Wall clock time and date at job start Wed Apr 1 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.80126 * 2 1 4 4 C 1.54598 * 110.57290 * 123.29300 * 2 1 3 5 5 N 1.48113 * 103.42522 * 81.17322 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 S 1.81396 * 109.47142 * 179.97438 * 9 8 6 11 11 O 1.42102 * 110.54398 * 291.62251 * 10 9 8 12 12 O 1.42095 * 110.54373 * 68.37538 * 10 9 8 13 13 N 1.65608 * 104.44869 * 179.97438 * 10 9 8 14 14 C 1.46497 * 119.99727 * 89.99966 * 13 10 9 15 15 C 1.46500 * 120.00058 * 270.00051 * 13 10 9 16 16 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 17 17 C 1.54004 * 107.08487 * 334.78016 * 16 5 4 18 18 H 1.09003 * 110.32797 * 120.19357 * 17 16 5 19 19 C 1.52991 * 110.32869 * 242.41494 * 17 16 5 20 20 N 1.46501 * 109.46985 * 293.54194 * 19 17 16 21 21 C 1.36940 * 119.99962 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99775 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47448 * 0.02562 * 25 23 21 27 27 H 1.48491 * 109.47203 * 120.00408 * 25 23 21 28 28 H 1.48503 * 109.47359 * 240.00465 * 25 23 21 29 29 H 1.09007 * 109.47050 * 183.29048 * 1 2 3 30 30 H 1.08994 * 109.47683 * 303.28999 * 1 2 3 31 31 H 1.09003 * 109.46525 * 63.29858 * 1 2 3 32 32 H 1.09004 * 110.62019 * 322.65650 * 4 2 1 33 33 H 1.09004 * 110.54960 * 199.65260 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 37 37 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 38 38 H 1.08996 * 109.47247 * 0.02562 * 14 13 10 39 39 H 1.09002 * 109.46734 * 120.00274 * 14 13 10 40 40 H 1.09006 * 109.46685 * 239.99749 * 14 13 10 41 41 H 1.08993 * 109.47020 * 89.99605 * 15 13 10 42 42 H 1.08997 * 109.47001 * 210.00243 * 15 13 10 43 43 H 1.09001 * 109.46692 * 330.00182 * 15 13 10 44 44 H 1.08998 * 109.91504 * 94.14277 * 16 5 4 45 45 H 1.08998 * 109.91568 * 215.23013 * 16 5 4 46 46 H 1.08996 * 109.47677 * 53.54683 * 19 17 16 47 47 H 1.08998 * 109.47257 * 173.54816 * 19 17 16 48 48 H 0.97004 * 120.00248 * 0.02562 * 20 19 17 49 49 H 0.96993 * 120.00144 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0733 -0.7945 1.2098 5 7 1.9871 -2.2038 0.7624 6 6 1.6220 -3.2695 1.5023 7 8 1.5903 -4.3736 1.0012 8 6 1.2591 -3.0903 2.9539 9 6 0.8923 -4.4468 3.5592 10 16 0.4562 -4.2311 5.3067 11 8 1.6017 -3.8684 6.0654 12 8 -0.7629 -3.5118 5.4314 13 7 0.0847 -5.7573 5.8313 14 6 1.1330 -6.6157 6.3885 15 6 -1.2922 -6.2490 5.7381 16 6 2.3763 -2.2015 -0.6601 17 6 2.0776 -0.7937 -1.2086 18 1 2.9911 -0.3314 -1.5827 19 6 1.0254 -0.8673 -2.3168 20 7 1.5804 -1.5795 -3.4706 21 6 0.8157 -1.7695 -4.5906 22 1 -0.1964 -1.3940 -4.6235 23 6 1.3415 -2.4447 -5.6836 24 7 2.5747 -2.9028 -5.6432 25 14 0.2986 -2.7033 -7.2116 26 1 -1.0411 -2.0968 -7.0052 27 1 0.9585 -2.0600 -8.3760 28 1 0.1494 -4.1582 -7.4688 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3634 0.5640 0.8589 31 1 -0.3632 0.4618 -0.9181 32 1 1.4488 -0.6309 2.0882 33 1 3.1076 -0.5188 1.4154 34 1 2.1092 -2.6704 3.4918 35 1 0.4080 -2.4142 3.0349 36 1 0.0423 -4.8667 3.0213 37 1 1.7434 -5.1229 3.4782 38 1 2.0835 -6.0825 6.3769 39 1 0.8780 -6.8810 7.4146 40 1 1.2170 -7.5222 5.7890 41 1 -1.4379 -6.7411 4.7766 42 1 -1.4791 -6.9604 6.5425 43 1 -1.9838 -5.4112 5.8260 44 1 3.4403 -2.4185 -0.7543 45 1 1.7961 -2.9461 -1.2051 46 1 0.1475 -1.3988 -1.9497 47 1 0.7408 0.1416 -2.6153 48 1 2.4893 -1.9171 -3.4409 49 1 2.9419 -3.3749 -6.4068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733560224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:21 Heat of formation + Delta-G solvation = -86.645032 kcal Electronic energy + Delta-G solvation = -29196.184589 eV Core-core repulsion = 25093.191455 eV Total energy + Delta-G solvation = -4102.993134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.27357 -38.17789 -37.55735 -36.66661 -36.23167 -34.67590 -33.49790 -32.70477 -31.17707 -29.17904 -28.52815 -27.04846 -25.99528 -25.14198 -24.39665 -22.97205 -21.76983 -19.37732 -19.28000 -19.08416 -18.20511 -17.46071 -16.98613 -16.90210 -16.48363 -16.18767 -15.54242 -15.41233 -14.87364 -14.81683 -14.68728 -13.96538 -13.66906 -13.60545 -13.40955 -13.33050 -13.08727 -13.02620 -12.84789 -12.80750 -12.76747 -12.46758 -12.21354 -12.02109 -11.97961 -11.97400 -11.84485 -11.77406 -11.63421 -11.22117 -11.03976 -10.86960 -10.59014 -10.48784 -10.24510 -9.95503 -9.89602 -9.68414 -9.51518 -8.88063 -8.62426 -6.92143 -5.76339 -3.05126 -0.19153 2.16831 2.56504 2.89988 3.42179 3.43762 3.49219 3.51523 3.75951 3.99122 4.24502 4.38013 4.40138 4.49688 4.60529 4.80297 4.87172 4.90518 4.95219 4.96973 5.10300 5.14927 5.30142 5.34370 5.36818 5.38074 5.41793 5.43348 5.49893 5.55509 5.59202 5.75757 5.79881 5.99979 6.01383 6.04462 6.12583 6.24630 6.30574 6.39401 6.47460 6.70774 6.85645 7.54058 7.70622 8.11798 8.42373 9.53624 10.10719 10.44938 11.46611 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002219 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.188881 B =12613.688314 C =13369.876018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.537 3.463 7 O -0.533 6.533 8 C -0.130 4.130 9 C -0.612 4.612 10 S 2.610 3.390 11 O -0.953 6.953 12 O -0.951 6.951 13 N -1.007 6.007 14 C 0.084 3.916 15 C 0.081 3.919 16 C 0.112 3.888 17 C -0.104 4.104 18 H 0.086 0.914 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.024 0.976 47 H 0.022 0.978 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -1.265 26.895 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.026 4.026 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.410 6.410 8 C -0.172 4.172 9 C -0.741 4.741 10 S 2.703 3.297 11 O -0.943 6.943 12 O -0.942 6.942 13 N -0.846 5.846 14 C -0.061 4.061 15 C -0.065 4.065 16 C -0.010 4.010 17 C -0.123 4.123 18 H 0.104 0.896 19 C 0.034 3.966 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.063 -1.216 27.110 27.309 hybrid contribution -0.049 -0.796 -1.567 1.758 sum -3.112 -2.012 25.542 25.810 Atomic orbital electron populations 1.21845 0.94226 1.02188 1.02035 1.22202 0.96765 0.99013 0.93857 0.89218 1.22666 1.01281 0.80749 0.97899 1.48810 1.66565 1.07218 1.12459 1.19701 0.77216 0.83487 0.87265 1.90744 1.53070 1.24159 1.72988 1.21331 1.04532 0.95869 0.95435 1.30477 1.13556 1.05480 1.24569 1.05089 0.74404 0.73085 0.77121 1.93598 1.52450 1.81041 1.67188 1.93592 1.44788 1.69805 1.85971 1.57252 1.15541 1.34920 1.76855 1.21600 0.90288 0.95060 0.99156 1.21630 0.80987 1.01363 1.02486 1.22191 1.00391 0.98807 0.79630 1.22347 1.00555 0.94044 0.95395 0.89566 1.20795 0.93669 0.95446 0.86657 1.42410 1.15544 1.67164 1.12684 1.19247 0.95962 1.29695 0.92069 0.91185 1.24743 0.96560 1.01172 0.98520 1.69663 1.14269 1.43245 1.30953 0.86122 0.79301 0.77473 0.83326 1.20581 1.21880 1.21868 0.92420 0.93007 0.91320 0.90215 0.90529 0.87472 0.87406 0.84082 0.84189 0.89526 0.91621 0.91940 0.92445 0.90528 0.89610 0.91683 0.89060 0.95800 0.95985 0.78326 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.97 37.16 0.30 -1.37 16 2 C -0.10 -1.10 3.60 -88.93 -0.32 -1.42 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.10 0.95 6.37 -2.32 -0.01 0.94 16 5 N -0.62 -8.34 3.19 -169.98 -0.54 -8.88 16 6 C 0.54 7.59 7.89 -10.98 -0.09 7.50 16 7 O -0.53 -9.74 16.32 5.55 0.09 -9.65 16 8 C -0.13 -1.25 4.64 -27.88 -0.13 -1.38 16 9 C -0.61 -5.28 5.47 37.16 0.20 -5.08 16 10 S 2.61 23.01 5.41 -107.50 -0.58 22.42 16 11 O -0.95 -10.65 16.57 -57.54 -0.95 -11.61 16 12 O -0.95 -10.84 16.57 -57.54 -0.95 -11.80 16 13 N -1.01 -7.14 3.52 -129.21 -0.45 -7.59 16 14 C 0.08 0.46 10.62 59.85 0.64 1.10 16 15 C 0.08 0.46 10.68 59.85 0.64 1.10 16 16 C 0.11 1.81 6.31 -2.98 -0.02 1.80 16 17 C -0.10 -1.57 3.00 -89.25 -0.27 -1.83 16 18 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.14 4.18 -4.05 -0.02 3.12 16 20 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H 0.06 0.75 7.61 -51.92 -0.40 0.36 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.85 6.67 -51.93 -0.35 0.50 16 32 H 0.08 0.60 7.14 -51.93 -0.37 0.22 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 36 H 0.14 1.19 8.10 -51.92 -0.42 0.77 16 37 H 0.14 1.13 8.10 -51.92 -0.42 0.71 16 38 H 0.09 0.49 6.87 -51.93 -0.36 0.14 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 43 H 0.09 0.54 6.91 -51.93 -0.36 0.19 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.85 7.49 -51.93 -0.39 1.46 16 46 H 0.02 0.49 6.85 -51.93 -0.36 0.13 16 47 H 0.02 0.43 7.55 -51.93 -0.39 0.04 16 48 H 0.38 10.08 7.51 -40.82 -0.31 9.78 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -38.02 403.25 -9.56 -47.57 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.29 Total: 5.12 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.67 Total: -2.88 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.59 Total: -62.88 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.82 Total: -33.06 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 23.01 SS G_CDS: -0.58 Total: 22.42 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.02 -9.56 -47.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.073 kcal (2) G-P(sol) polarization free energy of solvation -38.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds