Wall clock time and date at job start Wed Apr 1 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 C 1.53006 * 109.46885 * 120.00544 * 2 1 3 5 5 H 1.09001 * 109.46869 * 185.19529 * 4 2 1 6 6 N 1.46495 * 109.47364 * 65.19429 * 4 2 1 7 7 S 1.65599 * 120.00151 * 95.00083 * 6 4 2 8 8 C 1.81403 * 104.44717 * 64.99837 * 7 6 4 9 9 O 1.42097 * 104.27559 * 308.93032 * 7 6 4 10 10 O 1.42097 * 104.27847 * 181.06926 * 7 6 4 11 11 C 1.50700 * 109.46854 * 305.19218 * 4 2 1 12 12 O 1.21279 * 120.00071 * 93.26436 * 11 4 2 13 13 N 1.34778 * 120.00192 * 273.27015 * 11 4 2 14 14 C 1.46502 * 120.00081 * 184.42699 * 13 11 4 15 15 H 1.08995 * 109.47014 * 324.99832 * 14 13 11 16 16 C 1.52991 * 109.47100 * 84.99971 * 14 13 11 17 17 C 1.52996 * 109.47056 * 204.99855 * 14 13 11 18 18 C 1.53943 * 113.74436 * 157.44136 * 17 14 13 19 19 N 1.47808 * 86.04102 * 222.08496 * 18 17 14 20 20 C 1.36941 * 134.45743 * 204.64063 * 19 18 17 21 21 H 1.07999 * 119.99626 * 179.86609 * 20 19 18 22 22 C 1.38811 * 119.99603 * 359.87126 * 20 19 18 23 23 N 1.31616 * 120.00307 * 359.97438 * 22 20 19 24 24 Si 1.86811 * 119.99576 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46859 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46757 * 119.99863 * 24 22 20 27 27 H 1.48503 * 109.46887 * 239.99894 * 24 22 20 28 28 C 1.47579 * 91.05066 * 24.54824 * 19 18 17 29 29 H 1.08994 * 109.47504 * 300.00001 * 1 2 3 30 30 H 1.09001 * 109.47289 * 59.99990 * 1 2 3 31 31 H 1.09004 * 109.47630 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46988 * 240.00179 * 2 1 3 33 33 H 1.08998 * 109.47018 * 180.78506 * 3 2 1 34 34 H 1.09001 * 109.47255 * 300.78693 * 3 2 1 35 35 H 1.09001 * 109.46965 * 60.78466 * 3 2 1 36 36 H 0.96998 * 120.00064 * 274.99974 * 6 4 2 37 37 H 1.09001 * 109.47040 * 299.99728 * 8 7 6 38 38 H 1.09004 * 109.47081 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47442 * 60.00339 * 8 7 6 40 40 H 0.96998 * 119.99776 * 4.42677 * 13 11 4 41 41 H 1.09000 * 109.47284 * 184.63145 * 16 14 13 42 42 H 1.09000 * 109.47436 * 304.63145 * 16 14 13 43 43 H 1.09000 * 109.47461 * 64.63224 * 16 14 13 44 44 H 1.09007 * 112.94751 * 289.03592 * 17 14 13 45 45 H 1.09006 * 113.76844 * 336.35243 * 18 17 14 46 46 H 1.08998 * 113.76922 * 107.74161 * 18 17 14 47 47 H 0.97006 * 119.99728 * 179.97438 * 23 22 20 48 48 H 1.08995 * 113.76768 * 221.15284 * 28 19 18 49 49 H 1.09000 * 113.87081 * 89.76969 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 3.1259 -0.6415 1.2970 6 7 1.6564 -2.1339 1.1883 7 16 2.7180 -3.2551 0.5899 8 6 4.0962 -3.2481 1.7694 9 8 3.1284 -2.7172 -0.6597 10 8 2.0073 -4.4836 0.6607 11 6 1.4353 -0.0892 2.4763 12 8 0.4137 -0.5397 2.9498 13 7 2.0298 0.9770 3.0476 14 6 1.4974 1.5317 4.2947 15 1 0.4109 1.4447 4.2963 16 6 2.0728 0.7588 5.4831 17 6 1.8912 3.0059 4.4062 18 6 0.9763 3.8232 5.3361 19 7 1.0441 4.8800 4.3050 20 6 0.8893 6.2407 4.3146 21 1 0.9942 6.8024 3.3982 22 6 0.5978 6.8976 5.5021 23 7 0.4695 6.2129 6.6187 24 14 0.3874 8.7538 5.5152 25 1 0.5808 9.2836 4.1415 26 1 -0.9781 9.0938 5.9897 27 1 1.3928 9.3595 6.4250 28 6 1.3476 3.8809 3.2621 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4424 -0.0141 34 1 1.6652 1.9604 -0.8828 35 1 1.6882 1.9522 0.8970 36 1 0.7805 -2.4125 1.4984 37 1 4.5360 -2.2515 1.8084 38 1 4.8517 -3.9660 1.4497 39 1 3.7294 -3.5224 2.7585 40 1 2.8101 1.3771 2.6330 41 1 1.6147 1.1165 6.4052 42 1 1.8628 -0.3038 5.3615 43 1 3.1508 0.9131 5.5293 44 1 2.9543 3.1483 4.6005 45 1 -0.0182 3.3948 5.4615 46 1 1.4441 4.0991 6.2812 47 1 0.2661 6.6721 7.4486 48 1 2.1114 4.2029 2.5543 49 1 0.4636 3.4687 2.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734124936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:39 Heat of formation + Delta-G solvation = -60.893387 kcal Electronic energy + Delta-G solvation = -30237.254523 eV Core-core repulsion = 26135.378065 eV Total energy + Delta-G solvation = -4101.876459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52020 -38.38382 -37.47889 -36.58156 -36.26309 -34.96584 -33.27419 -32.20571 -30.68827 -29.91644 -27.55357 -27.27157 -26.83274 -24.78603 -24.06633 -22.16913 -20.84387 -20.24649 -19.68985 -19.16931 -18.32962 -17.38346 -16.76876 -16.61744 -16.33685 -15.96461 -15.68852 -15.17975 -14.82387 -14.52656 -14.14290 -13.92548 -13.78090 -13.67988 -13.58040 -13.51704 -13.16472 -12.64198 -12.49655 -12.44858 -12.35838 -12.29921 -12.21378 -12.12804 -11.79073 -11.66158 -11.45134 -11.42627 -11.26319 -11.19883 -11.06399 -10.93212 -10.70744 -10.40109 -10.22445 -9.98840 -9.85644 -9.55207 -9.42482 -8.94470 -8.83031 -6.91193 -5.80379 -3.12478 -0.13827 2.17986 2.55833 3.10150 3.36348 3.41781 3.44283 3.45447 3.78454 4.20425 4.31754 4.41720 4.47663 4.52338 4.57086 4.85219 4.95603 5.05575 5.10704 5.21531 5.33918 5.36800 5.45317 5.48392 5.55649 5.59644 5.71461 5.72813 5.80986 5.91710 5.95077 5.98300 6.13586 6.18767 6.24434 6.29012 6.35963 6.50455 6.57088 6.64674 6.72047 7.18274 7.31315 7.47711 7.52688 7.94712 8.14353 9.01315 9.67728 10.56056 11.36861 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.002438 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.923641 B =11482.658941 C =12056.068134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.162 4.162 4 C 0.140 3.860 5 H 0.100 0.900 6 N -1.101 6.101 7 S 2.614 3.386 8 C -0.677 4.677 9 O -0.952 6.952 10 O -0.956 6.956 11 C 0.514 3.486 12 O -0.529 6.529 13 N -0.716 5.716 14 C 0.148 3.852 15 H 0.090 0.910 16 C -0.157 4.157 17 C -0.148 4.148 18 C 0.176 3.824 19 N -0.612 5.612 20 C -0.223 4.223 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.126 3.874 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.428 0.572 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.074 0.926 47 H 0.253 0.747 48 H 0.040 0.960 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -18.439 -10.355 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.220 4.220 4 C 0.028 3.972 5 H 0.117 0.883 6 N -0.861 5.861 7 S 2.705 3.295 8 C -0.827 4.827 9 O -0.942 6.942 10 O -0.946 6.946 11 C 0.297 3.703 12 O -0.405 6.405 13 N -0.367 5.367 14 C 0.044 3.956 15 H 0.108 0.892 16 C -0.216 4.216 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.338 5.338 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.000 4.000 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.265 0.735 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.234 0.766 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.087 -18.908 -10.676 23.171 hybrid contribution 0.151 1.376 0.695 1.549 sum 8.238 -17.532 -9.981 21.791 Atomic orbital electron populations 1.21848 0.93992 1.02321 1.02499 1.21580 0.97600 0.96665 0.96776 1.22033 1.01214 0.95071 1.03667 1.20814 0.99492 0.81932 0.94923 0.88266 1.55482 1.31051 1.16655 1.82914 1.04810 0.75688 0.73249 0.75745 1.30570 1.21107 1.11644 1.19333 1.93630 1.83432 1.78769 1.38329 1.93634 1.70241 1.43442 1.87295 1.20422 0.84829 0.80791 0.84247 1.90703 1.23209 1.62584 1.64014 1.46265 1.32901 1.31331 1.26193 1.21161 0.99629 0.92828 0.81999 0.89209 1.22117 1.01026 0.99838 0.98579 1.23884 1.01266 0.90318 1.01341 1.22232 0.94269 0.84483 0.94044 1.45986 1.82944 1.00957 1.03894 1.19061 1.41429 0.80065 0.94486 0.90254 1.24781 1.02098 0.98062 0.95523 1.69815 1.54612 1.33951 0.98425 0.86063 0.77426 0.84978 0.77384 1.20480 1.21732 1.21699 1.22523 0.96255 0.88886 0.92319 0.91892 0.92336 0.92338 0.88329 0.92111 0.91444 0.91384 0.73458 0.85380 0.85163 0.84998 0.76595 0.91073 0.92974 0.92694 0.89296 0.95453 0.90733 0.93671 0.94145 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.63 37.15 0.32 -1.22 16 2 C -0.11 -0.95 2.90 -90.62 -0.26 -1.21 16 3 C -0.16 -1.34 8.64 37.16 0.32 -1.02 16 4 C 0.14 1.17 2.25 -69.08 -0.16 1.01 16 5 H 0.10 0.50 7.15 -51.93 -0.37 0.13 16 6 N -1.10 -8.98 4.81 -5.88 -0.03 -9.01 16 7 S 2.61 19.79 6.02 -107.50 -0.65 19.15 16 8 C -0.68 -2.82 10.78 101.05 1.09 -1.73 16 9 O -0.95 -9.72 17.05 -57.54 -0.98 -10.70 16 10 O -0.96 -10.71 18.08 -57.54 -1.04 -11.75 16 11 C 0.51 5.67 5.26 -10.98 -0.06 5.61 16 12 O -0.53 -7.64 15.00 5.56 0.08 -7.56 16 13 N -0.72 -7.55 3.89 -53.81 -0.21 -7.76 16 14 C 0.15 2.00 2.38 -67.94 -0.16 1.84 16 15 H 0.09 1.45 7.33 -51.93 -0.38 1.07 16 16 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 17 C -0.15 -2.42 3.36 -89.69 -0.30 -2.72 16 18 C 0.18 3.88 7.08 -2.84 -0.02 3.86 16 19 N -0.61 -15.08 3.70 -177.69 -0.66 -15.73 16 20 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -26.79 11.39 55.49 0.63 -26.15 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.13 2.36 8.28 -2.97 -0.02 2.34 16 29 H 0.06 0.77 6.67 -51.93 -0.35 0.42 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 7.64 -51.93 -0.40 0.20 16 32 H 0.10 0.90 7.36 -51.93 -0.38 0.51 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.64 6.26 -51.93 -0.32 0.32 16 36 H 0.43 3.77 7.94 -34.47 -0.27 3.49 16 37 H 0.13 0.34 7.44 -51.92 -0.39 -0.04 16 38 H 0.13 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 3.29 7.82 -40.82 -0.32 2.98 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 46 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -36.42 402.44 -9.13 -45.55 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.16 Total: 2.50 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 0.84 Total: -1.39 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.26 Total: -58.66 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.94 Total: -30.01 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 19.79 SS G_CDS: -0.65 Total: 19.15 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.42 -9.13 -45.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734124936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.343 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds