Wall clock time and date at job start Wed Apr 1 2020 05:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 N 1.46504 * 109.46978 * 119.99717 * 2 1 3 5 5 C 1.34776 * 119.99734 * 274.99863 * 4 2 1 6 6 O 1.21273 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99505 * 179.97438 * 5 4 2 8 8 N 1.46505 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.46494 * 120.00303 * 85.00169 * 8 7 5 10 10 S 1.65598 * 119.99852 * 265.00148 * 8 7 5 11 11 C 1.81401 * 104.45112 * 89.99818 * 10 8 7 12 12 O 1.42099 * 104.27865 * 206.06873 * 10 8 7 13 13 O 1.42107 * 104.27977 * 333.92789 * 10 8 7 14 14 C 1.53001 * 109.46860 * 239.99476 * 2 1 3 15 15 C 1.53042 * 109.45578 * 180.02562 * 14 2 1 16 16 C 1.53200 * 109.30831 * 178.60246 * 15 14 2 17 17 N 1.46926 * 108.76440 * 54.65919 * 16 15 14 18 18 C 1.36931 * 120.62969 * 126.40373 * 17 16 15 19 19 H 1.08001 * 120.00582 * 331.81900 * 18 17 16 20 20 C 1.38818 * 119.99874 * 151.81732 * 18 17 16 21 21 N 1.31619 * 119.99776 * 343.08220 * 20 18 17 22 22 Si 1.86794 * 120.00037 * 163.07840 * 20 18 17 23 23 H 1.48502 * 109.47259 * 60.00382 * 22 20 18 24 24 H 1.48498 * 109.47453 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47231 * 300.00358 * 22 20 18 26 26 C 1.46923 * 118.73435 * 306.37745 * 17 16 15 27 27 C 1.53035 * 109.45649 * 59.97726 * 14 2 1 28 28 H 1.08998 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46998 * 60.00172 * 1 2 3 30 30 H 1.09002 * 109.46996 * 300.00391 * 1 2 3 31 31 H 0.97002 * 120.00073 * 94.99610 * 4 2 1 32 32 H 1.08994 * 109.47475 * 299.99973 * 7 5 4 33 33 H 1.08997 * 109.47316 * 60.00421 * 7 5 4 34 34 H 1.08996 * 109.47487 * 89.99846 * 9 8 7 35 35 H 1.08996 * 109.47356 * 210.00180 * 9 8 7 36 36 H 1.09006 * 109.46706 * 330.00071 * 9 8 7 37 37 H 1.08998 * 109.47051 * 59.99845 * 11 10 8 38 38 H 1.08994 * 109.47222 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47080 * 300.00243 * 11 10 8 40 40 H 1.08995 * 109.46142 * 299.99760 * 14 2 1 41 41 H 1.08996 * 109.49905 * 298.56529 * 15 14 2 42 42 H 1.08995 * 109.49944 * 58.66706 * 15 14 2 43 43 H 1.09000 * 109.59645 * 294.86408 * 16 15 14 44 44 H 1.09001 * 109.69792 * 174.50418 * 16 15 14 45 45 H 0.97000 * 119.99690 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.59321 * 293.82652 * 26 17 16 47 47 H 1.09003 * 109.70249 * 173.47003 * 26 17 16 48 48 H 1.09002 * 109.50052 * 301.32963 * 27 14 2 49 49 H 1.08999 * 109.50535 * 61.40186 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1585 2.4116 7 6 2.6489 -0.7287 3.5878 8 7 2.6977 0.2127 4.7093 9 6 1.4972 0.4585 5.5121 10 16 4.1100 0.9987 5.0696 11 6 4.0425 2.5232 4.0887 12 8 4.0037 1.2927 6.4558 13 8 5.1266 0.1352 4.5796 14 6 2.0400 -0.7214 -1.2492 15 6 3.5704 -0.7218 -1.2486 16 6 4.0773 -1.4751 -2.4825 17 7 3.4748 -0.8772 -3.6818 18 6 4.2607 -0.4518 -4.7193 19 1 5.2718 -0.1223 -4.5311 20 6 3.7578 -0.4441 -6.0132 21 7 2.6778 -1.1382 -6.3035 22 14 4.6136 0.5513 -7.3420 23 1 6.0084 0.0673 -7.5022 24 1 3.8841 0.3938 -8.6258 25 1 4.6286 1.9848 -6.9544 26 6 2.0129 -0.7450 -3.7468 27 6 1.5292 -0.0001 -2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6318 1.1528 32 1 1.9760 -1.5504 3.8326 33 1 3.6480 -1.1212 3.3987 34 1 1.4648 -0.2466 6.3427 35 1 1.5221 1.4766 5.9006 36 1 0.6114 0.3285 4.8903 37 1 3.1676 3.1043 4.3801 38 1 4.9436 3.1099 4.2666 39 1 3.9754 2.2715 3.0303 40 1 1.6766 -1.7490 -1.2489 41 1 3.9345 0.3053 -1.2741 42 1 3.9338 -1.2148 -0.3470 43 1 3.7904 -2.5244 -2.4137 44 1 5.1629 -1.3961 -2.5410 45 1 2.3262 -1.1326 -7.2075 46 1 1.5576 -1.7347 -3.7811 47 1 1.7340 -0.1834 -4.6384 48 1 0.4395 0.0205 -2.4868 49 1 1.9123 1.0202 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725763348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:00 Heat of formation + Delta-G solvation = -84.348067 kcal Electronic energy + Delta-G solvation = -29933.915863 eV Core-core repulsion = 25831.022333 eV Total energy + Delta-G solvation = -4102.893530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.17703 -38.15975 -37.44897 -36.40608 -36.08276 -35.25135 -32.97104 -31.50440 -29.87103 -29.63650 -29.46167 -28.50491 -25.72269 -25.26908 -23.10166 -22.07045 -20.98877 -20.52537 -19.31322 -19.08388 -18.10201 -17.58806 -16.80846 -16.73291 -16.34876 -15.94570 -15.30229 -14.90015 -14.70287 -14.40944 -14.06559 -13.78624 -13.61986 -13.55056 -13.38889 -13.33930 -13.27915 -13.03746 -12.95705 -12.67339 -12.39248 -12.38647 -12.28970 -11.94774 -11.89510 -11.82320 -11.41162 -11.33133 -11.17185 -11.00640 -10.71998 -10.48685 -10.42708 -10.24413 -10.20353 -9.93223 -9.59102 -9.54553 -9.24895 -9.05405 -8.47931 -6.68026 -5.80472 -3.22684 -0.03438 2.16159 2.41730 3.07257 3.37330 3.43040 3.44571 3.55370 3.84142 4.20340 4.48605 4.53495 4.64178 4.73794 4.89525 4.91488 4.96570 5.15591 5.22165 5.29169 5.35879 5.42169 5.47669 5.50781 5.59573 5.62415 5.67735 5.80368 5.90131 5.97873 6.03960 6.12160 6.20044 6.30048 6.40826 6.47139 6.58517 6.67729 6.74236 6.81817 6.96684 7.32924 7.40510 7.63531 7.78154 8.04824 8.44152 9.20476 9.83915 10.40535 11.28031 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.002365 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.670063 B =11838.152142 C =12536.524611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.086 0.914 4 N -0.716 5.716 5 C 0.487 3.513 6 O -0.539 6.539 7 C 0.094 3.906 8 N -0.983 5.983 9 C 0.100 3.900 10 S 2.611 3.389 11 C -0.660 4.660 12 O -0.956 6.956 13 O -0.956 6.956 14 C -0.084 4.084 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.134 4.134 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.401 0.599 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 1.532 22.415 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.104 0.896 4 N -0.367 5.367 5 C 0.271 3.729 6 O -0.416 6.416 7 C -0.036 4.036 8 N -0.819 5.819 9 C -0.045 4.045 10 S 2.704 3.296 11 C -0.811 4.811 12 O -0.947 6.947 13 O -0.947 6.947 14 C -0.103 4.103 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.236 0.764 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.072 0.928 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.014 2.050 22.879 23.319 hybrid contribution 0.030 0.499 -1.375 1.463 sum -3.984 2.550 21.504 22.018 Atomic orbital electron populations 1.22186 0.95491 1.01933 1.02288 1.21197 0.93719 0.97560 0.83552 0.89637 1.46167 1.66520 1.14268 1.09744 1.21332 0.78329 0.88091 0.85178 1.90680 1.50079 1.15809 1.85031 1.21315 1.05675 0.92407 0.84190 1.57092 1.28098 1.56343 1.40369 1.21443 0.86879 1.01709 0.94477 1.04928 0.72883 0.76648 0.75129 1.30444 1.10944 1.22365 1.17328 1.93605 1.85618 1.85933 1.29528 1.93601 1.55789 1.62908 1.82390 1.21343 0.96469 0.99318 0.93217 1.22053 0.94450 1.01372 0.98716 1.20890 0.96593 0.93892 0.86730 1.44037 1.02020 1.69876 1.15553 1.19144 0.97257 1.36222 0.85612 0.91823 1.25035 0.98426 0.99112 0.97049 1.70017 1.24580 1.40851 1.19368 0.86378 0.78953 0.80395 0.81097 1.20893 1.21640 1.21052 1.20756 0.83308 0.96787 0.94547 1.22267 0.98806 1.00062 0.96187 0.92648 0.91011 0.92834 0.76427 0.86803 0.85654 0.92118 0.90998 0.90919 0.85278 0.85877 0.84788 0.91414 0.92403 0.93252 0.96634 0.92923 0.93602 0.96520 0.89499 0.92841 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.13 37.16 0.34 -1.48 16 2 C 0.14 1.76 2.16 -67.92 -0.15 1.61 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 N -0.72 -6.95 4.36 -53.80 -0.23 -7.18 16 5 C 0.49 4.86 7.86 -10.99 -0.09 4.78 16 6 O -0.54 -6.86 14.68 5.56 0.08 -6.78 16 7 C 0.09 0.69 6.12 -5.19 -0.03 0.66 16 8 N -0.98 -8.04 2.61 -123.06 -0.32 -8.36 16 9 C 0.10 0.67 10.20 59.84 0.61 1.28 16 10 S 2.61 24.68 6.02 -107.50 -0.65 24.03 16 11 C -0.66 -5.32 10.52 101.05 1.06 -4.26 16 12 O -0.96 -11.30 17.09 -57.54 -0.98 -12.29 16 13 O -0.96 -11.63 16.53 -57.54 -0.95 -12.58 16 14 C -0.08 -1.22 1.79 -90.58 -0.16 -1.38 16 15 C -0.13 -2.00 5.22 -26.61 -0.14 -2.14 16 16 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 17 N -0.59 -14.36 2.99 -172.31 -0.52 -14.87 16 18 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 19 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -25.81 11.19 55.49 0.62 -25.19 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 27 C -0.13 -2.33 5.04 -26.61 -0.13 -2.47 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.84 6.40 -51.93 -0.33 0.51 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 2.99 8.39 -40.82 -0.34 2.65 16 32 H 0.11 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.13 0.87 6.82 -51.93 -0.35 0.52 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 36 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 37 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.13 1.25 7.22 -51.92 -0.37 0.87 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.65 7.41 -51.93 -0.38 0.26 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.25 6.07 -51.93 -0.31 1.93 16 48 H 0.05 0.83 6.36 -51.93 -0.33 0.50 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -34.77 396.48 -9.22 -43.99 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.26 Total: 0.43 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 1.04 Total: -3.66 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.45 Total: -55.60 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.85 Total: -31.65 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 24.68 SS G_CDS: -0.65 Total: 24.03 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.77 -9.22 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725763348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.353 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds