Wall clock time and date at job start Wed Apr 1 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.79946 * 2 1 4 4 C 1.54936 * 110.74125 * 236.70765 * 2 1 3 5 5 N 1.48121 * 103.25718 * 279.03799 * 4 2 1 6 6 C 1.34778 * 127.03169 * 140.74233 * 5 4 2 7 7 O 1.21280 * 119.99396 * 179.97438 * 6 5 4 8 8 C 1.50692 * 120.00483 * 359.95866 * 6 5 4 9 9 C 1.53001 * 109.47653 * 180.02562 * 8 6 5 10 10 S 1.81398 * 109.47310 * 179.97438 * 9 8 6 11 11 O 1.42098 * 110.54159 * 291.62362 * 10 9 8 12 12 O 1.42100 * 110.54203 * 68.37804 * 10 9 8 13 13 N 1.65607 * 104.44630 * 179.97438 * 10 9 8 14 14 C 1.46500 * 119.99803 * 89.99957 * 13 10 9 15 15 C 1.46496 * 120.00075 * 270.00021 * 13 10 9 16 16 C 1.47482 * 105.93165 * 320.70951 * 5 4 2 17 17 C 1.54008 * 107.08359 * 25.44224 * 16 5 4 18 18 H 1.09001 * 110.32829 * 239.70221 * 17 16 5 19 19 C 1.53004 * 110.32456 * 117.58981 * 17 16 5 20 20 N 1.46499 * 109.47198 * 66.45392 * 19 17 16 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.08995 * 109.47292 * 296.71038 * 1 2 3 30 30 H 1.09005 * 109.47242 * 56.71120 * 1 2 3 31 31 H 1.09005 * 109.47163 * 176.70757 * 1 2 3 32 32 H 1.09002 * 110.66473 * 160.59825 * 4 2 1 33 33 H 1.09006 * 110.66114 * 37.48067 * 4 2 1 34 34 H 1.09008 * 109.47059 * 300.00188 * 8 6 5 35 35 H 1.09001 * 109.47183 * 59.99902 * 8 6 5 36 36 H 1.08996 * 109.46590 * 300.00257 * 9 8 6 37 37 H 1.09001 * 109.46977 * 59.99689 * 9 8 6 38 38 H 1.08998 * 109.46930 * 0.02562 * 14 13 10 39 39 H 1.08997 * 109.46883 * 119.99702 * 14 13 10 40 40 H 1.08999 * 109.47331 * 240.00000 * 14 13 10 41 41 H 1.09001 * 109.47090 * 90.00073 * 15 13 10 42 42 H 1.08999 * 109.47177 * 210.00175 * 15 13 10 43 43 H 1.09003 * 109.47237 * 330.00006 * 15 13 10 44 44 H 1.09000 * 109.91203 * 266.08808 * 16 5 4 45 45 H 1.09000 * 110.07529 * 144.89210 * 16 5 4 46 46 H 1.09009 * 109.46730 * 306.45180 * 19 17 16 47 47 H 1.08998 * 109.46846 * 186.45724 * 19 17 16 48 48 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0787 -0.7953 -1.2111 5 7 1.9872 -2.2039 -0.7622 6 6 1.6235 -3.2698 -1.5024 7 8 1.5929 -4.3739 -1.0015 8 6 1.2545 -3.0898 -2.9524 9 6 0.8834 -4.4456 -3.5565 10 16 0.4385 -4.2287 -5.3016 11 8 -0.7806 -3.5083 -5.4196 12 8 1.5804 -3.8666 -6.0660 13 7 0.0644 -5.7545 -5.8254 14 6 -1.3120 -6.2463 -5.7256 15 6 1.1098 -6.6126 -6.3885 16 6 2.3763 -2.2014 0.6604 17 6 2.0776 -0.7936 1.2087 18 1 2.9907 -0.3320 1.5845 19 6 1.0253 -0.8671 2.3170 20 7 1.5802 -1.5792 3.4708 21 6 0.8137 -1.7736 4.5888 22 1 -0.1984 -1.3981 4.6216 23 6 1.3376 -2.4534 5.6798 24 7 2.5712 -2.9107 5.6399 25 14 0.2923 -2.7180 7.2052 26 1 -1.0473 -2.1114 6.9986 27 1 0.1425 -4.1739 7.4562 28 1 0.9505 -2.0793 8.3732 29 1 -0.3633 0.4619 0.9179 30 1 -0.3634 0.5641 -0.8591 31 1 -0.3634 -1.0260 -0.0590 32 1 3.1146 -0.5226 -1.4130 33 1 1.4580 -0.6313 -2.0921 34 1 0.4035 -2.4129 -3.0294 35 1 2.1025 -2.6703 -3.4937 36 1 1.7341 -5.1227 -3.4794 37 1 0.0353 -4.8647 -3.0150 38 1 -1.9427 -5.4738 -5.2855 39 1 -1.6823 -6.4941 -6.7203 40 1 -1.3351 -7.1365 -5.0970 41 1 1.5695 -7.1963 -5.5909 42 1 0.6700 -7.2859 -7.1242 43 1 1.8677 -5.9941 -6.8692 44 1 3.4403 -2.4184 0.7546 45 1 1.7962 -2.9440 1.2083 46 1 0.1474 -1.3988 1.9497 47 1 0.7406 0.1419 2.6152 48 1 2.4891 -1.9168 3.4411 49 1 2.9373 -3.3854 6.4025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733560222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:18 Heat of formation + Delta-G solvation = -86.551036 kcal Electronic energy + Delta-G solvation = -29198.084046 eV Core-core repulsion = 25095.094988 eV Total energy + Delta-G solvation = -4102.989058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.26544 -38.17034 -37.55725 -36.66641 -36.23144 -34.67518 -33.49796 -32.70223 -31.16855 -29.17504 -28.52785 -27.04567 -25.99553 -25.14198 -24.39666 -22.97134 -21.77057 -19.37836 -19.27944 -19.07715 -18.20486 -17.45991 -16.98453 -16.90262 -16.47780 -16.19200 -15.54809 -15.40418 -14.87393 -14.81192 -14.69406 -13.96521 -13.66688 -13.60592 -13.40955 -13.32791 -13.06933 -13.04173 -12.84312 -12.81792 -12.75772 -12.46739 -12.21471 -12.02197 -11.97836 -11.97364 -11.84837 -11.77328 -11.63163 -11.22091 -11.03845 -10.86903 -10.58949 -10.48353 -10.24492 -9.95351 -9.89626 -9.68427 -9.51550 -8.88061 -8.62408 -6.92147 -5.76385 -3.05165 -0.19126 2.16844 2.56537 2.90063 3.42163 3.43733 3.49188 3.51497 3.75987 3.99179 4.24513 4.38790 4.39549 4.49447 4.60324 4.80241 4.87283 4.90753 4.95074 4.97057 5.10380 5.14784 5.29900 5.35127 5.36804 5.37261 5.41755 5.43370 5.49917 5.55466 5.59200 5.75920 5.79858 5.99974 6.01399 6.04412 6.12635 6.24742 6.30566 6.39449 6.47490 6.70866 6.85592 7.54165 7.70576 8.11866 8.42373 9.53601 10.10677 10.44910 11.46563 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.002223 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.512924 B =12593.624257 C =13353.008587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.537 3.463 7 O -0.533 6.533 8 C -0.130 4.130 9 C -0.612 4.612 10 S 2.610 3.390 11 O -0.951 6.951 12 O -0.953 6.953 13 N -1.007 6.007 14 C 0.084 3.916 15 C 0.081 3.919 16 C 0.112 3.888 17 C -0.104 4.104 18 H 0.086 0.914 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.024 0.976 47 H 0.022 0.978 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -1.232 -26.868 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.410 6.410 8 C -0.172 4.172 9 C -0.741 4.741 10 S 2.703 3.297 11 O -0.942 6.942 12 O -0.943 6.943 13 N -0.846 5.846 14 C -0.061 4.061 15 C -0.064 4.064 16 C -0.010 4.010 17 C -0.124 4.124 18 H 0.104 0.896 19 C 0.034 3.966 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.129 -1.181 -27.081 27.286 hybrid contribution -0.054 -0.805 1.565 1.761 sum -3.183 -1.986 -25.516 25.790 Atomic orbital electron populations 1.21838 0.94212 1.02189 1.02032 1.22253 0.96733 0.98984 0.93820 0.89252 1.22736 1.01248 0.80743 0.97885 1.48806 1.66617 1.07254 1.12373 1.19699 0.77245 0.83484 0.87245 1.90743 1.53119 1.24158 1.72941 1.21328 1.04497 0.95875 0.95466 1.30476 1.13577 1.05498 1.24526 1.05090 0.74408 0.73089 0.77114 1.93603 1.44814 1.69664 1.86069 1.93587 1.52660 1.81135 1.66899 1.57252 1.15669 1.34969 1.76673 1.21606 0.80761 1.00916 1.02850 1.21624 0.90424 0.95290 0.99103 1.22187 1.00381 0.98817 0.79640 1.22352 1.00561 0.94068 0.95392 0.89568 1.20801 0.93671 0.95454 0.86652 1.42410 1.15451 1.67149 1.12791 1.19247 0.95950 1.29516 0.92256 0.91187 1.24744 0.96570 1.01142 0.98548 1.69669 1.14269 1.43164 1.31025 0.86121 0.79313 0.77484 0.83301 1.20580 1.21873 1.21871 0.91311 0.93011 0.92416 0.90506 0.90211 0.87411 0.87468 0.84160 0.84113 0.89471 0.91614 0.91917 0.92491 0.90529 0.89650 0.91698 0.89044 0.95808 0.95982 0.78328 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.98 37.16 0.30 -1.36 16 2 C -0.10 -1.09 3.60 -88.75 -0.32 -1.41 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.10 0.95 6.40 -2.13 -0.01 0.94 16 5 N -0.62 -8.34 3.19 -169.76 -0.54 -8.88 16 6 C 0.54 7.59 7.89 -10.99 -0.09 7.50 16 7 O -0.53 -9.75 16.32 5.56 0.09 -9.66 16 8 C -0.13 -1.25 4.64 -27.89 -0.13 -1.38 16 9 C -0.61 -5.28 5.47 37.16 0.20 -5.08 16 10 S 2.61 23.02 5.41 -107.50 -0.58 22.43 16 11 O -0.95 -10.83 16.57 -57.54 -0.95 -11.78 16 12 O -0.95 -10.68 16.57 -57.54 -0.95 -11.63 16 13 N -1.01 -7.14 3.52 -129.21 -0.45 -7.60 16 14 C 0.08 0.48 10.62 59.85 0.64 1.11 16 15 C 0.08 0.45 10.68 59.84 0.64 1.09 16 16 C 0.11 1.81 6.31 -2.98 -0.02 1.80 16 17 C -0.10 -1.57 3.00 -89.24 -0.27 -1.84 16 18 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.13 4.17 -4.04 -0.02 3.12 16 20 N -0.73 -18.39 5.33 -59.90 -0.32 -18.71 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H 0.07 0.85 6.67 -51.93 -0.35 0.50 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.75 7.61 -51.93 -0.40 0.36 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.59 7.15 -51.93 -0.37 0.22 16 34 H 0.11 0.83 7.91 -51.92 -0.41 0.42 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.14 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.14 1.18 8.10 -51.92 -0.42 0.76 16 38 H 0.09 0.52 6.87 -51.93 -0.36 0.17 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 43 H 0.08 0.52 6.91 -51.93 -0.36 0.16 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.85 7.48 -51.93 -0.39 1.46 16 46 H 0.02 0.49 6.85 -51.92 -0.36 0.13 16 47 H 0.02 0.43 7.55 -51.93 -0.39 0.04 16 48 H 0.38 10.08 7.51 -40.82 -0.31 9.78 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -38.02 403.29 -9.55 -47.57 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.29 Total: 5.13 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.68 Total: -2.88 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.59 Total: -62.88 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.82 Total: -33.07 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 23.02 SS G_CDS: -0.58 Total: 22.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.02 -9.55 -47.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.983 kcal (2) G-P(sol) polarization free energy of solvation -38.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds