Wall clock time and date at job start Wed Apr 1 2020 05:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47219 * 2 1 4 4 N 1.46504 * 109.46978 * 119.99717 * 2 1 3 5 5 C 1.34776 * 119.99734 * 274.99863 * 4 2 1 6 6 O 1.21273 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99505 * 179.97438 * 5 4 2 8 8 N 1.46505 * 109.46978 * 180.02562 * 7 5 4 9 9 C 1.46494 * 120.00303 * 85.00169 * 8 7 5 10 10 S 1.65598 * 119.99852 * 265.00148 * 8 7 5 11 11 C 1.81401 * 104.45112 * 89.99818 * 10 8 7 12 12 O 1.42099 * 104.27865 * 206.06873 * 10 8 7 13 13 O 1.42107 * 104.27977 * 333.92789 * 10 8 7 14 14 C 1.53001 * 109.46860 * 239.99476 * 2 1 3 15 15 C 1.53042 * 109.45578 * 180.02562 * 14 2 1 16 16 C 1.53200 * 109.30831 * 178.60246 * 15 14 2 17 17 N 1.46926 * 108.76440 * 54.65919 * 16 15 14 18 18 C 1.36931 * 120.62969 * 126.40373 * 17 16 15 19 19 H 1.08001 * 120.00582 * 331.81900 * 18 17 16 20 20 C 1.38818 * 119.99874 * 151.81732 * 18 17 16 21 21 N 1.31619 * 119.99776 * 343.08220 * 20 18 17 22 22 Si 1.86794 * 120.00037 * 163.07840 * 20 18 17 23 23 H 1.48502 * 109.47259 * 60.00382 * 22 20 18 24 24 H 1.48498 * 109.47453 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47231 * 300.00358 * 22 20 18 26 26 C 1.46923 * 118.73435 * 306.37745 * 17 16 15 27 27 C 1.53035 * 109.45649 * 59.97726 * 14 2 1 28 28 H 1.08998 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46998 * 60.00172 * 1 2 3 30 30 H 1.09002 * 109.46996 * 300.00391 * 1 2 3 31 31 H 0.97002 * 120.00073 * 94.99610 * 4 2 1 32 32 H 1.08994 * 109.47475 * 299.99973 * 7 5 4 33 33 H 1.08997 * 109.47316 * 60.00421 * 7 5 4 34 34 H 1.08996 * 109.47487 * 89.99846 * 9 8 7 35 35 H 1.08996 * 109.47356 * 210.00180 * 9 8 7 36 36 H 1.09006 * 109.46706 * 330.00071 * 9 8 7 37 37 H 1.08998 * 109.47051 * 59.99845 * 11 10 8 38 38 H 1.08994 * 109.47222 * 179.97438 * 11 10 8 39 39 H 1.09000 * 109.47080 * 300.00243 * 11 10 8 40 40 H 1.08995 * 109.46142 * 299.99760 * 14 2 1 41 41 H 1.08996 * 109.49905 * 298.56529 * 15 14 2 42 42 H 1.08995 * 109.49944 * 58.66706 * 15 14 2 43 43 H 1.09000 * 109.59645 * 294.86408 * 16 15 14 44 44 H 1.09001 * 109.69792 * 174.50418 * 16 15 14 45 45 H 0.97000 * 119.99690 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.59321 * 293.82652 * 26 17 16 47 47 H 1.09003 * 109.70249 * 173.47003 * 26 17 16 48 48 H 1.09002 * 109.50052 * 301.32963 * 27 14 2 49 49 H 1.08999 * 109.50535 * 61.40186 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1585 2.4116 7 6 2.6489 -0.7287 3.5878 8 7 2.6977 0.2127 4.7093 9 6 1.4972 0.4585 5.5121 10 16 4.1100 0.9987 5.0696 11 6 4.0425 2.5232 4.0887 12 8 4.0037 1.2927 6.4558 13 8 5.1266 0.1352 4.5796 14 6 2.0400 -0.7214 -1.2492 15 6 3.5704 -0.7218 -1.2486 16 6 4.0773 -1.4751 -2.4825 17 7 3.4748 -0.8772 -3.6818 18 6 4.2607 -0.4518 -4.7193 19 1 5.2718 -0.1223 -4.5311 20 6 3.7578 -0.4441 -6.0132 21 7 2.6778 -1.1382 -6.3035 22 14 4.6136 0.5513 -7.3420 23 1 6.0084 0.0673 -7.5022 24 1 3.8841 0.3938 -8.6258 25 1 4.6286 1.9848 -6.9544 26 6 2.0129 -0.7450 -3.7468 27 6 1.5292 -0.0001 -2.4985 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6318 1.1528 32 1 1.9760 -1.5504 3.8326 33 1 3.6480 -1.1212 3.3987 34 1 1.4648 -0.2466 6.3427 35 1 1.5221 1.4766 5.9006 36 1 0.6114 0.3285 4.8903 37 1 3.1676 3.1043 4.3801 38 1 4.9436 3.1099 4.2666 39 1 3.9754 2.2715 3.0303 40 1 1.6766 -1.7490 -1.2489 41 1 3.9345 0.3053 -1.2741 42 1 3.9338 -1.2148 -0.3470 43 1 3.7904 -2.5244 -2.4137 44 1 5.1629 -1.3961 -2.5410 45 1 2.3262 -1.1326 -7.2075 46 1 1.5576 -1.7347 -3.7811 47 1 1.7340 -0.1834 -4.6384 48 1 0.4395 0.0205 -2.4868 49 1 1.9123 1.0202 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725763348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:59 Heat of formation + Delta-G solvation = -109.893450 kcal Electronic energy + Delta-G solvation = -29935.023594 eV Core-core repulsion = 25831.022333 eV Total energy + Delta-G solvation = -4104.001261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04657 -39.45903 -38.27358 -37.24338 -37.00856 -36.33119 -34.47405 -32.93092 -31.41391 -30.78165 -30.28914 -29.24559 -27.14591 -26.20255 -24.51936 -23.63524 -22.17726 -21.45593 -20.70379 -19.90911 -18.82842 -18.75760 -18.19622 -17.53174 -17.14690 -16.97187 -16.66893 -16.08922 -15.79048 -15.39052 -15.30369 -15.11597 -14.87467 -14.77557 -14.33686 -14.26637 -14.08605 -14.01801 -13.92031 -13.71889 -13.54164 -13.38209 -13.30495 -13.23240 -12.89676 -12.73056 -12.62845 -12.59087 -12.48549 -12.32747 -12.15569 -12.06035 -12.01533 -11.77231 -11.44742 -11.28928 -11.05203 -11.04079 -10.52185 -9.96772 -9.94307 -8.64717 -7.86769 -5.31255 -0.74300 1.45852 1.48031 1.50038 1.54602 1.67158 2.29095 2.51423 2.84464 3.12021 3.27278 3.64556 3.72291 3.75225 3.90496 4.00586 4.06825 4.10765 4.12926 4.37024 4.47145 4.49218 4.53110 4.59750 4.63870 4.76245 4.77901 4.85828 4.89752 4.94131 4.99966 5.02580 5.04510 5.07776 5.17506 5.23575 5.33515 5.40300 5.42953 5.48901 5.56006 5.62230 5.67488 5.83034 6.40897 6.65373 7.17216 7.31203 7.90043 8.39963 9.18863 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.002365 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.670063 B =11838.152142 C =12536.524611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.065 0.935 4 N -0.709 5.709 5 C 0.486 3.514 6 O -0.567 6.567 7 C 0.095 3.905 8 N -0.985 5.985 9 C 0.093 3.907 10 S 2.624 3.376 11 C -0.654 4.654 12 O -0.983 6.983 13 O -0.986 6.986 14 C -0.074 4.074 15 C -0.114 4.114 16 C 0.140 3.860 17 N -0.612 5.612 18 C -0.264 4.264 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.177 3.823 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.415 0.585 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.019 0.981 44 H 0.046 0.954 45 H 0.250 0.750 46 H 0.000 1.000 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 1.311 24.231 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.083 0.917 4 N -0.362 5.362 5 C 0.272 3.728 6 O -0.446 6.446 7 C -0.034 4.034 8 N -0.821 5.821 9 C -0.051 4.051 10 S 2.719 3.281 11 C -0.806 4.806 12 O -0.974 6.974 13 O -0.976 6.976 14 C -0.093 4.093 15 C -0.153 4.153 16 C 0.015 3.985 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.791 3.209 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.051 3.949 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.252 0.748 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.018 0.982 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.340 1.795 24.742 25.184 hybrid contribution 0.139 0.562 -1.927 2.012 sum -4.201 2.357 22.815 23.317 Atomic orbital electron populations 1.22121 0.94464 1.02745 1.01975 1.20810 0.94342 0.96239 0.83418 0.91704 1.46020 1.66401 1.14901 1.08877 1.21809 0.77573 0.87767 0.85682 1.90676 1.51302 1.17189 1.85464 1.21488 1.06756 0.92602 0.82595 1.56985 1.28003 1.56463 1.40653 1.21615 0.86452 1.02258 0.94824 1.04365 0.72661 0.76646 0.74448 1.30378 1.12397 1.21755 1.16118 1.93566 1.86070 1.86347 1.31383 1.93557 1.57285 1.64133 1.82674 1.21199 0.95414 0.99799 0.92888 1.21904 0.95335 1.00107 0.97953 1.21070 0.96282 0.94416 0.86779 1.44324 1.02505 1.70549 1.16222 1.19452 0.97520 1.35764 0.86690 0.92086 1.25741 0.99389 1.00330 0.99023 1.70161 1.26023 1.42333 1.19392 0.85411 0.78073 0.78999 0.78392 1.20209 1.21897 1.20675 1.20582 0.82838 0.95841 0.95603 1.22055 1.00066 0.98735 0.95191 0.91235 0.91597 0.92897 0.74759 0.83299 0.85035 0.91060 0.90846 0.90098 0.84299 0.84188 0.85712 0.90187 0.93925 0.89701 0.96257 0.93542 0.94120 0.98234 0.93305 0.90667 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.13 71.98 0.66 -2.45 16 2 C 0.16 3.47 2.16 44.99 0.10 3.57 16 3 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 4 N -0.71 -11.50 4.36 -442.52 -1.93 -13.43 16 5 C 0.49 8.36 7.86 87.66 0.69 9.05 16 6 O -0.57 -13.29 14.68 -3.01 -0.04 -13.34 16 7 C 0.09 1.09 6.12 85.63 0.52 1.62 16 8 N -0.98 -13.89 2.61 -543.24 -1.42 -15.31 16 9 C 0.09 1.03 10.20 127.77 1.30 2.33 16 10 S 2.62 46.15 6.02 -56.49 -0.34 45.81 16 11 C -0.65 -9.58 10.52 113.37 1.19 -8.39 16 12 O -0.98 -22.27 17.09 -127.65 -2.18 -24.45 16 13 O -0.99 -22.82 16.53 -127.65 -2.11 -24.93 16 14 C -0.07 -1.99 1.79 -10.77 -0.02 -2.01 16 15 C -0.11 -3.40 5.22 30.68 0.16 -3.24 16 16 C 0.14 5.48 6.52 86.37 0.56 6.04 16 17 N -0.61 -30.10 2.99 -699.07 -2.09 -32.19 16 18 C -0.26 -14.53 9.58 84.04 0.81 -13.72 16 19 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 20 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 21 N -0.93 -54.78 11.19 21.65 0.24 -54.54 16 22 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 C 0.18 8.20 5.30 86.37 0.46 8.66 16 27 C -0.12 -4.15 5.04 30.67 0.15 -4.00 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.40 6.40 -2.39 -0.02 1.38 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.42 4.50 8.39 -92.71 -0.78 3.73 16 32 H 0.15 0.70 8.11 -2.39 -0.02 0.68 16 33 H 0.13 1.44 6.82 -2.39 -0.02 1.42 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 36 H 0.08 0.77 8.07 -2.38 -0.02 0.75 16 37 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.12 2.16 7.22 -2.39 -0.02 2.15 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.94 7.41 -2.39 -0.02 1.93 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.05 2.62 6.07 -2.39 -0.01 2.60 16 48 H 0.07 2.25 6.36 -2.39 -0.02 2.23 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.69 396.48 -0.68 -77.37 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.16 Total: 12.91 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 7.00 Total: -4.87 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -5.20 Total: -115.47 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -4.34 Total: -62.72 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 46.15 SS G_CDS: -0.34 Total: 45.81 kcal Total: -76.69 -0.68 -77.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725763348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.524 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds