta-G solvation = -4103.185494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.45170 -37.89462 -37.53926 -36.67135 -36.22960 -34.84396 -33.82496 -32.28496 -31.92317 -29.22874 -28.56556 -27.31107 -25.89299 -24.94287 -23.91729 -23.14452 -21.83381 -20.45253 -19.29427 -18.57916 -18.05510 -17.51824 -17.31954 -16.86328 -16.41258 -16.02879 -15.83807 -14.93470 -14.87524 -14.76602 -14.40715 -14.24042 -13.88772 -13.72086 -13.62885 -13.45752 -13.28553 -13.00655 -12.95399 -12.86069 -12.65012 -12.54834 -12.44522 -12.05480 -11.96442 -11.94302 -11.89143 -11.82060 -11.39894 -11.18903 -10.98383 -10.85599 -10.58065 -10.47104 -10.09278 -9.96619 -9.87005 -9.53774 -9.21041 -8.94869 -8.63712 -7.09037 -6.14175 -3.14927 -0.19679 2.17068 2.47675 2.87225 3.43255 3.48949 3.55421 3.64436 3.74884 3.97405 4.21841 4.37556 4.38004 4.62078 4.81250 4.85388 4.92297 5.00403 5.03375 5.05535 5.10038 5.14037 5.19923 5.30561 5.34113 5.35845 5.37515 5.47436 5.49836 5.55972 5.63403 5.69807 5.78196 5.93816 5.99158 6.04416 6.15708 6.22573 6.32220 6.37033 6.49460 6.76541 6.91298 7.35890 7.76736 8.04377 8.71440 9.17842 10.04328 10.19180 11.34140 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.002251 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.210320 B =12437.537316 C =13116.302648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.135 4.135 5 C 0.184 3.816 6 H 0.053 0.947 7 N -0.736 5.736 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.152 4.152 17 C 0.101 3.899 18 N -0.599 5.599 19 C 0.524 3.476 20 O -0.546 6.546 21 C -0.136 4.136 22 C -0.611 4.611 23 S 2.608 3.392 24 O -0.951 6.951 25 O -0.949 6.949 26 N -1.008 6.008 27 C 0.093 3.907 28 C 0.084 3.916 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 12.887 23.868 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.174 4.174 5 C 0.074 3.926 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.589 5.589 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.193 4.193 17 C -0.022 4.022 18 N -0.332 5.332 19 C 0.311 3.689 20 O -0.424 6.424 21 C -0.177 4.177 22 C -0.740 4.740 23 S 2.701 3.299 24 O -0.941 6.941 25 O -0.939 6.939 26 N -0.847 5.847 27 C -0.052 4.052 28 C -0.061 4.061 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.199 0.801 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.822 11.333 22.981 25.688 hybrid contribution 0.230 1.840 0.669 1.972 sum 2.051 13.173 23.650 27.149 Atomic orbital electron populations 1.22141 0.94842 1.02869 1.02005 1.21202 0.94160 0.97058 0.83738 0.88588 1.22238 1.01240 0.97366 0.96552 1.20131 0.96931 0.88839 0.86703 0.92891 1.42456 1.37788 1.30093 1.27387 1.20075 1.12794 1.03108 1.10274 0.91671 1.25767 0.99420 1.04410 0.94679 1.70816 1.22138 1.24454 1.41508 0.83162 0.74661 0.75079 0.75535 1.22110 1.22015 1.22026 1.22680 1.01173 1.00759 0.94735 1.21946 1.01369 0.79086 0.99802 1.48254 1.54834 1.09727 1.20373 1.20091 0.77814 0.87290 0.83718 1.90667 1.57809 1.15143 1.78773 1.21409 1.02241 0.98443 0.95648 1.30468 1.12345 1.12650 1.18517 1.05212 0.74370 0.74430 0.75902 1.93606 1.55772 1.79494 1.65203 1.93613 1.55485 1.60065 1.84774 1.57335 1.18266 1.57647 1.51403 1.21478 0.95539 0.96361 0.91838 1.21604 0.79412 1.01999 1.03125 0.91573 0.92798 0.91258 0.91974 0.90574 0.80057 0.93288 0.90365 0.92206 0.90364 0.90946 0.87316 0.87153 0.84234 0.84339 0.92136 0.90856 0.90937 0.89438 0.91973 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.02 37.16 0.34 -1.64 16 2 C 0.14 1.97 3.21 -67.60 -0.22 1.75 16 3 H 0.10 1.40 7.01 -51.93 -0.36 1.04 16 4 C -0.13 -2.17 5.02 -26.61 -0.13 -2.31 16 5 C 0.18 3.42 2.52 -67.88 -0.17 3.25 16 6 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 7 N -0.74 -17.69 5.12 -53.38 -0.27 -17.96 16 8 C -0.33 -8.99 9.93 -15.06 -0.15 -9.14 16 9 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 10 C -0.05 -1.28 5.50 -17.43 -0.10 -1.38 16 11 N -0.94 -28.84 13.70 55.49 0.76 -28.08 16 12 Si 1.08 25.61 29.92 -169.99 -5.09 20.53 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 17 C 0.10 1.25 5.93 -3.71 -0.02 1.23 16 18 N -0.60 -7.93 2.68 -165.22 -0.44 -8.38 16 19 C 0.52 6.92 7.70 -10.99 -0.08 6.83 16 20 O -0.55 -8.65 15.40 5.55 0.09 -8.56 16 21 C -0.14 -1.33 4.05 -27.89 -0.11 -1.45 16 22 C -0.61 -5.05 5.47 37.16 0.20 -4.85 16 23 S 2.61 23.57 5.37 -107.50 -0.58 22.99 16 24 O -0.95 -11.04 17.09 -57.54 -0.98 -12.02 16 25 O -0.95 -11.37 16.57 -57.54 -0.95 -12.33 16 26 N -1.01 -7.02 3.52 -129.20 -0.45 -7.48 16 27 C 0.09 0.49 10.24 59.85 0.61 1.10 16 28 C 0.08 0.46 10.62 59.84 0.64 1.10 16 29 H 0.07 0.84 5.72 -51.93 -0.30 0.54 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.37 9.25 6.63 -40.82 -0.27 8.98 16 35 H 0.26 7.70 6.78 -40.82 -0.28 7.42 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 39 H 0.07 0.82 7.48 -51.93 -0.39 0.44 16 40 H 0.11 0.85 7.94 -51.93 -0.41 0.43 16 41 H 0.11 0.96 7.69 -51.93 -0.40 0.56 16 42 H 0.14 1.09 8.10 -51.92 -0.42 0.67 16 43 H 0.14 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 46 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 47 H 0.09 0.53 6.87 -51.93 -0.36 0.17 16 48 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -36.95 397.19 -9.37 -46.32 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.08 Total: 7.10 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 0.65 Total: -8.12 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.41 Total: -61.89 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.85 Total: -32.91 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.09 Total: 20.53 kcal Atomic # 16 Polarization: 23.57 SS G_CDS: -0.58 Total: 22.99 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.95 -9.37 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723875204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -36.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds