Wall clock time and date at job start Wed Apr 1 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 N 1.46495 * 109.47158 * 120.00715 * 2 1 3 5 5 S 1.65603 * 119.99629 * 264.99752 * 4 2 1 6 6 C 1.81399 * 104.45067 * 65.00352 * 5 4 2 7 7 O 1.42107 * 104.27542 * 181.06986 * 5 4 2 8 8 O 1.42088 * 104.27968 * 308.92784 * 5 4 2 9 9 C 1.50703 * 109.46718 * 240.00639 * 2 1 3 10 10 O 1.21280 * 119.99833 * 264.56941 * 9 2 1 11 11 N 1.34771 * 120.00399 * 84.57399 * 9 2 1 12 12 C 1.46928 * 120.62935 * 4.36441 * 11 9 2 13 13 C 1.52759 * 109.01052 * 233.58750 * 12 11 9 14 14 C 1.53040 * 109.38241 * 305.58574 * 13 12 11 15 15 C 1.52992 * 109.44764 * 181.25344 * 14 13 12 16 16 C 1.52996 * 109.47238 * 64.94101 * 15 14 13 17 17 N 1.46506 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.36935 * 119.99846 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00308 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99913 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47125 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47329 * 120.00207 * 22 20 18 25 25 H 1.48503 * 109.46861 * 239.99711 * 22 20 18 26 26 C 1.53042 * 109.53361 * 61.24023 * 14 13 12 27 27 C 1.46922 * 120.63505 * 184.64816 * 11 9 2 28 28 H 1.08999 * 109.47180 * 175.01450 * 1 2 3 29 29 H 1.08998 * 109.47188 * 295.01307 * 1 2 3 30 30 H 1.09001 * 109.47095 * 55.01542 * 1 2 3 31 31 H 0.96997 * 120.00697 * 84.99833 * 4 2 1 32 32 H 1.09003 * 109.47218 * 59.99803 * 6 5 4 33 33 H 1.09001 * 109.47645 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46829 * 299.99616 * 6 5 4 35 35 H 1.09004 * 109.58646 * 353.42732 * 12 11 9 36 36 H 1.09004 * 109.58503 * 113.84380 * 12 11 9 37 37 H 1.09000 * 109.56112 * 185.55340 * 13 12 11 38 38 H 1.08992 * 109.35830 * 65.50067 * 13 12 11 39 39 H 1.08998 * 109.46093 * 301.22014 * 14 13 12 40 40 H 1.09003 * 109.47024 * 184.94056 * 15 14 13 41 41 H 1.09000 * 109.47688 * 304.93853 * 15 14 13 42 42 H 1.08994 * 109.47360 * 299.99878 * 16 15 14 43 43 H 1.09005 * 109.47024 * 59.99812 * 16 15 14 44 44 H 0.96998 * 119.99693 * 0.02562 * 17 16 15 45 45 H 0.97000 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.49548 * 178.67779 * 26 14 13 47 47 H 1.09002 * 109.52626 * 58.60579 * 26 14 13 48 48 H 1.08998 * 109.59040 * 246.15472 * 27 11 9 49 49 H 1.09002 * 109.58214 * 6.43833 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 16 2.4122 0.1770 2.5504 6 6 0.8408 0.8986 3.0986 7 8 2.8607 -0.8032 3.4765 8 8 3.2875 1.1904 2.0751 9 6 2.0323 -0.7103 -1.2306 10 8 2.3281 -1.8851 -1.1743 11 7 2.1528 -0.0401 -2.3936 12 6 1.8901 1.4042 -2.4560 13 6 0.8637 1.6763 -3.5542 14 6 1.3551 1.0691 -4.8703 15 6 0.3431 1.3677 -5.9782 16 6 0.2858 2.8768 -6.2234 17 7 -0.6829 3.1627 -7.2847 18 6 -0.9050 4.4551 -7.6789 19 1 -0.3660 5.2637 -7.2077 20 6 -1.8232 4.7260 -8.6841 21 7 -2.4805 3.7407 -9.2581 22 14 -2.1258 6.4891 -9.2223 23 1 -1.2681 7.4036 -8.4267 24 1 -1.7970 6.6300 -10.6636 25 1 -3.5534 6.8350 -9.0042 26 6 1.5044 -0.4456 -4.7107 27 6 2.5435 -0.7407 -3.6245 28 1 -0.3633 -1.0238 -0.0893 29 1 -0.3633 0.4345 0.9313 30 1 -0.3633 0.5892 -0.8420 31 1 2.1110 -1.6563 1.1947 32 1 0.1316 0.1006 3.3185 33 1 1.0077 1.4936 3.9965 34 1 0.4387 1.5351 2.3102 35 1 1.4976 1.7459 -1.4981 36 1 2.8147 1.9343 -2.6843 37 1 0.7353 2.7519 -3.6753 38 1 -0.0890 1.2244 -3.2783 39 1 2.3197 1.5035 -5.1328 40 1 0.6478 0.8620 -6.8945 41 1 -0.6417 1.0109 -5.6767 42 1 -0.0189 3.3824 -5.3071 43 1 1.2706 3.2336 -6.5250 44 1 -1.1667 2.4364 -7.7082 45 1 -3.1218 3.9300 -9.9608 46 1 1.8319 -0.8804 -5.6552 47 1 0.5457 -0.8781 -4.4243 48 1 3.5224 -0.3892 -3.9501 49 1 2.5843 -1.8137 -3.4368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732302231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:52 Heat of formation + Delta-G solvation = -133.293123 kcal Electronic energy + Delta-G solvation = -29147.607909 eV Core-core repulsion = 25042.591963 eV Total energy + Delta-G solvation = -4105.015947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.51417 -39.17651 -38.21663 -37.06236 -36.90523 -36.58302 -35.04532 -33.05347 -32.20448 -30.90724 -30.26406 -29.78156 -26.83219 -25.44481 -24.28632 -24.11286 -22.40877 -21.42123 -20.61499 -20.07768 -19.19859 -19.03371 -17.90458 -17.64761 -17.21959 -16.68257 -16.56427 -16.41443 -15.87657 -15.64622 -15.43522 -15.33590 -15.10076 -14.82952 -14.49857 -14.44801 -14.19386 -14.04091 -13.91310 -13.68905 -13.25299 -13.19757 -13.17692 -13.14239 -13.02657 -12.88985 -12.84463 -12.65460 -12.46939 -12.26002 -12.13963 -12.04020 -11.99390 -11.94304 -11.60479 -11.37284 -11.16578 -10.92779 -10.85979 -10.51848 -9.68813 -8.96421 -7.93863 -5.22339 -0.72632 1.42347 1.48934 1.49625 1.59786 1.64453 2.01475 2.57620 2.86478 3.21891 3.29443 3.40280 3.70377 3.72439 3.88694 3.90017 4.00444 4.04056 4.14317 4.16268 4.24075 4.35884 4.37408 4.43627 4.55929 4.61278 4.66996 4.70577 4.80986 4.84792 4.90866 4.93858 5.00260 5.02334 5.08878 5.13758 5.24189 5.28201 5.34940 5.42737 5.52177 5.57870 5.62565 5.91987 6.29429 6.34210 7.03178 7.34891 8.13434 8.34492 9.30176 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.001967 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.539485 B =14231.274650 C =15144.165684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.123 3.877 3 H 0.133 0.867 4 N -1.107 6.107 5 S 2.614 3.386 6 C -0.651 4.651 7 O -1.000 7.000 8 O -0.997 6.997 9 C 0.510 3.490 10 O -0.576 6.576 11 N -0.604 5.604 12 C 0.098 3.902 13 C -0.130 4.130 14 C -0.076 4.076 15 C -0.108 4.108 16 C 0.150 3.850 17 N -0.751 5.751 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.293 1.293 26 C -0.119 4.119 27 C 0.112 3.888 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.423 0.577 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.032 0.968 43 H 0.016 0.984 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.811 -7.308 25.864 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.150 0.850 4 N -0.867 5.867 5 S 2.711 3.289 6 C -0.805 4.805 7 O -0.990 6.990 8 O -0.987 6.987 9 C 0.298 3.702 10 O -0.455 6.455 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.168 4.168 14 C -0.095 4.095 15 C -0.146 4.146 16 C 0.024 3.976 17 N -0.394 5.394 18 C -0.373 4.373 19 H 0.096 0.904 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.220 1.220 26 C -0.158 4.158 27 C -0.010 4.010 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.259 0.741 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.912 -7.464 26.279 28.441 hybrid contribution -0.992 0.019 -1.193 1.552 sum 6.921 -7.445 25.086 27.067 Atomic orbital electron populations 1.22468 0.90367 1.04566 1.05939 1.20969 0.97330 0.97446 0.83034 0.85005 1.55434 1.84207 1.20739 1.26285 1.04537 0.78166 0.73570 0.72589 1.30447 1.20204 1.15231 1.14639 1.93578 1.81520 1.60393 1.63535 1.93573 1.63976 1.61296 1.79855 1.21035 0.76957 0.86963 0.85294 1.90663 1.51759 1.17917 1.85172 1.48230 1.67061 1.10187 1.08187 1.22058 1.00294 0.78757 1.01284 1.21955 0.98782 1.02341 0.93688 1.21015 0.98788 0.95319 0.94356 1.21619 0.99423 0.95008 0.98517 1.20913 0.91337 0.94935 0.90375 1.42690 1.48396 1.05095 1.43194 1.19701 1.17327 0.86222 1.14063 0.90444 1.25606 1.00136 1.01396 1.00135 1.69828 1.30973 1.31926 1.29581 0.85065 0.77306 0.79920 0.77435 1.18807 1.22258 1.22015 1.21879 0.99223 0.95958 0.98698 1.21617 0.98113 0.97920 0.83344 0.91619 0.87714 0.89195 0.74090 0.82683 0.83111 0.82564 0.87006 0.89685 0.89517 0.91141 0.90400 0.92899 0.92621 0.95042 0.96624 0.79696 0.94082 0.90143 0.92055 0.90381 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.39 71.98 0.68 -0.48 16 2 C 0.12 1.48 2.37 44.25 0.11 1.58 16 3 H 0.13 1.08 5.65 -2.39 -0.01 1.07 16 4 N -1.11 -14.47 5.30 -172.52 -0.91 -15.39 16 5 S 2.61 32.34 6.08 -56.49 -0.34 32.00 16 6 C -0.65 -0.70 9.92 113.37 1.12 0.43 16 7 O -1.00 -20.89 18.08 -127.65 -2.31 -23.20 16 8 O -1.00 -19.72 17.39 -127.65 -2.22 -21.94 16 9 C 0.51 9.99 6.91 87.66 0.61 10.59 16 10 O -0.58 -15.58 15.53 -3.03 -0.05 -15.63 16 11 N -0.60 -10.39 2.98 -819.75 -2.44 -12.83 16 12 C 0.10 1.23 6.20 86.22 0.53 1.77 16 13 C -0.13 -2.08 5.13 30.53 0.16 -1.93 16 14 C -0.08 -1.51 2.15 -10.77 -0.02 -1.53 16 15 C -0.11 -3.05 4.80 30.59 0.15 -2.91 16 16 C 0.15 5.50 6.01 86.38 0.52 6.02 16 17 N -0.75 -37.40 5.60 -343.45 -1.92 -39.32 16 18 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 21 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 22 Si 0.97 45.39 29.55 68.60 2.03 47.41 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 C -0.12 -2.19 5.36 30.67 0.16 -2.03 16 27 C 0.11 2.06 6.42 86.36 0.55 2.61 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.02 5.73 -2.39 -0.01 0.00 16 30 H 0.09 0.49 7.79 -2.39 -0.02 0.48 16 31 H 0.42 6.40 8.07 -96.75 -0.78 5.62 16 32 H 0.15 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.16 -0.49 6.88 -2.39 -0.02 -0.50 16 35 H 0.11 0.79 5.12 -2.39 -0.01 0.78 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.46 6.50 -2.39 -0.02 1.44 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.03 1.10 6.53 -2.39 -0.02 1.08 16 43 H 0.02 0.58 8.14 -2.38 -0.02 0.57 16 44 H 0.37 19.85 7.67 -92.71 -0.71 19.14 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.08 1.66 7.03 -2.39 -0.02 1.64 16 Total: -1.00 -84.46 395.85 -2.54 -87.00 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.52 Total: 23.22 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.87 Total: -2.40 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.00 Total: -126.47 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -4.57 Total: -60.77 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 32.34 SS G_CDS: -0.34 Total: 32.00 kcal Total: -84.46 -2.54 -87.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732302231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.294 kcal (2) G-P(sol) polarization free energy of solvation -84.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds