Wall clock time and date at job start Wed Apr 1 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 N 1.46495 * 109.47158 * 120.00715 * 2 1 3 5 5 S 1.65603 * 119.99629 * 264.99752 * 4 2 1 6 6 C 1.81399 * 104.45067 * 65.00352 * 5 4 2 7 7 O 1.42107 * 104.27542 * 181.06986 * 5 4 2 8 8 O 1.42088 * 104.27968 * 308.92784 * 5 4 2 9 9 C 1.50703 * 109.46718 * 240.00639 * 2 1 3 10 10 O 1.21280 * 119.99833 * 264.56941 * 9 2 1 11 11 N 1.34771 * 120.00399 * 84.57399 * 9 2 1 12 12 C 1.46928 * 120.62935 * 4.36441 * 11 9 2 13 13 C 1.52759 * 109.01052 * 233.58750 * 12 11 9 14 14 C 1.53040 * 109.38241 * 305.58574 * 13 12 11 15 15 C 1.52992 * 109.44764 * 181.25344 * 14 13 12 16 16 C 1.52996 * 109.47238 * 64.94101 * 15 14 13 17 17 N 1.46506 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.36935 * 119.99846 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00308 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99913 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47329 * 120.00207 * 22 20 18 25 25 H 1.48503 * 109.46861 * 239.99711 * 22 20 18 26 26 C 1.53042 * 109.53361 * 61.24023 * 14 13 12 27 27 C 1.46922 * 120.63505 * 184.64816 * 11 9 2 28 28 H 1.08999 * 109.47180 * 175.01450 * 1 2 3 29 29 H 1.08998 * 109.47188 * 295.01307 * 1 2 3 30 30 H 1.09001 * 109.47095 * 55.01542 * 1 2 3 31 31 H 0.96997 * 120.00697 * 84.99833 * 4 2 1 32 32 H 1.09003 * 109.47218 * 59.99803 * 6 5 4 33 33 H 1.09001 * 109.47645 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46829 * 299.99616 * 6 5 4 35 35 H 1.09004 * 109.58646 * 353.42732 * 12 11 9 36 36 H 1.09004 * 109.58503 * 113.84380 * 12 11 9 37 37 H 1.09000 * 109.56112 * 185.55340 * 13 12 11 38 38 H 1.08992 * 109.35830 * 65.50067 * 13 12 11 39 39 H 1.08998 * 109.46093 * 301.22014 * 14 13 12 40 40 H 1.09003 * 109.47024 * 184.94056 * 15 14 13 41 41 H 1.09000 * 109.47688 * 304.93853 * 15 14 13 42 42 H 1.08994 * 109.47360 * 299.99878 * 16 15 14 43 43 H 1.09005 * 109.47024 * 59.99812 * 16 15 14 44 44 H 0.96998 * 119.99693 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.49548 * 178.67779 * 26 14 13 47 47 H 1.09002 * 109.52626 * 58.60579 * 26 14 13 48 48 H 1.08998 * 109.59040 * 246.15472 * 27 11 9 49 49 H 1.09002 * 109.58214 * 6.43833 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 16 2.4122 0.1770 2.5504 6 6 0.8408 0.8986 3.0986 7 8 2.8607 -0.8032 3.4765 8 8 3.2875 1.1904 2.0751 9 6 2.0323 -0.7103 -1.2306 10 8 2.3281 -1.8851 -1.1743 11 7 2.1528 -0.0401 -2.3936 12 6 1.8901 1.4042 -2.4560 13 6 0.8637 1.6763 -3.5542 14 6 1.3551 1.0691 -4.8703 15 6 0.3431 1.3677 -5.9782 16 6 0.2858 2.8768 -6.2234 17 7 -0.6829 3.1627 -7.2847 18 6 -0.9050 4.4551 -7.6789 19 1 -0.3660 5.2637 -7.2077 20 6 -1.8232 4.7260 -8.6841 21 7 -2.4805 3.7407 -9.2581 22 14 -2.1258 6.4891 -9.2223 23 1 -1.2681 7.4036 -8.4267 24 1 -1.7970 6.6300 -10.6636 25 1 -3.5534 6.8350 -9.0042 26 6 1.5044 -0.4456 -4.7107 27 6 2.5435 -0.7407 -3.6245 28 1 -0.3633 -1.0238 -0.0893 29 1 -0.3633 0.4345 0.9313 30 1 -0.3633 0.5892 -0.8420 31 1 2.1110 -1.6563 1.1947 32 1 0.1316 0.1006 3.3185 33 1 1.0077 1.4936 3.9965 34 1 0.4387 1.5351 2.3102 35 1 1.4976 1.7459 -1.4981 36 1 2.8147 1.9343 -2.6843 37 1 0.7353 2.7519 -3.6753 38 1 -0.0890 1.2244 -3.2783 39 1 2.3197 1.5035 -5.1328 40 1 0.6478 0.8620 -6.8945 41 1 -0.6417 1.0109 -5.6767 42 1 -0.0189 3.3824 -5.3071 43 1 1.2706 3.2336 -6.5250 44 1 -1.1667 2.4364 -7.7082 45 1 -3.1218 3.9300 -9.9608 46 1 1.8319 -0.8804 -5.6552 47 1 0.5457 -0.8781 -4.4243 48 1 3.5224 -0.3892 -3.9501 49 1 2.5843 -1.8137 -3.4368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732302231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:53 Heat of formation + Delta-G solvation = -102.824674 kcal Electronic energy + Delta-G solvation = -29146.286698 eV Core-core repulsion = 25042.591963 eV Total energy + Delta-G solvation = -4103.694736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77154 -38.30997 -37.57320 -36.42554 -36.01181 -35.41865 -33.64962 -31.72751 -31.05090 -30.45001 -29.88058 -28.48799 -25.68162 -24.33948 -23.46736 -22.83435 -21.23164 -20.42362 -20.09700 -19.35200 -18.52851 -17.30195 -17.11580 -16.87912 -16.68512 -15.95605 -15.65433 -15.17815 -14.84800 -14.63537 -14.50674 -14.27281 -14.05632 -13.91728 -13.77210 -13.67921 -13.42903 -13.11360 -12.96223 -12.78697 -12.63345 -12.55248 -12.50259 -12.41981 -12.25722 -12.17207 -11.53643 -11.41878 -11.33394 -11.20604 -11.05153 -10.83534 -10.68223 -10.43315 -10.32469 -10.20265 -9.95674 -9.87438 -9.70221 -8.92053 -8.87616 -6.93310 -5.78704 -3.07249 -0.26077 2.04884 2.27457 2.68197 3.31145 3.41117 3.46614 3.49027 3.68218 3.89469 4.20042 4.26208 4.39385 4.45166 4.54023 4.56892 4.70968 4.74339 4.78077 4.89827 4.96905 5.08869 5.17080 5.18246 5.31921 5.35342 5.51412 5.53252 5.58746 5.63612 5.67178 5.76402 5.79258 5.95885 5.98339 6.10840 6.28717 6.31724 6.37941 6.41156 6.49447 6.83703 6.88705 7.05921 7.67906 7.77945 8.40565 9.51411 10.10644 10.44527 11.44358 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.001967 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.539485 B =14231.274650 C =15144.165684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.124 3.876 3 H 0.115 0.885 4 N -1.104 6.104 5 S 2.613 3.387 6 C -0.676 4.676 7 O -0.954 6.954 8 O -0.954 6.954 9 C 0.520 3.480 10 O -0.536 6.536 11 N -0.604 5.604 12 C 0.099 3.901 13 C -0.133 4.133 14 C -0.083 4.083 15 C -0.121 4.121 16 C 0.153 3.847 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.129 4.129 27 C 0.112 3.888 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.427 0.573 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -9.026 24.128 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.013 3.987 3 H 0.133 0.867 4 N -0.864 5.864 5 S 2.705 3.295 6 C -0.826 4.826 7 O -0.945 6.945 8 O -0.944 6.944 9 C 0.305 3.695 10 O -0.412 6.412 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.171 4.171 14 C -0.102 4.102 15 C -0.159 4.159 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.167 4.167 27 C -0.010 4.010 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.436 -9.193 24.528 27.519 hybrid contribution -1.181 0.566 -0.687 1.479 sum 7.255 -8.627 23.841 26.372 Atomic orbital electron populations 1.22406 0.92392 1.04670 1.03951 1.20790 0.95843 0.97291 0.84772 0.86701 1.55503 1.83940 1.21009 1.25976 1.04794 0.76728 0.74591 0.73390 1.30659 1.24357 1.14349 1.13195 1.93639 1.79452 1.58777 1.62589 1.93633 1.60792 1.60714 1.79288 1.20361 0.77650 0.87209 0.84254 1.90685 1.49986 1.16093 1.84445 1.48117 1.67652 1.09486 1.08469 1.21912 1.00233 0.79825 1.00418 1.22006 0.98229 1.02704 0.94200 1.21088 0.99846 0.94463 0.94800 1.21756 0.98499 0.98128 0.97471 1.20700 0.92991 0.92003 0.91793 1.42402 1.47411 1.06202 1.41906 1.19277 1.18138 0.84866 1.14658 0.91166 1.24761 0.99627 0.97420 0.99406 1.69672 1.29966 1.29872 1.28763 0.86116 0.77561 0.84312 0.78199 1.20553 1.21866 1.21878 1.21990 0.99423 0.96834 0.98433 1.21680 0.97794 0.98427 0.83146 0.90590 0.90798 0.89900 0.73579 0.84895 0.85024 0.85046 0.89790 0.90477 0.89375 0.91303 0.90848 0.91885 0.92037 0.96300 0.96630 0.78367 0.93574 0.90418 0.91463 0.91225 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 9.39 37.16 0.35 -0.49 16 2 C 0.12 0.87 2.37 -69.08 -0.16 0.70 16 3 H 0.12 0.64 5.65 -51.93 -0.29 0.34 16 4 N -1.10 -7.73 5.30 -5.88 -0.03 -7.76 16 5 S 2.61 17.66 6.08 -107.50 -0.65 17.01 16 6 C -0.68 -1.76 9.92 101.05 1.00 -0.76 16 7 O -0.95 -9.89 18.08 -57.54 -1.04 -10.93 16 8 O -0.95 -9.78 17.39 -57.54 -1.00 -10.78 16 9 C 0.52 5.30 6.91 -10.99 -0.08 5.22 16 10 O -0.54 -7.13 15.53 5.56 0.09 -7.04 16 11 N -0.60 -5.61 2.98 -173.03 -0.52 -6.13 16 12 C 0.10 0.75 6.20 -3.93 -0.02 0.73 16 13 C -0.13 -1.23 5.13 -26.83 -0.14 -1.37 16 14 C -0.08 -0.89 2.15 -90.58 -0.19 -1.09 16 15 C -0.12 -1.76 4.80 -26.74 -0.13 -1.88 16 16 C 0.15 2.87 6.01 -4.04 -0.02 2.85 16 17 N -0.74 -18.33 5.60 -59.91 -0.34 -18.67 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C -0.13 -1.24 5.36 -26.61 -0.14 -1.38 16 27 C 0.11 1.06 6.42 -3.72 -0.02 1.04 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.18 5.73 -51.93 -0.30 -0.12 16 30 H 0.08 0.37 7.79 -51.93 -0.40 -0.03 16 31 H 0.43 3.18 8.07 -34.47 -0.28 2.90 16 32 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.13 0.16 6.88 -51.92 -0.36 -0.20 16 35 H 0.08 0.45 5.12 -51.93 -0.27 0.18 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.86 6.50 -51.93 -0.34 0.52 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.35 6.53 -51.93 -0.34 0.01 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.38 10.08 7.67 -40.82 -0.31 9.76 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.95 7.03 -51.93 -0.37 0.59 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -38.14 395.85 -9.50 -47.64 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.87 Total: 4.68 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 0.19 Total: -3.74 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.16 Total: -59.94 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.95 Total: -28.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 17.66 SS G_CDS: -0.65 Total: 17.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.14 -9.50 -47.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732302231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.184 kcal (2) G-P(sol) polarization free energy of solvation -38.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds