Wall clock time and date at job start Wed Apr 1 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.79946 * 2 1 4 4 C 1.54936 * 110.74125 * 236.70765 * 2 1 3 5 5 N 1.48121 * 103.25718 * 279.03799 * 4 2 1 6 6 C 1.34778 * 127.03169 * 140.74233 * 5 4 2 7 7 O 1.21280 * 119.99396 * 179.97438 * 6 5 4 8 8 C 1.50692 * 120.00483 * 359.95866 * 6 5 4 9 9 C 1.53001 * 109.47653 * 180.02562 * 8 6 5 10 10 S 1.81398 * 109.47310 * 179.97438 * 9 8 6 11 11 O 1.42098 * 110.54159 * 291.62362 * 10 9 8 12 12 O 1.42100 * 110.54203 * 68.37804 * 10 9 8 13 13 N 1.65607 * 104.44630 * 179.97438 * 10 9 8 14 14 C 1.46500 * 119.99803 * 89.99957 * 13 10 9 15 15 C 1.46496 * 120.00075 * 270.00021 * 13 10 9 16 16 C 1.47482 * 105.93165 * 320.70951 * 5 4 2 17 17 C 1.54008 * 107.08359 * 25.44224 * 16 5 4 18 18 H 1.09001 * 110.32829 * 239.70221 * 17 16 5 19 19 C 1.53004 * 110.32456 * 117.58981 * 17 16 5 20 20 N 1.46499 * 109.47198 * 66.45392 * 19 17 16 21 21 C 1.36939 * 119.99933 * 180.27608 * 20 19 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 19 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 19 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47201 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47080 * 120.00466 * 25 23 21 28 28 H 1.48506 * 109.47018 * 240.00565 * 25 23 21 29 29 H 1.08995 * 109.47292 * 296.71038 * 1 2 3 30 30 H 1.09005 * 109.47242 * 56.71120 * 1 2 3 31 31 H 1.09005 * 109.47163 * 176.70757 * 1 2 3 32 32 H 1.09002 * 110.66473 * 160.59825 * 4 2 1 33 33 H 1.09006 * 110.66114 * 37.48067 * 4 2 1 34 34 H 1.09008 * 109.47059 * 300.00188 * 8 6 5 35 35 H 1.09001 * 109.47183 * 59.99902 * 8 6 5 36 36 H 1.08996 * 109.46590 * 300.00257 * 9 8 6 37 37 H 1.09001 * 109.46977 * 59.99689 * 9 8 6 38 38 H 1.08998 * 109.46930 * 0.02562 * 14 13 10 39 39 H 1.08997 * 109.46883 * 119.99702 * 14 13 10 40 40 H 1.08999 * 109.47331 * 240.00000 * 14 13 10 41 41 H 1.09001 * 109.47090 * 90.00073 * 15 13 10 42 42 H 1.08999 * 109.47177 * 210.00175 * 15 13 10 43 43 H 1.09003 * 109.47237 * 330.00006 * 15 13 10 44 44 H 1.09000 * 109.91203 * 266.08808 * 16 5 4 45 45 H 1.09000 * 110.07529 * 144.89210 * 16 5 4 46 46 H 1.09009 * 109.46730 * 306.45180 * 19 17 16 47 47 H 1.08998 * 109.46846 * 186.45724 * 19 17 16 48 48 H 0.97001 * 119.99790 * 359.97438 * 20 19 17 49 49 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0787 -0.7953 -1.2111 5 7 1.9872 -2.2039 -0.7622 6 6 1.6235 -3.2698 -1.5024 7 8 1.5929 -4.3739 -1.0015 8 6 1.2545 -3.0898 -2.9524 9 6 0.8834 -4.4456 -3.5565 10 16 0.4385 -4.2287 -5.3016 11 8 -0.7806 -3.5083 -5.4196 12 8 1.5804 -3.8666 -6.0660 13 7 0.0644 -5.7545 -5.8254 14 6 -1.3120 -6.2463 -5.7256 15 6 1.1098 -6.6126 -6.3885 16 6 2.3763 -2.2014 0.6604 17 6 2.0776 -0.7936 1.2087 18 1 2.9907 -0.3320 1.5845 19 6 1.0253 -0.8671 2.3170 20 7 1.5802 -1.5792 3.4708 21 6 0.8137 -1.7736 4.5888 22 1 -0.1984 -1.3981 4.6216 23 6 1.3376 -2.4534 5.6798 24 7 2.5712 -2.9107 5.6399 25 14 0.2923 -2.7180 7.2052 26 1 -1.0473 -2.1114 6.9986 27 1 0.1425 -4.1739 7.4562 28 1 0.9505 -2.0793 8.3732 29 1 -0.3633 0.4619 0.9179 30 1 -0.3634 0.5641 -0.8591 31 1 -0.3634 -1.0260 -0.0590 32 1 3.1146 -0.5226 -1.4130 33 1 1.4580 -0.6313 -2.0921 34 1 0.4035 -2.4129 -3.0294 35 1 2.1025 -2.6703 -3.4937 36 1 1.7341 -5.1227 -3.4794 37 1 0.0353 -4.8647 -3.0150 38 1 -1.9427 -5.4738 -5.2855 39 1 -1.6823 -6.4941 -6.7203 40 1 -1.3351 -7.1365 -5.0970 41 1 1.5695 -7.1963 -5.5909 42 1 0.6700 -7.2859 -7.1242 43 1 1.8677 -5.9941 -6.8692 44 1 3.4403 -2.4184 0.7546 45 1 1.7962 -2.9440 1.2083 46 1 0.1474 -1.3988 1.9497 47 1 0.7406 0.1419 2.6152 48 1 2.4891 -1.9168 3.4411 49 1 2.9373 -3.3854 6.4025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733560222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:17 Heat of formation + Delta-G solvation = -115.829165 kcal Electronic energy + Delta-G solvation = -29199.353641 eV Core-core repulsion = 25095.094988 eV Total energy + Delta-G solvation = -4104.258653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36494 -39.34189 -38.33490 -37.28359 -36.90542 -36.45166 -34.48728 -33.97787 -32.80843 -30.63173 -28.95504 -28.17718 -27.10046 -26.09937 -25.43371 -24.48618 -23.05783 -20.38194 -20.36057 -19.95232 -19.20054 -18.77769 -18.23077 -17.73769 -17.34064 -17.07850 -16.77129 -16.48405 -16.25932 -15.53532 -15.42240 -15.38901 -15.30900 -14.77415 -14.53069 -14.21765 -14.09085 -13.97008 -13.71033 -13.63346 -13.58743 -13.31146 -13.23066 -13.18120 -13.08983 -12.90756 -12.77641 -12.73611 -12.57570 -12.57014 -12.54239 -12.14689 -12.00230 -11.91163 -11.63934 -11.55091 -11.37259 -11.02823 -10.94810 -10.02483 -9.75470 -9.01514 -7.98038 -5.26538 -0.88053 1.43984 1.45411 1.50060 1.54984 1.55210 1.90191 2.53267 2.72137 3.08376 3.22414 3.35242 3.42636 3.54025 3.72323 3.74330 3.82007 3.87326 4.18734 4.22373 4.30131 4.33935 4.39113 4.51470 4.57357 4.58202 4.61730 4.67048 4.74618 4.77955 4.78904 4.89131 4.95437 4.96490 4.99245 5.01584 5.04267 5.06851 5.18583 5.27524 5.35943 5.47268 5.53191 5.54962 6.24935 6.50458 7.03637 7.30755 8.07326 8.29458 9.25838 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.002223 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.512924 B =12593.624257 C =13353.008587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.122 0.878 4 C 0.095 3.905 5 N -0.617 5.617 6 C 0.528 3.472 7 O -0.587 6.587 8 C -0.132 4.132 9 C -0.609 4.609 10 S 2.634 3.366 11 O -0.977 6.977 12 O -0.976 6.976 13 N -1.009 6.009 14 C 0.075 3.925 15 C 0.072 3.928 16 C 0.116 3.884 17 C -0.097 4.097 18 H 0.090 0.910 19 C 0.164 3.836 20 N -0.747 5.747 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.295 1.295 28 H -0.290 1.290 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.013 0.987 47 H 0.030 0.970 48 H 0.373 0.627 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 0.176 -28.949 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.140 0.860 4 C -0.026 4.026 5 N -0.350 5.350 6 C 0.317 3.683 7 O -0.468 6.468 8 C -0.173 4.173 9 C -0.739 4.739 10 S 2.727 3.273 11 O -0.967 6.967 12 O -0.966 6.966 13 N -0.848 5.848 14 C -0.070 4.070 15 C -0.072 4.072 16 C -0.007 4.007 17 C -0.116 4.116 18 H 0.109 0.891 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.223 1.223 28 H -0.217 1.217 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.031 0.969 47 H 0.048 0.952 48 H 0.205 0.795 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.803 0.290 -29.209 29.457 hybrid contribution 0.110 -1.268 2.167 2.513 sum -3.692 -0.978 -27.042 27.311 Atomic orbital electron populations 1.21833 0.94465 1.01079 1.02866 1.22318 0.96445 1.00140 0.91959 0.86026 1.23083 1.03566 0.77682 0.98282 1.48923 1.65907 1.09100 1.11041 1.20566 0.76131 0.82726 0.88874 1.90714 1.55391 1.26328 1.74362 1.21494 1.06605 0.97056 0.92116 1.30475 1.13757 1.05387 1.24260 1.04252 0.73264 0.73140 0.76611 1.93566 1.45786 1.70920 1.86428 1.93553 1.53474 1.81972 1.67598 1.57145 1.16595 1.34634 1.76472 1.21795 0.79881 1.01315 1.03969 1.21817 0.90121 0.95320 0.99983 1.21899 0.99166 0.98208 0.81450 1.22251 0.99559 0.94183 0.95645 0.89124 1.20927 0.94552 0.94509 0.86262 1.42645 1.14918 1.67608 1.13769 1.19647 0.96268 1.28471 0.93161 0.90818 1.25583 0.97890 1.01725 1.01757 1.69825 1.15995 1.44492 1.31734 0.85078 0.78328 0.76919 0.79480 1.19021 1.22283 1.21662 0.92685 0.89698 0.94793 0.87975 0.86693 0.85029 0.84561 0.83860 0.84207 0.90033 0.90391 0.90393 0.91317 0.88691 0.90347 0.92116 0.94142 0.96903 0.95231 0.79537 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.98 71.98 0.57 -2.40 16 2 C -0.09 -1.71 3.60 -9.58 -0.03 -1.75 16 3 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.09 1.51 6.40 86.73 0.56 2.07 16 5 N -0.62 -16.10 3.19 -809.40 -2.58 -18.68 16 6 C 0.53 14.70 7.89 87.65 0.69 15.39 16 7 O -0.59 -22.30 16.32 -3.03 -0.05 -22.35 16 8 C -0.13 -2.26 4.64 29.85 0.14 -2.12 16 9 C -0.61 -9.85 5.47 71.98 0.39 -9.45 16 10 S 2.63 42.74 5.41 -56.49 -0.31 42.43 16 11 O -0.98 -20.88 16.57 -127.65 -2.12 -23.00 16 12 O -0.98 -20.42 16.57 -127.65 -2.12 -22.53 16 13 N -1.01 -12.85 3.52 -562.70 -1.98 -14.83 16 14 C 0.08 0.74 10.62 127.77 1.36 2.10 16 15 C 0.07 0.68 10.68 127.77 1.37 2.05 16 16 C 0.12 3.89 6.31 86.53 0.55 4.43 16 17 C -0.10 -2.87 3.00 -9.90 -0.03 -2.90 16 18 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 19 C 0.16 6.44 4.17 86.38 0.36 6.80 16 20 N -0.75 -38.60 5.33 -343.44 -1.83 -40.43 16 21 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 25 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 29 H 0.05 1.27 6.67 -2.39 -0.02 1.25 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.03 0.85 7.61 -2.38 -0.02 0.83 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.10 7.15 -2.38 -0.02 1.08 16 34 H 0.13 1.62 7.91 -2.38 -0.02 1.61 16 35 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.14 2.23 8.10 -2.39 -0.02 2.21 16 37 H 0.14 2.29 8.10 -2.39 -0.02 2.27 16 38 H 0.08 0.90 6.87 -2.39 -0.02 0.89 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 43 H 0.08 0.86 6.91 -2.39 -0.02 0.85 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.76 7.48 -2.39 -0.02 1.74 16 46 H 0.01 0.54 6.85 -2.38 -0.02 0.53 16 47 H 0.03 1.14 7.55 -2.39 -0.02 1.12 16 48 H 0.37 20.50 7.51 -92.71 -0.70 19.80 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -85.85 403.29 -1.20 -87.05 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.24 Total: 26.54 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 7.22 Total: -2.99 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -6.11 Total: -134.46 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -4.28 Total: -67.88 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 16 Polarization: 42.74 SS G_CDS: -0.31 Total: 42.43 kcal Total: -85.85 -1.20 -87.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.779 kcal (2) G-P(sol) polarization free energy of solvation -85.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds