Wall clock time and date at job start Wed Apr 1 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47018 * 180.02562 * 19 17 16 21 21 C 1.52991 * 109.47007 * 180.02562 * 20 19 17 22 22 S 1.81407 * 109.47172 * 179.97438 * 21 20 19 23 23 N 1.65595 * 104.44800 * 179.97438 * 22 21 20 24 24 O 1.42097 * 110.53995 * 291.62207 * 22 21 20 25 25 O 1.42095 * 110.54203 * 68.37132 * 22 21 20 26 26 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 27 27 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 35 35 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 36 36 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 37 37 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 38 38 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 39 39 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 40 40 H 1.09006 * 109.46963 * 299.99793 * 20 19 17 41 41 H 1.08994 * 109.47288 * 59.99784 * 20 19 17 42 42 H 1.09005 * 109.47382 * 299.99768 * 21 20 19 43 43 H 1.09002 * 109.47834 * 59.99732 * 21 20 19 44 44 H 0.97005 * 120.00114 * 150.00079 * 23 22 21 45 45 H 0.97002 * 120.00490 * 329.99564 * 23 22 21 46 46 H 1.09005 * 109.58831 * 293.82980 * 26 16 15 47 47 H 1.08999 * 109.70287 * 173.47071 * 26 16 15 48 48 H 1.09000 * 109.50066 * 301.34096 * 27 13 2 49 49 H 1.09007 * 109.49775 * 61.40191 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 4.1349 0.8499 -5.2142 11 1 2.5567 -0.6666 -6.2582 12 1 1.7630 1.3533 -5.1763 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 6 -0.0389 -4.5927 5.8986 21 6 -0.4079 -6.0751 5.8156 22 16 -1.2728 -6.5688 7.3319 23 7 -1.6103 -8.1748 7.1108 24 8 -0.3856 -6.5462 8.4417 25 8 -2.5496 -5.9492 7.4019 26 6 2.0706 -0.7041 3.7469 27 6 1.5298 0.0003 2.4986 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2335 -2.3998 -4.2459 33 1 3.1300 -0.7208 1.2493 34 1 0.4414 -2.1662 1.2732 35 1 1.8756 -2.6711 0.3465 36 1 3.1571 -2.9723 2.4136 37 1 1.6341 -3.8900 2.5391 38 1 0.0410 -4.3411 3.7608 39 1 1.5978 -4.7713 4.5088 40 1 0.6111 -4.4281 6.7580 41 1 -0.9454 -3.9979 6.0094 42 1 -1.0577 -6.2403 4.9561 43 1 0.4989 -6.6698 5.7050 44 1 -1.6618 -8.7694 7.8755 45 1 -1.7567 -8.5211 6.2165 46 1 3.1555 -0.6043 3.7815 47 1 1.6337 -0.2543 4.6384 48 1 1.8731 1.0347 2.4871 49 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731998804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:17 Heat of formation + Delta-G solvation = -113.637409 kcal Electronic energy + Delta-G solvation = -28800.647124 eV Core-core repulsion = 24696.483513 eV Total energy + Delta-G solvation = -4104.163611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.38757 -38.21356 -37.40226 -36.31448 -35.51827 -35.08241 -33.65141 -32.99533 -31.37802 -30.59450 -28.99003 -28.04714 -25.37877 -24.02728 -23.25127 -22.79922 -21.31931 -19.85589 -19.57771 -18.57236 -18.02125 -17.72190 -17.38123 -17.00265 -16.71974 -16.17956 -15.84067 -15.47902 -14.95396 -14.76493 -14.44832 -14.14436 -13.88567 -13.71772 -13.33075 -13.24754 -13.17118 -12.73093 -12.56870 -12.53308 -12.46049 -12.33923 -12.27060 -12.20064 -11.96221 -11.62877 -11.44277 -11.38372 -11.19802 -11.07080 -10.87854 -10.82174 -10.63295 -10.37823 -10.31490 -10.14087 -9.90591 -9.70234 -9.58111 -8.94433 -8.65904 -6.98900 -5.81037 -3.08550 -0.19957 2.43246 2.50040 2.87840 3.26423 3.40159 3.46016 3.46985 3.81796 3.94529 4.39401 4.42693 4.54236 4.55227 4.79569 4.82365 4.98832 5.02797 5.06436 5.14241 5.17716 5.35121 5.44880 5.46321 5.48751 5.52027 5.60926 5.62327 5.76962 5.78566 5.93362 5.95089 6.08457 6.16557 6.23145 6.27363 6.43549 6.52344 6.55561 6.63363 6.72436 6.88881 7.12080 7.32105 7.67412 8.04988 8.38845 9.49931 10.08074 10.42534 11.41956 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019673 B = 0.001878 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.922491 B =14909.787863 C =15677.920255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.104 3.896 16 N -0.606 5.606 17 C 0.512 3.488 18 O -0.548 6.548 19 C -0.133 4.133 20 C -0.098 4.098 21 C -0.625 4.625 22 S 2.616 3.384 23 N -1.252 6.252 24 O -0.961 6.961 25 O -0.959 6.959 26 C 0.111 3.889 27 C -0.128 4.128 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.383 0.617 32 H 0.254 0.746 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.420 0.580 45 H 0.413 0.587 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -12.065 19.138 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.367 5.367 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.018 4.018 16 N -0.340 5.340 17 C 0.300 3.700 18 O -0.426 6.426 19 C -0.174 4.174 20 C -0.137 4.137 21 C -0.754 4.754 22 S 2.707 3.293 23 N -0.925 5.925 24 O -0.951 6.951 25 O -0.948 6.948 26 C -0.011 4.011 27 C -0.167 4.167 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.250 0.750 45 H 0.239 0.761 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.650 -10.886 20.323 23.737 hybrid contribution 0.415 -0.534 -2.014 2.124 sum -5.235 -11.420 18.309 22.205 Atomic orbital electron populations 1.22530 0.99584 1.00772 0.99786 1.20195 0.91734 0.95223 0.86089 0.93618 1.42485 1.78175 1.10744 1.05248 1.19251 1.36244 0.93852 0.87276 0.91288 1.24713 1.02388 0.95988 0.98006 1.69646 1.51347 1.08598 1.28811 0.86209 0.77762 0.78593 0.83747 1.21793 1.21841 1.20839 1.21384 1.00356 0.94489 0.94689 1.21992 1.01266 0.96420 0.97056 1.21903 1.00585 0.94899 0.84448 1.48169 1.56916 1.11187 1.17694 1.20564 0.77357 0.89531 0.82508 1.90698 1.54456 1.65874 1.31567 1.21647 1.02555 0.93729 0.99512 1.21057 1.02926 0.90078 0.99636 1.30509 1.15136 1.07195 1.22593 1.04720 0.75338 0.73164 0.76079 1.53250 1.91244 1.30498 1.17491 1.93617 1.67422 1.85417 1.48653 1.93638 1.39834 1.75526 1.85780 1.21640 0.99786 0.80065 0.99603 1.22012 1.01525 0.99367 0.93783 0.93140 0.93403 0.94395 0.78243 0.93595 0.91054 0.91336 0.89520 0.91026 0.90000 0.88145 0.88305 0.89279 0.89227 0.84554 0.84372 0.75046 0.76087 0.91608 0.89276 0.90777 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.79 37.16 0.33 -2.54 16 2 C 0.18 3.27 2.72 -67.93 -0.18 3.08 16 3 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 4 N -0.72 -16.96 5.04 -53.43 -0.27 -17.23 16 5 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 7 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -27.17 13.06 55.49 0.72 -26.45 16 9 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C -0.09 -1.31 2.14 -90.58 -0.19 -1.50 16 14 C -0.13 -1.70 4.81 -26.61 -0.13 -1.83 16 15 C 0.10 1.07 6.34 -3.71 -0.02 1.05 16 16 N -0.61 -6.93 2.97 -172.77 -0.51 -7.44 16 17 C 0.51 6.07 7.70 -10.98 -0.08 5.99 16 18 O -0.55 -8.39 15.40 5.55 0.09 -8.30 16 19 C -0.13 -1.03 4.05 -27.88 -0.11 -1.14 16 20 C -0.10 -0.76 4.51 -26.73 -0.12 -0.88 16 21 C -0.62 -2.58 6.17 37.15 0.23 -2.35 16 22 S 2.62 17.34 5.97 -107.50 -0.64 16.70 16 23 N -1.25 -3.87 9.36 60.35 0.57 -3.30 16 24 O -0.96 -10.19 18.10 -57.54 -1.04 -11.23 16 25 O -0.96 -10.54 18.10 -57.54 -1.04 -11.58 16 26 C 0.11 1.31 6.43 -3.71 -0.02 1.29 16 27 C -0.13 -1.59 4.96 -26.62 -0.13 -1.73 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.82 6.46 -51.93 -0.34 0.48 16 30 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 31 H 0.38 9.33 6.04 -40.82 -0.25 9.08 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.92 6.51 -51.93 -0.34 0.58 16 35 H 0.09 1.32 6.46 -51.93 -0.34 0.99 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.63 5.93 -51.93 -0.31 0.33 16 38 H 0.10 0.62 7.69 -51.93 -0.40 0.22 16 39 H 0.10 0.55 7.94 -51.93 -0.41 0.14 16 40 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.14 0.24 8.14 -51.92 -0.42 -0.19 16 43 H 0.14 0.25 8.14 -51.92 -0.42 -0.17 16 44 H 0.42 1.03 8.96 -34.47 -0.31 0.72 16 45 H 0.41 0.11 8.96 -34.47 -0.31 -0.20 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.91 6.51 -51.93 -0.34 0.57 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -38.27 395.29 -9.69 -47.96 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.80 Total: 5.54 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.69 Total: -7.52 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.51 Total: -54.42 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -2.00 Total: -31.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 17.34 SS G_CDS: -0.64 Total: 16.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.27 -9.69 -47.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.674 kcal (2) G-P(sol) polarization free energy of solvation -38.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds