Wall clock time and date at job start Wed Apr 1 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47294 * 90.00155 * 9 7 5 11 11 H 1.48499 * 109.47218 * 210.00015 * 9 7 5 12 12 H 1.48496 * 109.47166 * 329.99846 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 C 1.53038 * 109.45877 * 60.07000 * 13 2 1 15 15 C 1.53198 * 109.31177 * 178.61246 * 14 13 2 16 16 N 1.46922 * 108.77046 * 54.63565 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.37629 * 16 15 14 18 18 O 1.21284 * 119.99934 * 180.02562 * 17 16 15 19 19 C 1.50705 * 119.99969 * 0.02562 * 17 16 15 20 20 C 1.53003 * 109.47018 * 180.02562 * 19 17 16 21 21 C 1.52991 * 109.47007 * 180.02562 * 20 19 17 22 22 S 1.81407 * 109.47172 * 179.97438 * 21 20 19 23 23 N 1.65595 * 104.44800 * 179.97438 * 22 21 20 24 24 O 1.42097 * 110.53995 * 291.62207 * 22 21 20 25 25 O 1.42095 * 110.54203 * 68.37132 * 22 21 20 26 26 C 1.46923 * 118.74066 * 306.38465 * 16 15 14 27 27 C 1.53031 * 109.46199 * 299.99863 * 13 2 1 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 31 31 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 32 32 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.45746 * 180.02562 * 13 2 1 34 34 H 1.09006 * 109.49860 * 298.56209 * 14 13 2 35 35 H 1.08998 * 109.50063 * 58.66422 * 14 13 2 36 36 H 1.09002 * 109.58382 * 294.84519 * 15 14 13 37 37 H 1.08994 * 109.58547 * 174.41899 * 15 14 13 38 38 H 1.08992 * 109.47085 * 300.00245 * 19 17 16 39 39 H 1.09001 * 109.46885 * 60.00571 * 19 17 16 40 40 H 1.09006 * 109.46963 * 299.99793 * 20 19 17 41 41 H 1.08994 * 109.47288 * 59.99784 * 20 19 17 42 42 H 1.09005 * 109.47382 * 299.99768 * 21 20 19 43 43 H 1.09002 * 109.47834 * 59.99732 * 21 20 19 44 44 H 0.97005 * 120.00114 * 150.00079 * 23 22 21 45 45 H 0.97002 * 120.00490 * 329.99564 * 23 22 21 46 46 H 1.09005 * 109.58831 * 293.82980 * 26 16 15 47 47 H 1.08999 * 109.70287 * 173.47071 * 26 16 15 48 48 H 1.09000 * 109.50066 * 301.34096 * 27 13 2 49 49 H 1.09007 * 109.49775 * 61.40191 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 4.1349 0.8499 -5.2142 11 1 2.5567 -0.6666 -6.2582 12 1 1.7630 1.3533 -5.1763 13 6 2.0400 -0.7213 1.2493 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4822 16 7 1.7086 -2.1265 3.6814 17 6 1.0552 -2.7164 4.7020 18 8 0.7603 -2.0723 5.6864 19 6 0.6911 -4.1765 4.6200 20 6 -0.0389 -4.5927 5.8986 21 6 -0.4079 -6.0751 5.8156 22 16 -1.2728 -6.5688 7.3319 23 7 -1.6103 -8.1748 7.1108 24 8 -0.3856 -6.5462 8.4417 25 8 -2.5496 -5.9492 7.4019 26 6 2.0706 -0.7041 3.7469 27 6 1.5298 0.0003 2.4986 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 -1.1527 32 1 3.2335 -2.3998 -4.2459 33 1 3.1300 -0.7208 1.2493 34 1 0.4414 -2.1662 1.2732 35 1 1.8756 -2.6711 0.3465 36 1 3.1571 -2.9723 2.4136 37 1 1.6341 -3.8900 2.5391 38 1 0.0410 -4.3411 3.7608 39 1 1.5978 -4.7713 4.5088 40 1 0.6111 -4.4281 6.7580 41 1 -0.9454 -3.9979 6.0094 42 1 -1.0577 -6.2403 4.9561 43 1 0.4989 -6.6698 5.7050 44 1 -1.6618 -8.7694 7.8755 45 1 -1.7567 -8.5211 6.2165 46 1 3.1555 -0.6043 3.7815 47 1 1.6337 -0.2543 4.6384 48 1 1.8731 1.0347 2.4871 49 1 0.4400 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731998804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:16 Heat of formation + Delta-G solvation = -144.663848 kcal Electronic energy + Delta-G solvation = -28801.992532 eV Core-core repulsion = 24696.483513 eV Total energy + Delta-G solvation = -4105.509018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32378 -39.36241 -38.06256 -36.97472 -36.85625 -35.70900 -34.63945 -33.97620 -32.60163 -31.88968 -30.11673 -29.17335 -26.64768 -25.57260 -24.30717 -23.67755 -22.41463 -20.65436 -20.35064 -19.61118 -19.23593 -18.55818 -18.22143 -17.86695 -17.30822 -16.93231 -16.69547 -16.59445 -16.09593 -15.91839 -15.54644 -15.40918 -15.24440 -14.92446 -14.30135 -14.23119 -14.18569 -13.77324 -13.68688 -13.24953 -13.14964 -13.11497 -13.03105 -13.01059 -12.96356 -12.90044 -12.83016 -12.75188 -12.60793 -12.14955 -12.00035 -11.91695 -11.73858 -11.70287 -11.57641 -11.24641 -11.15446 -11.09301 -10.87824 -10.71656 -9.62268 -8.94368 -7.91177 -5.16813 -0.68532 1.48636 1.48860 1.56918 1.63733 1.97927 2.09207 2.58377 2.78371 3.36930 3.42421 3.43798 3.78368 3.79821 3.86653 3.89608 3.94918 4.00610 4.19127 4.30050 4.37962 4.39701 4.42110 4.57225 4.61380 4.67916 4.69197 4.77571 4.85273 4.90208 4.92669 4.98004 5.02213 5.09116 5.12366 5.15106 5.29726 5.32850 5.38053 5.43991 5.55944 5.63783 5.73403 6.33109 6.42862 6.45165 7.17622 7.39751 8.18054 8.41873 9.32146 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019673 B = 0.001878 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.922491 B =14909.787863 C =15677.920255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.035 0.965 4 N -0.733 5.733 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.965 3.035 10 H -0.290 1.290 11 H -0.296 1.296 12 H -0.275 1.275 13 C -0.081 4.081 14 C -0.124 4.124 15 C 0.110 3.890 16 N -0.607 5.607 17 C 0.504 3.496 18 O -0.591 6.591 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.599 4.599 22 S 2.621 3.379 23 N -1.237 6.237 24 O -1.009 7.009 25 O -1.012 7.012 26 C 0.112 3.888 27 C -0.118 4.118 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.424 0.576 45 H 0.428 0.572 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -13.351 18.769 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.053 0.947 4 N -0.375 5.375 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.267 4.267 8 N -0.617 5.617 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.223 1.223 12 H -0.200 1.200 13 C -0.100 4.100 14 C -0.163 4.163 15 C -0.012 4.012 16 N -0.339 5.339 17 C 0.294 3.706 18 O -0.472 6.472 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.732 4.732 22 S 2.716 3.284 23 N -0.914 5.914 24 O -0.998 6.998 25 O -1.001 7.001 26 C -0.010 4.010 27 C -0.156 4.156 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.210 0.790 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.189 0.811 43 H 0.192 0.808 44 H 0.255 0.745 45 H 0.258 0.742 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.606 -12.170 19.992 24.067 hybrid contribution 0.394 -0.073 -1.889 1.931 sum -5.212 -12.243 18.103 22.467 Atomic orbital electron populations 1.22374 0.98283 1.00927 0.99979 1.20416 0.92488 0.94725 0.86099 0.94722 1.42649 1.78346 1.10595 1.05883 1.19573 1.34581 0.93979 0.88516 0.91342 1.25412 1.03397 0.96888 1.00968 1.69776 1.52954 1.09813 1.29176 0.85266 0.77670 0.77483 0.80110 1.21698 1.22306 1.19980 1.21238 0.99720 0.95465 0.93580 1.21896 1.01175 0.95407 0.97784 1.21954 1.01148 0.95797 0.82309 1.48256 1.56666 1.10984 1.18024 1.21368 0.76362 0.91162 0.81671 1.90685 1.56038 1.67254 1.33212 1.21761 1.04375 0.90829 1.00060 1.21089 1.02062 0.92203 0.99527 1.30285 1.16798 1.05040 1.21060 1.04165 0.74255 0.73483 0.76513 1.52825 1.90878 1.29016 1.18727 1.93557 1.68106 1.86257 1.51930 1.93580 1.42525 1.77000 1.86997 1.21566 1.00203 0.80700 0.98581 1.21904 1.01170 0.99628 0.92924 0.95384 0.93248 0.91693 0.78952 0.94147 0.91966 0.91378 0.91614 0.90376 0.86478 0.85612 0.85142 0.90762 0.91031 0.81053 0.80849 0.74481 0.74163 0.90755 0.90186 0.90120 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 8.79 71.98 0.63 -4.57 16 2 C 0.17 6.20 2.72 44.99 0.12 6.32 16 3 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 4 N -0.73 -34.38 5.04 -322.94 -1.63 -36.01 16 5 C -0.23 -12.54 9.93 84.03 0.83 -11.71 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.97 -56.52 13.06 21.65 0.28 -56.24 16 9 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C -0.08 -2.25 2.14 -10.77 -0.02 -2.28 16 14 C -0.12 -3.05 4.81 30.67 0.15 -2.90 16 15 C 0.11 1.90 6.34 86.37 0.55 2.45 16 16 N -0.61 -12.39 2.97 -818.91 -2.43 -14.82 16 17 C 0.50 10.86 7.70 87.66 0.67 11.54 16 18 O -0.59 -17.81 15.40 -3.04 -0.05 -17.86 16 19 C -0.13 -1.49 4.05 29.85 0.12 -1.37 16 20 C -0.11 -1.46 4.51 30.59 0.14 -1.32 16 21 C -0.60 -2.79 6.17 71.98 0.44 -2.34 16 22 S 2.62 32.45 5.97 -56.49 -0.34 32.12 16 23 N -1.24 -5.32 9.36 37.02 0.35 -4.97 16 24 O -1.01 -21.56 18.10 -127.65 -2.31 -23.87 16 25 O -1.01 -22.56 18.10 -127.65 -2.31 -24.87 16 26 C 0.11 2.48 6.43 86.36 0.56 3.03 16 27 C -0.12 -2.74 4.96 30.67 0.15 -2.59 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 30 H 0.06 1.80 6.46 -2.39 -0.02 1.79 16 31 H 0.38 18.48 6.04 -92.71 -0.56 17.92 16 32 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.67 6.51 -2.38 -0.02 1.66 16 35 H 0.07 1.93 6.46 -2.39 -0.02 1.92 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 1.23 5.93 -2.39 -0.01 1.22 16 38 H 0.13 0.87 7.69 -2.39 -0.02 0.85 16 39 H 0.13 0.73 7.94 -2.39 -0.02 0.71 16 40 H 0.07 1.21 8.10 -2.38 -0.02 1.19 16 41 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.42 1.50 8.96 -96.74 -0.87 0.64 16 45 H 0.43 -1.03 8.96 -96.74 -0.87 -1.89 16 46 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.08 1.96 7.01 -2.39 -0.02 1.94 16 48 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 1.61 6.51 -2.38 -0.02 1.60 16 Total: -1.00 -85.97 395.29 -2.90 -88.88 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -1.31 Total: 19.87 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.81 Total: -9.41 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -3.43 Total: -112.03 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -4.67 Total: -66.60 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 32.45 SS G_CDS: -0.34 Total: 32.12 kcal Total: -85.97 -2.90 -88.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.789 kcal (2) G-P(sol) polarization free energy of solvation -85.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds