Wall clock time and date at job start Wed Apr 1 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.80126 * 2 1 4 4 C 1.54598 * 110.57290 * 123.29300 * 2 1 3 5 5 N 1.48113 * 103.42522 * 81.17322 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 S 1.81396 * 109.47142 * 179.97438 * 9 8 6 11 11 O 1.42102 * 110.54398 * 291.62251 * 10 9 8 12 12 O 1.42095 * 110.54373 * 68.37538 * 10 9 8 13 13 N 1.65608 * 104.44869 * 179.97438 * 10 9 8 14 14 C 1.46497 * 119.99727 * 89.99966 * 13 10 9 15 15 C 1.46500 * 120.00058 * 270.00051 * 13 10 9 16 16 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 17 17 C 1.54004 * 107.08487 * 334.78016 * 16 5 4 18 18 H 1.09003 * 110.32797 * 120.19357 * 17 16 5 19 19 C 1.52991 * 110.32869 * 242.41494 * 17 16 5 20 20 N 1.46501 * 109.46985 * 293.54194 * 19 17 16 21 21 C 1.36940 * 119.99962 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99982 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99775 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47448 * 0.02562 * 25 23 21 27 27 H 1.48491 * 109.47203 * 120.00408 * 25 23 21 28 28 H 1.48503 * 109.47359 * 240.00465 * 25 23 21 29 29 H 1.09007 * 109.47050 * 183.29048 * 1 2 3 30 30 H 1.08994 * 109.47683 * 303.28999 * 1 2 3 31 31 H 1.09003 * 109.46525 * 63.29858 * 1 2 3 32 32 H 1.09004 * 110.62019 * 322.65650 * 4 2 1 33 33 H 1.09004 * 110.54960 * 199.65260 * 4 2 1 34 34 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 35 35 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 36 36 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 37 37 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 38 38 H 1.08996 * 109.47247 * 0.02562 * 14 13 10 39 39 H 1.09002 * 109.46734 * 120.00274 * 14 13 10 40 40 H 1.09006 * 109.46685 * 239.99749 * 14 13 10 41 41 H 1.08993 * 109.47020 * 89.99605 * 15 13 10 42 42 H 1.08997 * 109.47001 * 210.00243 * 15 13 10 43 43 H 1.09001 * 109.46692 * 330.00182 * 15 13 10 44 44 H 1.08998 * 109.91504 * 94.14277 * 16 5 4 45 45 H 1.08998 * 109.91568 * 215.23013 * 16 5 4 46 46 H 1.08996 * 109.47677 * 53.54683 * 19 17 16 47 47 H 1.08998 * 109.47257 * 173.54816 * 19 17 16 48 48 H 0.97004 * 120.00248 * 0.02562 * 20 19 17 49 49 H 0.96993 * 120.00144 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0733 -0.7945 1.2098 5 7 1.9871 -2.2038 0.7624 6 6 1.6220 -3.2695 1.5023 7 8 1.5903 -4.3736 1.0012 8 6 1.2591 -3.0903 2.9539 9 6 0.8923 -4.4468 3.5592 10 16 0.4562 -4.2311 5.3067 11 8 1.6017 -3.8684 6.0654 12 8 -0.7629 -3.5118 5.4314 13 7 0.0847 -5.7573 5.8313 14 6 1.1330 -6.6157 6.3885 15 6 -1.2922 -6.2490 5.7381 16 6 2.3763 -2.2015 -0.6601 17 6 2.0776 -0.7937 -1.2086 18 1 2.9911 -0.3314 -1.5827 19 6 1.0254 -0.8673 -2.3168 20 7 1.5804 -1.5795 -3.4706 21 6 0.8157 -1.7695 -4.5906 22 1 -0.1964 -1.3940 -4.6235 23 6 1.3415 -2.4447 -5.6836 24 7 2.5747 -2.9028 -5.6432 25 14 0.2986 -2.7033 -7.2116 26 1 -1.0411 -2.0968 -7.0052 27 1 0.9585 -2.0600 -8.3760 28 1 0.1494 -4.1582 -7.4688 29 1 -0.3633 -1.0260 0.0590 30 1 -0.3634 0.5640 0.8589 31 1 -0.3632 0.4618 -0.9181 32 1 1.4488 -0.6309 2.0882 33 1 3.1076 -0.5188 1.4154 34 1 2.1092 -2.6704 3.4918 35 1 0.4080 -2.4142 3.0349 36 1 0.0423 -4.8667 3.0213 37 1 1.7434 -5.1229 3.4782 38 1 2.0835 -6.0825 6.3769 39 1 0.8780 -6.8810 7.4146 40 1 1.2170 -7.5222 5.7890 41 1 -1.4379 -6.7411 4.7766 42 1 -1.4791 -6.9604 6.5425 43 1 -1.9838 -5.4112 5.8260 44 1 3.4403 -2.4185 -0.7543 45 1 1.7961 -2.9461 -1.2051 46 1 0.1475 -1.3988 -1.9497 47 1 0.7408 0.1416 -2.6153 48 1 2.4893 -1.9171 -3.4409 49 1 2.9419 -3.3749 -6.4068 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733560224.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:20 Heat of formation + Delta-G solvation = -115.929431 kcal Electronic energy + Delta-G solvation = -29197.454456 eV Core-core repulsion = 25093.191455 eV Total energy + Delta-G solvation = -4104.263001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37225 -39.34809 -38.33474 -37.28370 -36.90537 -36.45333 -34.48680 -33.97792 -32.81733 -30.63799 -28.95511 -28.18000 -27.09998 -26.09924 -25.43381 -24.48665 -23.05685 -20.38215 -20.36583 -19.95237 -19.20224 -18.77649 -18.23163 -17.73886 -17.34436 -17.07441 -16.77084 -16.47850 -16.26666 -15.53584 -15.42309 -15.38775 -15.30692 -14.77706 -14.53248 -14.21893 -14.09393 -13.97003 -13.71103 -13.63135 -13.58811 -13.31353 -13.23113 -13.18015 -13.08958 -12.90762 -12.77669 -12.73530 -12.57705 -12.56693 -12.54365 -12.14721 -12.00221 -11.91269 -11.64375 -11.55231 -11.37260 -11.02858 -10.94860 -10.02510 -9.75416 -9.01524 -7.97992 -5.26505 -0.88055 1.44061 1.45375 1.50095 1.54978 1.55210 1.90162 2.53257 2.72173 3.08375 3.22374 3.35275 3.42584 3.54237 3.71959 3.75052 3.81781 3.87434 4.18990 4.22353 4.29919 4.34077 4.39119 4.51536 4.57252 4.58101 4.61789 4.67186 4.74653 4.77932 4.78927 4.89131 4.95400 4.96495 4.99240 5.01531 5.04294 5.06927 5.18561 5.27413 5.35903 5.47277 5.53195 5.54875 6.24931 6.50420 7.03619 7.30773 8.07351 8.29479 9.25880 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002219 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.188881 B =12613.688314 C =13369.876018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.122 0.878 4 C 0.095 3.905 5 N -0.617 5.617 6 C 0.528 3.472 7 O -0.587 6.587 8 C -0.132 4.132 9 C -0.609 4.609 10 S 2.634 3.366 11 O -0.975 6.975 12 O -0.977 6.977 13 N -1.009 6.009 14 C 0.075 3.925 15 C 0.072 3.928 16 C 0.116 3.884 17 C -0.097 4.097 18 H 0.091 0.909 19 C 0.164 3.836 20 N -0.747 5.747 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.973 3.027 26 H -0.266 1.266 27 H -0.290 1.290 28 H -0.295 1.295 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.013 0.987 47 H 0.030 0.970 48 H 0.373 0.627 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 0.140 28.984 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.140 0.860 4 C -0.026 4.026 5 N -0.350 5.350 6 C 0.317 3.683 7 O -0.468 6.468 8 C -0.173 4.173 9 C -0.739 4.739 10 S 2.727 3.273 11 O -0.966 6.966 12 O -0.967 6.967 13 N -0.848 5.848 14 C -0.069 4.069 15 C -0.072 4.072 16 C -0.007 4.007 17 C -0.116 4.116 18 H 0.109 0.891 19 C 0.038 3.962 20 N -0.389 5.389 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.217 1.217 28 H -0.223 1.223 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.048 0.952 48 H 0.205 0.795 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.694 0.252 29.247 29.480 hybrid contribution 0.103 -1.258 -2.172 2.512 sum -3.591 -1.007 27.075 27.331 Atomic orbital electron populations 1.21841 0.94487 1.01073 1.02867 1.22268 0.96469 1.00170 0.91992 0.85987 1.23013 1.03618 0.77698 0.98286 1.48926 1.65856 1.09066 1.11123 1.20567 0.76098 0.82729 0.88899 1.90715 1.55344 1.26328 1.74405 1.21496 1.06653 0.97048 0.92072 1.30476 1.13738 1.05376 1.24291 1.04252 0.73254 0.73135 0.76627 1.93564 1.53248 1.81875 1.67872 1.93555 1.45781 1.71068 1.86337 1.57146 1.16464 1.34587 1.76649 1.21803 0.89677 0.95315 1.00153 1.21809 0.79986 1.01528 1.03926 1.21904 0.99182 0.98189 0.81443 1.22246 0.99561 0.94166 0.95648 0.89110 1.20920 0.94550 0.94500 0.86266 1.42644 1.15011 1.67636 1.13653 1.19648 0.96280 1.28646 0.92982 0.90820 1.25582 0.97874 1.01752 1.01736 1.69818 1.15990 1.44576 1.31659 0.85079 0.78323 0.76916 0.79494 1.19026 1.21670 1.22275 0.94803 0.89693 0.92697 0.86710 0.87978 0.84548 0.85044 0.84217 0.83846 0.89888 0.90429 0.90370 0.91408 0.88632 0.90448 0.92091 0.94155 0.96898 0.95240 0.79533 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.97 71.98 0.57 -2.41 16 2 C -0.09 -1.72 3.60 -9.70 -0.03 -1.75 16 3 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.09 1.51 6.37 86.61 0.55 2.07 16 5 N -0.62 -16.10 3.19 -810.08 -2.59 -18.68 16 6 C 0.53 14.69 7.89 87.66 0.69 15.39 16 7 O -0.59 -22.29 16.32 -3.04 -0.05 -22.34 16 8 C -0.13 -2.26 4.64 29.85 0.14 -2.12 16 9 C -0.61 -9.84 5.47 71.98 0.39 -9.45 16 10 S 2.63 42.72 5.41 -56.49 -0.31 42.41 16 11 O -0.98 -20.31 16.57 -127.65 -2.12 -22.42 16 12 O -0.98 -20.98 16.57 -127.65 -2.12 -23.10 16 13 N -1.01 -12.85 3.52 -562.70 -1.98 -14.82 16 14 C 0.08 0.70 10.62 127.77 1.36 2.06 16 15 C 0.07 0.72 10.68 127.77 1.37 2.08 16 16 C 0.12 3.89 6.31 86.53 0.55 4.43 16 17 C -0.10 -2.86 3.00 -9.91 -0.03 -2.89 16 18 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 19 C 0.16 6.44 4.18 86.38 0.36 6.80 16 20 N -0.75 -38.61 5.33 -343.47 -1.83 -40.44 16 21 C -0.24 -13.96 9.99 84.03 0.84 -13.12 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 24 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 25 Si 0.97 47.28 29.55 68.60 2.03 49.30 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H 0.03 0.84 7.61 -2.38 -0.02 0.83 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.27 6.67 -2.39 -0.02 1.25 16 32 H 0.11 1.10 7.14 -2.38 -0.02 1.08 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.14 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.13 1.63 7.90 -2.39 -0.02 1.61 16 36 H 0.14 2.30 8.10 -2.39 -0.02 2.28 16 37 H 0.14 2.21 8.10 -2.39 -0.02 2.19 16 38 H 0.08 0.85 6.87 -2.39 -0.02 0.83 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.48 8.14 -2.38 -0.02 0.47 16 41 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 43 H 0.08 0.91 6.91 -2.39 -0.02 0.89 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.04 1.75 7.49 -2.39 -0.02 1.73 16 46 H 0.01 0.55 6.85 -2.39 -0.02 0.53 16 47 H 0.03 1.14 7.55 -2.39 -0.02 1.12 16 48 H 0.37 20.50 7.51 -92.71 -0.70 19.80 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -85.85 403.25 -1.21 -87.06 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.24 Total: 26.53 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 7.22 Total: -2.99 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -6.11 Total: -134.45 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -4.28 Total: -67.86 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 16 Polarization: 42.72 SS G_CDS: -0.31 Total: 42.41 kcal Total: -85.85 -1.21 -87.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733560224.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.871 kcal (2) G-P(sol) polarization free energy of solvation -85.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds