Wall clock time and date at job start Wed Apr 1 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47279 * 2 1 4 4 C 1.53006 * 109.46885 * 120.00544 * 2 1 3 5 5 H 1.09001 * 109.46869 * 185.19529 * 4 2 1 6 6 N 1.46495 * 109.47364 * 65.19429 * 4 2 1 7 7 S 1.65599 * 120.00151 * 95.00083 * 6 4 2 8 8 C 1.81403 * 104.44717 * 64.99837 * 7 6 4 9 9 O 1.42097 * 104.27559 * 308.93032 * 7 6 4 10 10 O 1.42097 * 104.27847 * 181.06926 * 7 6 4 11 11 C 1.50700 * 109.46854 * 305.19218 * 4 2 1 12 12 O 1.21279 * 120.00071 * 93.26436 * 11 4 2 13 13 N 1.34778 * 120.00192 * 273.27015 * 11 4 2 14 14 C 1.46502 * 120.00081 * 184.42699 * 13 11 4 15 15 H 1.08995 * 109.47014 * 324.99832 * 14 13 11 16 16 C 1.52991 * 109.47100 * 84.99971 * 14 13 11 17 17 C 1.52996 * 109.47056 * 204.99855 * 14 13 11 18 18 C 1.53943 * 113.74436 * 157.44136 * 17 14 13 19 19 N 1.47808 * 86.04102 * 222.08496 * 18 17 14 20 20 C 1.36941 * 134.45743 * 204.64063 * 19 18 17 21 21 H 1.07999 * 119.99626 * 179.86609 * 20 19 18 22 22 C 1.38811 * 119.99603 * 359.87126 * 20 19 18 23 23 N 1.31616 * 120.00307 * 359.97438 * 22 20 19 24 24 Si 1.86811 * 119.99576 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46859 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46757 * 119.99863 * 24 22 20 27 27 H 1.48503 * 109.46887 * 239.99894 * 24 22 20 28 28 C 1.47579 * 91.05066 * 24.54824 * 19 18 17 29 29 H 1.08994 * 109.47504 * 300.00001 * 1 2 3 30 30 H 1.09001 * 109.47289 * 59.99990 * 1 2 3 31 31 H 1.09004 * 109.47630 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46988 * 240.00179 * 2 1 3 33 33 H 1.08998 * 109.47018 * 180.78506 * 3 2 1 34 34 H 1.09001 * 109.47255 * 300.78693 * 3 2 1 35 35 H 1.09001 * 109.46965 * 60.78466 * 3 2 1 36 36 H 0.96998 * 120.00064 * 274.99974 * 6 4 2 37 37 H 1.09001 * 109.47040 * 299.99728 * 8 7 6 38 38 H 1.09004 * 109.47081 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.47442 * 60.00339 * 8 7 6 40 40 H 0.96998 * 119.99776 * 4.42677 * 13 11 4 41 41 H 1.09000 * 109.47284 * 184.63145 * 16 14 13 42 42 H 1.09000 * 109.47436 * 304.63145 * 16 14 13 43 43 H 1.09000 * 109.47461 * 64.63224 * 16 14 13 44 44 H 1.09007 * 112.94751 * 289.03592 * 17 14 13 45 45 H 1.09006 * 113.76844 * 336.35243 * 18 17 14 46 46 H 1.08998 * 113.76922 * 107.74161 * 18 17 14 47 47 H 0.97006 * 119.99728 * 179.97438 * 23 22 20 48 48 H 1.08995 * 113.76768 * 221.15284 * 28 19 18 49 49 H 1.09000 * 113.87081 * 89.76969 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 3.1259 -0.6415 1.2970 6 7 1.6564 -2.1339 1.1883 7 16 2.7180 -3.2551 0.5899 8 6 4.0962 -3.2481 1.7694 9 8 3.1284 -2.7172 -0.6597 10 8 2.0073 -4.4836 0.6607 11 6 1.4353 -0.0892 2.4763 12 8 0.4137 -0.5397 2.9498 13 7 2.0298 0.9770 3.0476 14 6 1.4974 1.5317 4.2947 15 1 0.4109 1.4447 4.2963 16 6 2.0728 0.7588 5.4831 17 6 1.8912 3.0059 4.4062 18 6 0.9763 3.8232 5.3361 19 7 1.0441 4.8800 4.3050 20 6 0.8893 6.2407 4.3146 21 1 0.9942 6.8024 3.3982 22 6 0.5978 6.8976 5.5021 23 7 0.4695 6.2129 6.6187 24 14 0.3874 8.7538 5.5152 25 1 0.5808 9.2836 4.1415 26 1 -0.9781 9.0938 5.9897 27 1 1.3928 9.3595 6.4250 28 6 1.3476 3.8809 3.2621 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4424 -0.0141 34 1 1.6652 1.9604 -0.8828 35 1 1.6882 1.9522 0.8970 36 1 0.7805 -2.4125 1.4984 37 1 4.5360 -2.2515 1.8084 38 1 4.8517 -3.9660 1.4497 39 1 3.7294 -3.5224 2.7585 40 1 2.8101 1.3771 2.6330 41 1 1.6147 1.1165 6.4052 42 1 1.8628 -0.3038 5.3615 43 1 3.1508 0.9131 5.5293 44 1 2.9543 3.1483 4.6005 45 1 -0.0182 3.3948 5.4615 46 1 1.4441 4.0991 6.2812 47 1 0.2661 6.6721 7.4486 48 1 2.1114 4.2029 2.5543 49 1 0.4636 3.4687 2.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734124936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:38 Heat of formation + Delta-G solvation = -89.760662 kcal Electronic energy + Delta-G solvation = -30238.506302 eV Core-core repulsion = 26135.378065 eV Total energy + Delta-G solvation = -4103.128238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45279 -39.83377 -38.19929 -37.42006 -36.95913 -36.15741 -34.17289 -33.88435 -31.87053 -30.26790 -29.32992 -28.05446 -27.58364 -26.40241 -25.63194 -23.35369 -21.94221 -21.23133 -20.55414 -20.22433 -19.07654 -18.76155 -18.06951 -17.31529 -17.19449 -16.82302 -16.76887 -16.56436 -16.01485 -15.75280 -15.32222 -15.07931 -14.81321 -14.56949 -14.32321 -14.09922 -14.00600 -13.94428 -13.44433 -13.24082 -13.23776 -13.18775 -13.13948 -13.06743 -13.03480 -12.93285 -12.90057 -12.66504 -12.50315 -12.29442 -11.98023 -11.96066 -11.89919 -11.83405 -11.79303 -11.52251 -11.16893 -10.89550 -10.86129 -10.34498 -9.95974 -8.89587 -7.89673 -5.22386 -0.68228 1.45959 1.46855 1.51148 1.56790 1.74657 2.23270 2.48073 2.90784 3.26249 3.31359 3.42260 3.52217 3.75632 3.81449 3.87350 4.01275 4.04349 4.14400 4.24718 4.29184 4.32560 4.49427 4.63173 4.69549 4.71951 4.81609 4.84812 4.89505 4.90673 4.98806 5.01402 5.03182 5.07532 5.15342 5.23526 5.28207 5.36019 5.41240 5.50125 5.56513 5.59818 5.69568 5.95345 5.96273 6.63669 6.93817 7.29840 7.62749 8.58315 9.27408 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.002438 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.923641 B =11482.658941 C =12056.068134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.162 4.162 4 C 0.141 3.859 5 H 0.143 0.857 6 N -1.105 6.105 7 S 2.620 3.380 8 C -0.658 4.658 9 O -0.982 6.982 10 O -1.000 7.000 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.704 5.704 14 C 0.161 3.839 15 H 0.059 0.941 16 C -0.151 4.151 17 C -0.108 4.108 18 C 0.169 3.831 19 N -0.644 5.644 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.976 3.024 25 H -0.265 1.265 26 H -0.296 1.296 27 H -0.290 1.290 28 C 0.130 3.870 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.423 0.577 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.416 0.584 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.007 0.993 46 H 0.044 0.956 47 H 0.248 0.752 48 H 0.065 0.935 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.730 -18.823 -11.435 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.220 4.220 4 C 0.030 3.970 5 H 0.161 0.839 6 N -0.863 5.863 7 S 2.716 3.284 8 C -0.812 4.812 9 O -0.972 6.972 10 O -0.990 6.990 11 C 0.301 3.699 12 O -0.444 6.444 13 N -0.357 5.357 14 C 0.055 3.945 15 H 0.078 0.922 16 C -0.210 4.210 17 C -0.128 4.128 18 C 0.043 3.957 19 N -0.371 5.371 20 C -0.360 4.360 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.224 1.224 27 H -0.217 1.217 28 C 0.005 3.995 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.997 -19.303 -11.838 25.173 hybrid contribution -0.768 1.456 1.000 1.926 sum 10.230 -17.848 -10.839 23.252 Atomic orbital electron populations 1.21839 0.95657 1.01713 1.01492 1.21588 0.96201 0.97512 0.97197 1.22050 1.02939 0.94072 1.02929 1.20946 1.01741 0.81591 0.92767 0.83910 1.55458 1.31290 1.16707 1.82859 1.04441 0.76076 0.71973 0.75895 1.30395 1.18851 1.14082 1.17822 1.93587 1.83805 1.78864 1.40951 1.93578 1.72139 1.45258 1.88064 1.20864 0.84140 0.80313 0.84539 1.90700 1.24908 1.63619 1.65201 1.46024 1.33244 1.31213 1.25191 1.20739 0.98165 0.91325 0.84224 0.92237 1.22052 1.02200 0.99667 0.97037 1.23471 1.00738 0.91255 0.97345 1.22141 0.94436 0.85473 0.93687 1.46440 1.82937 1.01055 1.06642 1.19461 1.40081 0.81952 0.94545 0.89880 1.25604 1.02837 1.02317 0.95397 1.70002 1.56181 1.35340 0.98721 0.85051 0.76661 0.80037 0.77831 1.18915 1.22369 1.21707 1.22670 0.96764 0.87593 0.92468 0.94182 0.91967 0.92823 0.88018 0.89397 0.91668 0.92654 0.74078 0.82752 0.83171 0.83792 0.74679 0.92360 0.92476 0.90388 0.87378 0.97478 0.93719 0.94340 0.91712 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.63 71.98 0.62 -2.45 16 2 C -0.10 -1.66 2.90 -10.79 -0.03 -1.70 16 3 C -0.16 -2.22 8.64 71.98 0.62 -1.60 16 4 C 0.14 1.98 2.25 44.25 0.10 2.07 16 5 H 0.14 0.72 7.15 -2.39 -0.02 0.70 16 6 N -1.10 -16.33 4.81 -172.52 -0.83 -17.16 16 7 S 2.62 34.88 6.02 -56.49 -0.34 34.54 16 8 C -0.66 -2.58 10.78 113.37 1.22 -1.36 16 9 O -0.98 -18.28 17.05 -127.65 -2.18 -20.46 16 10 O -1.00 -22.04 18.08 -127.65 -2.31 -24.35 16 11 C 0.52 10.42 5.26 87.66 0.46 10.88 16 12 O -0.57 -16.15 15.00 -3.03 -0.05 -16.19 16 13 N -0.70 -12.96 3.89 -442.56 -1.72 -14.68 16 14 C 0.16 4.14 2.38 44.99 0.11 4.25 16 15 H 0.06 1.94 7.33 -2.39 -0.02 1.93 16 16 C -0.15 -3.38 9.48 71.98 0.68 -2.70 16 17 C -0.11 -3.39 3.36 -10.13 -0.03 -3.42 16 18 C 0.17 7.64 7.08 86.44 0.61 8.26 16 19 N -0.64 -31.87 3.70 -716.09 -2.65 -34.52 16 20 C -0.23 -12.78 10.70 84.03 0.90 -11.88 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.95 -57.02 11.39 21.65 0.25 -56.78 16 24 Si 0.98 45.31 29.55 68.60 2.03 47.33 16 25 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.13 4.67 8.28 86.49 0.72 5.39 16 29 H 0.04 1.00 6.67 -2.39 -0.02 0.98 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.12 7.64 -2.38 -0.02 1.10 16 32 H 0.10 1.64 7.36 -2.39 -0.02 1.62 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.90 6.26 -2.39 -0.01 0.89 16 36 H 0.42 7.35 7.94 -96.75 -0.77 6.58 16 37 H 0.15 -0.11 7.44 -2.39 -0.02 -0.13 16 38 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.42 5.10 7.82 -92.71 -0.73 4.37 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 45 H 0.01 0.36 7.97 -2.38 -0.02 0.34 16 46 H 0.04 2.28 7.17 -2.39 -0.02 2.26 16 47 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 Total: -1.00 -82.60 402.44 -1.89 -84.49 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -0.53 Total: 15.46 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 6.44 Total: 2.32 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -4.96 Total: -123.14 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -4.53 Total: -61.00 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 34.88 SS G_CDS: -0.34 Total: 34.54 kcal Total: -82.60 -1.89 -84.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734124936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.272 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds