Wall clock time and date at job start Wed Apr 1 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.69922 * 2 1 4 4 C 1.53187 * 109.58704 * 239.64194 * 2 1 3 5 5 C 1.53046 * 109.31370 * 294.84739 * 4 2 1 6 6 H 1.08997 * 109.45981 * 58.64168 * 5 4 2 7 7 N 1.46500 * 109.45711 * 178.61382 * 5 4 2 8 8 C 1.36935 * 119.99795 * 205.02308 * 7 5 4 9 9 H 1.08006 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00104 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00116 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 239.99934 * 12 10 8 15 15 H 1.48500 * 109.47454 * 119.99927 * 12 10 8 16 16 C 1.53046 * 109.52397 * 298.62861 * 5 4 2 17 17 C 1.53189 * 109.31113 * 61.38611 * 16 5 4 18 18 N 1.46927 * 108.76771 * 305.34177 * 17 16 5 19 19 C 1.34778 * 120.62865 * 233.64089 * 18 17 16 20 20 O 1.21283 * 119.99542 * 179.97438 * 19 18 17 21 21 C 1.50692 * 120.00154 * 359.97438 * 19 18 17 22 22 C 1.52997 * 109.47327 * 179.97438 * 21 19 18 23 23 S 1.81395 * 109.47601 * 180.02562 * 22 21 19 24 24 O 1.42102 * 110.54369 * 291.62605 * 23 22 21 25 25 O 1.42097 * 110.54482 * 68.37453 * 23 22 21 26 26 N 1.65598 * 104.45116 * 180.02562 * 23 22 21 27 27 C 1.46507 * 120.00004 * 90.00426 * 26 23 22 28 28 C 1.46494 * 120.00075 * 269.99686 * 26 23 22 29 29 H 1.09000 * 109.46967 * 180.35905 * 1 2 3 30 30 H 1.09005 * 109.47150 * 300.35620 * 1 2 3 31 31 H 1.08994 * 109.47161 * 60.35920 * 1 2 3 32 32 H 1.09000 * 109.49425 * 174.89754 * 4 2 1 33 33 H 1.09002 * 109.52233 * 54.81364 * 4 2 1 34 34 H 0.96997 * 120.00022 * 25.02782 * 7 5 4 35 35 H 0.97004 * 120.00335 * 0.02562 * 11 10 8 36 36 H 1.08997 * 109.49194 * 181.32118 * 16 5 4 37 37 H 1.09003 * 109.49484 * 301.41748 * 16 5 4 38 38 H 1.09000 * 109.58125 * 185.56002 * 17 16 5 39 39 H 1.08997 * 109.60164 * 65.13191 * 17 16 5 40 40 H 1.08999 * 109.47588 * 300.00173 * 21 19 18 41 41 H 1.09001 * 109.47160 * 60.00348 * 21 19 18 42 42 H 1.09001 * 109.47581 * 300.00546 * 22 21 19 43 43 H 1.08998 * 109.47220 * 59.99841 * 22 21 19 44 44 H 1.08991 * 109.47560 * 89.99446 * 27 26 23 45 45 H 1.09000 * 109.46945 * 210.00335 * 27 26 23 46 46 H 1.09001 * 109.46805 * 329.99468 * 27 26 23 47 47 H 1.09001 * 109.47600 * 0.02562 * 28 26 23 48 48 H 1.09004 * 109.47013 * 120.00287 * 28 26 23 49 49 H 1.09001 * 109.47294 * 239.99800 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 1.6415 -2.2042 -1.1700 6 1 0.5566 -2.2816 -1.0990 7 7 2.1024 -2.8978 -2.3753 8 6 1.4648 -4.0337 -2.7976 9 1 0.6219 -4.4180 -2.2423 10 6 1.9018 -4.6913 -3.9392 11 7 2.9293 -4.2233 -4.6156 12 14 1.0316 -6.2404 -4.5157 13 1 -0.0843 -6.5558 -3.5879 14 1 1.9940 -7.3712 -4.5340 15 1 0.4934 -6.0262 -5.8831 16 6 2.2804 -2.8462 0.0637 17 6 1.7692 -2.1409 1.3238 18 7 2.0226 -0.6995 1.1946 19 6 2.6944 -0.0316 2.1533 20 8 2.8975 1.1582 2.0346 21 6 3.1932 -0.7632 3.3726 22 6 3.9172 0.2186 4.2959 23 16 4.5183 -0.6621 5.7634 24 8 3.4292 -1.0823 6.5737 25 8 5.5605 -1.5621 5.4127 26 7 5.2716 0.5043 6.6657 27 6 4.5116 1.2658 7.6602 28 6 6.6980 0.7747 6.4698 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3634 0.5194 0.8868 31 1 -0.3633 0.5082 -0.8931 32 1 3.1298 -0.6504 -1.2912 33 1 1.6080 -0.2786 -2.1371 34 1 2.8593 -2.5525 -2.8740 35 1 3.3816 -3.4191 -4.3160 36 1 2.0128 -3.9020 0.1040 37 1 3.3643 -2.7469 0.0052 38 1 2.2945 -2.5274 2.1973 39 1 0.6988 -2.3155 1.4318 40 1 2.3490 -1.2052 3.9019 41 1 3.8829 -1.5502 3.0674 42 1 4.7615 0.6603 3.7665 43 1 3.2280 1.0059 4.6012 44 1 4.5542 0.7529 8.6209 45 1 4.9415 2.2624 7.7609 46 1 3.4735 1.3489 7.3384 47 1 7.0896 0.1157 5.6949 48 1 6.8326 1.8127 6.1657 49 1 7.2330 0.5972 7.4027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723875204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:31 Heat of formation + Delta-G solvation = -118.392694 kcal Electronic energy + Delta-G solvation = -29484.338178 eV Core-core repulsion = 25379.968362 eV Total energy + Delta-G solvation = -4104.369816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55372 -39.15139 -38.33526 -37.27171 -36.91558 -36.54727 -34.74594 -33.83149 -33.10315 -30.86245 -28.96652 -28.61875 -26.70312 -25.76284 -25.40020 -24.56555 -23.15216 -21.61482 -19.97848 -19.75126 -19.22937 -18.93576 -18.35540 -17.56673 -17.31839 -16.97299 -16.73374 -16.39089 -16.12242 -15.60003 -15.50203 -15.40638 -15.13836 -15.04257 -14.73995 -14.55610 -14.20813 -14.02398 -13.77608 -13.51831 -13.48964 -13.39100 -13.27532 -13.23650 -13.01929 -12.75402 -12.63199 -12.63098 -12.59379 -12.53143 -12.36248 -12.13931 -12.03414 -11.93688 -11.84868 -11.51226 -11.07153 -10.99630 -10.83953 -10.03140 -9.76639 -9.11585 -8.36970 -5.31401 -0.88595 1.46553 1.55707 1.59128 1.70202 1.81202 1.87549 2.71809 2.73485 3.07545 3.23272 3.40665 3.41966 3.62120 3.72549 3.77437 3.83354 3.93475 4.00426 4.15086 4.20493 4.29143 4.37946 4.45175 4.48129 4.50037 4.55965 4.58669 4.69014 4.71752 4.74362 4.77658 4.94075 4.96024 4.96720 4.98076 4.98215 5.04538 5.18598 5.25080 5.44920 5.53244 5.54865 5.63018 6.31679 6.50570 7.00979 7.10377 8.00265 8.13165 9.14923 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.002251 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.210320 B =12437.537316 C =13116.302648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.179 3.821 6 H 0.054 0.946 7 N -0.751 5.751 8 C -0.320 4.320 9 H 0.070 0.930 10 C -0.109 4.109 11 N -0.980 5.980 12 Si 1.130 2.870 13 H -0.268 1.268 14 H -0.294 1.294 15 H -0.294 1.294 16 C -0.144 4.144 17 C 0.107 3.893 18 N -0.602 5.602 19 C 0.523 3.477 20 O -0.574 6.574 21 C -0.146 4.146 22 C -0.601 4.601 23 S 2.625 3.375 24 O -0.978 6.978 25 O -0.983 6.983 26 N -1.008 6.008 27 C 0.083 3.917 28 C 0.075 3.925 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.356 0.644 35 H 0.243 0.757 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 13.367 26.027 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.164 4.164 5 C 0.071 3.929 6 H 0.071 0.929 7 N -0.392 5.392 8 C -0.452 4.452 9 H 0.088 0.912 10 C -0.300 4.300 11 N -0.629 5.629 12 Si 0.956 3.044 13 H -0.193 1.193 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.185 4.185 17 C -0.016 4.016 18 N -0.334 5.334 19 C 0.311 3.689 20 O -0.455 6.455 21 C -0.186 4.186 22 C -0.731 4.731 23 S 2.720 3.280 24 O -0.968 6.968 25 O -0.973 6.973 26 N -0.848 5.848 27 C -0.062 4.062 28 C -0.069 4.069 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.187 0.813 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.717 11.826 25.215 27.859 hybrid contribution 0.584 1.810 0.060 1.903 sum 1.301 13.636 25.275 28.748 Atomic orbital electron populations 1.22083 0.93240 1.02949 1.02915 1.21079 0.95311 0.96349 0.82992 0.89133 1.22097 1.00378 0.96002 0.97880 1.20382 0.96946 0.89925 0.85678 0.92853 1.42711 1.37445 1.29885 1.29153 1.20402 1.12067 1.03255 1.09458 0.91161 1.27139 0.99886 1.07344 0.95638 1.70933 1.24067 1.24955 1.42926 0.82576 0.74439 0.71876 0.75542 1.19272 1.22144 1.22137 1.22473 1.00182 1.00292 0.95575 1.21990 1.02798 0.78137 0.98665 1.48307 1.54888 1.10010 1.20195 1.20619 0.76934 0.87084 0.84286 1.90656 1.58729 1.16552 1.79524 1.21592 1.03611 0.98838 0.94603 1.30392 1.12677 1.12496 1.17567 1.04497 0.73427 0.74348 0.75770 1.93565 1.56697 1.80465 1.66096 1.93569 1.56496 1.61908 1.85325 1.57179 1.18865 1.57426 1.51338 1.21712 0.95954 0.97313 0.91239 1.21792 0.78548 1.03153 1.03451 0.91802 0.91543 0.90769 0.93292 0.91183 0.81281 0.94632 0.91556 0.93538 0.87135 0.89103 0.84827 0.85994 0.83757 0.83106 0.92325 0.88501 0.90397 0.90271 0.89815 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.02 71.98 0.65 -2.82 16 2 C 0.15 3.88 3.21 44.97 0.14 4.03 16 3 H 0.09 2.56 7.01 -2.38 -0.02 2.54 16 4 C -0.12 -4.00 5.02 30.67 0.15 -3.85 16 5 C 0.18 6.58 2.52 45.02 0.11 6.69 16 6 H 0.05 1.97 6.44 -2.39 -0.02 1.96 16 7 N -0.75 -36.65 5.12 -322.80 -1.65 -38.30 16 8 C -0.32 -17.39 9.93 84.03 0.83 -16.56 16 9 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 10 C -0.11 -6.26 5.50 84.86 0.47 -5.80 16 11 N -0.98 -61.33 13.70 21.65 0.30 -61.03 16 12 Si 1.13 51.52 29.92 68.60 2.05 53.57 16 13 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 C -0.14 -4.55 5.66 30.67 0.17 -4.38 16 17 C 0.11 2.35 5.93 86.36 0.51 2.86 16 18 N -0.60 -14.67 2.68 -795.03 -2.13 -16.80 16 19 C 0.52 12.63 7.70 87.65 0.67 13.30 16 20 O -0.57 -17.24 15.40 -3.04 -0.05 -17.29 16 21 C -0.15 -2.46 4.05 29.84 0.12 -2.34 16 22 C -0.60 -8.61 5.47 71.98 0.39 -8.22 16 23 S 2.63 43.54 5.37 -56.49 -0.30 43.24 16 24 O -0.98 -21.29 17.09 -127.65 -2.18 -23.47 16 25 O -0.98 -22.72 16.57 -127.65 -2.12 -24.84 16 26 N -1.01 -12.27 3.52 -562.69 -1.98 -14.25 16 27 C 0.08 0.70 10.24 127.77 1.31 2.00 16 28 C 0.08 0.70 10.62 127.77 1.36 2.06 16 29 H 0.06 1.47 5.72 -2.39 -0.01 1.46 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.36 18.61 6.63 -92.71 -0.61 18.00 16 35 H 0.24 15.22 6.78 -92.70 -0.63 14.59 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.78 5.93 -2.39 -0.01 1.76 16 39 H 0.09 1.74 7.48 -2.39 -0.02 1.72 16 40 H 0.13 1.60 7.94 -2.39 -0.02 1.58 16 41 H 0.12 1.80 7.69 -2.39 -0.02 1.78 16 42 H 0.14 1.97 8.10 -2.39 -0.02 1.95 16 43 H 0.15 1.81 8.10 -2.39 -0.02 1.79 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.10 0.36 8.07 -2.39 -0.02 0.34 16 46 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 47 H 0.08 0.88 6.87 -2.39 -0.02 0.86 16 48 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -80.36 397.19 -0.68 -81.05 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.47 Total: 31.14 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 6.90 Total: -13.01 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -5.46 Total: -130.38 kcal Atomic # 8 Polarization: -61.26 SS G_CDS: -4.34 Total: -65.60 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Atomic # 16 Polarization: 43.54 SS G_CDS: -0.30 Total: 43.24 kcal Total: -80.36 -0.68 -81.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723875204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.345 kcal (2) G-P(sol) polarization free energy of solvation -80.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds