Wall clock time and date at job start Wed Apr 1 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47023 * 2 1 4 4 C 1.53006 * 109.46900 * 119.99686 * 2 1 3 5 5 H 1.08997 * 109.47111 * 57.10269 * 4 2 1 6 6 N 1.46503 * 109.47169 * 297.10637 * 4 2 1 7 7 S 1.65595 * 120.00097 * 119.33784 * 6 4 2 8 8 C 1.81398 * 104.45086 * 62.05335 * 7 6 4 9 9 O 1.42097 * 104.27596 * 178.12848 * 7 6 4 10 10 O 1.42108 * 104.27846 * 305.98106 * 7 6 4 11 11 C 1.50700 * 109.46832 * 177.10867 * 4 2 1 12 12 O 1.21275 * 120.00074 * 97.68145 * 11 4 2 13 13 N 1.34778 * 119.99790 * 277.67416 * 11 4 2 14 14 C 1.46496 * 120.00093 * 185.02356 * 13 11 4 15 15 H 1.09004 * 109.47140 * 35.00464 * 14 13 11 16 16 C 1.53000 * 109.47250 * 275.00225 * 14 13 11 17 17 C 1.53004 * 109.47266 * 155.00096 * 14 13 11 18 18 C 1.53498 * 114.20377 * 294.93532 * 17 14 13 19 19 N 1.47074 * 87.98440 * 220.34117 * 18 17 14 20 20 C 1.36932 * 136.05901 * 207.08383 * 19 18 17 21 21 H 1.07997 * 120.00154 * 6.88959 * 20 19 18 22 22 C 1.38818 * 119.99855 * 186.89401 * 20 19 18 23 23 N 1.31620 * 120.00010 * 6.77172 * 22 20 19 24 24 Si 1.86794 * 119.99657 * 186.77757 * 22 20 19 25 25 H 1.48498 * 109.47355 * 265.02003 * 24 22 20 26 26 H 1.48499 * 109.47394 * 25.02194 * 24 22 20 27 27 H 1.48499 * 109.47022 * 145.02377 * 24 22 20 28 28 C 1.47073 * 87.88275 * 27.34328 * 19 18 17 29 29 H 1.08997 * 109.47432 * 303.86825 * 1 2 3 30 30 H 1.09000 * 109.47108 * 63.86919 * 1 2 3 31 31 H 1.09003 * 109.47432 * 183.86833 * 1 2 3 32 32 H 1.08993 * 109.47155 * 239.99533 * 2 1 3 33 33 H 1.08992 * 109.46757 * 183.06774 * 3 2 1 34 34 H 1.09000 * 109.46523 * 303.06266 * 3 2 1 35 35 H 1.08999 * 109.46982 * 63.06419 * 3 2 1 36 36 H 0.97004 * 119.99494 * 299.33900 * 6 4 2 37 37 H 1.08998 * 109.46884 * 59.99663 * 8 7 6 38 38 H 1.09003 * 109.46952 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46889 * 300.00120 * 8 7 6 40 40 H 0.97005 * 119.99748 * 5.02853 * 13 11 4 41 41 H 1.09006 * 109.46675 * 184.78762 * 16 14 13 42 42 H 1.08992 * 109.46841 * 304.78323 * 16 14 13 43 43 H 1.08994 * 109.46935 * 64.79272 * 16 14 13 44 44 H 1.09000 * 113.41239 * 68.12884 * 17 14 13 45 45 H 1.09003 * 113.47116 * 105.56716 * 18 17 14 46 46 H 1.08996 * 113.52395 * 335.12932 * 18 17 14 47 47 H 0.96997 * 119.99514 * 180.02562 * 23 22 20 48 48 H 1.08993 * 113.46604 * 87.43501 * 28 19 18 49 49 H 1.08990 * 113.46533 * 217.87660 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6348 -1.7328 1.2757 6 7 1.6094 0.0086 2.4445 7 16 0.6382 -0.7328 3.5622 8 6 1.6302 -2.1235 4.1724 9 8 0.4681 0.2432 4.5809 10 8 -0.4694 -1.2039 2.8067 11 6 3.5453 -0.7836 1.2140 12 8 4.2005 0.0322 1.8271 13 7 4.1633 -1.7461 0.5012 14 6 5.6216 -1.8749 0.5545 15 1 5.9720 -1.6252 1.5560 16 6 6.2553 -0.9212 -0.4602 17 6 6.0191 -3.3139 0.2192 18 6 5.5415 -4.3535 1.2426 19 7 6.8423 -5.0230 1.0920 20 6 7.3159 -6.3002 1.2317 21 1 6.6295 -7.1137 1.4143 22 6 8.6784 -6.5492 1.1388 23 7 9.5262 -5.5463 1.0500 24 14 9.3085 -8.3077 1.1395 25 1 9.6912 -8.6958 2.5208 26 1 8.2417 -9.2160 0.6477 27 1 10.4938 -8.4091 0.2506 28 6 7.4119 -3.7158 0.7316 29 1 -0.3634 0.5727 0.8533 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3634 -1.0253 0.0693 32 1 1.8933 -0.5139 -0.8899 33 1 3.1285 1.4430 -0.0550 34 1 1.6325 1.9719 -0.8613 35 1 1.7222 1.9403 0.9162 36 1 1.8932 0.9260 2.5810 37 1 2.5497 -1.7454 4.6192 38 1 1.0615 -2.6744 4.9216 39 1 1.8753 -2.7866 3.3427 40 1 3.6424 -2.3535 -0.0472 41 1 7.3339 -1.0774 -0.4812 42 1 5.8408 -1.1153 -1.4493 43 1 6.0429 0.1085 -0.1727 44 1 5.8251 -3.5863 -0.8182 45 1 4.7015 -4.9534 0.8924 46 1 5.3784 -3.9408 2.2382 47 1 10.4782 -5.7204 0.9847 48 1 7.7423 -3.1342 1.5921 49 1 8.1653 -3.7724 -0.0540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734124937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:41 Heat of formation + Delta-G solvation = -58.669743 kcal Electronic energy + Delta-G solvation = -30168.698719 eV Core-core repulsion = 26066.918684 eV Total energy + Delta-G solvation = -4101.780034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.41987 -38.58265 -37.42336 -36.83201 -36.20237 -34.94917 -32.91970 -32.28659 -30.79383 -29.73761 -27.62680 -27.40334 -27.13884 -24.67146 -24.10302 -21.84125 -20.95250 -20.26526 -19.75521 -19.36318 -18.18000 -17.40263 -16.82620 -16.70697 -16.31493 -15.89783 -15.44708 -15.11303 -14.87683 -14.61778 -14.30780 -14.09294 -13.68594 -13.63678 -13.56561 -13.43642 -13.09096 -12.66765 -12.49908 -12.37998 -12.32000 -12.25713 -12.19644 -12.15779 -11.72108 -11.58840 -11.45190 -11.41415 -11.33448 -11.23107 -11.11517 -10.98235 -10.78699 -10.47876 -10.44965 -10.08445 -9.92514 -9.44335 -9.26337 -8.98721 -8.84124 -6.96184 -5.85956 -3.17183 -0.03338 2.23972 2.53872 3.11109 3.34018 3.39219 3.41501 3.50897 3.91088 4.26429 4.38764 4.38994 4.44547 4.52629 4.65627 4.81692 4.96857 5.04493 5.10982 5.27530 5.30499 5.30970 5.45396 5.45788 5.46937 5.57918 5.66113 5.71046 5.72583 5.82653 5.89416 6.00029 6.05618 6.13524 6.16920 6.28457 6.34647 6.48678 6.54437 6.65966 6.68732 7.09718 7.24774 7.44165 7.49070 7.89227 8.14894 8.95855 9.62617 10.56408 11.32725 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002672 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.587538 B =10477.065014 C =11459.726451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.150 4.150 4 C 0.139 3.861 5 H 0.108 0.892 6 N -1.095 6.095 7 S 2.611 3.389 8 C -0.674 4.674 9 O -0.958 6.958 10 O -0.951 6.951 11 C 0.500 3.500 12 O -0.528 6.528 13 N -0.717 5.717 14 C 0.155 3.845 15 H 0.087 0.913 16 C -0.158 4.158 17 C -0.155 4.155 18 C 0.124 3.876 19 N -0.609 5.609 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.279 1.279 27 H -0.289 1.289 28 C 0.176 3.824 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.425 0.575 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.029 0.971 47 H 0.255 0.745 48 H 0.030 0.970 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.850 12.017 -2.154 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.207 4.207 4 C 0.027 3.973 5 H 0.126 0.874 6 N -0.855 5.855 7 S 2.703 3.297 8 C -0.824 4.824 9 O -0.948 6.948 10 O -0.941 6.941 11 C 0.283 3.717 12 O -0.404 6.404 13 N -0.368 5.368 14 C 0.051 3.949 15 H 0.105 0.895 16 C -0.216 4.216 17 C -0.175 4.175 18 C -0.003 4.003 19 N -0.334 5.334 20 C -0.350 4.350 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.564 5.564 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.215 1.215 28 C 0.049 3.951 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.234 0.766 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.065 0.935 48 H 0.048 0.952 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.026 12.386 -1.440 21.918 hybrid contribution 1.106 -1.339 0.017 1.737 sum -16.919 11.047 -1.423 20.256 Atomic orbital electron populations 1.21832 0.93289 1.03065 1.02018 1.21365 0.97341 0.97296 0.95506 1.21844 1.01624 0.95134 1.02119 1.20808 0.91955 0.97084 0.87463 0.87377 1.55432 1.70478 1.25794 1.33757 1.04858 0.74900 0.76087 0.73856 1.30553 1.17215 1.21074 1.13599 1.93626 1.85332 1.57302 1.58567 1.93637 1.48122 1.82651 1.69702 1.20867 0.90012 0.81404 0.79410 1.90701 1.66711 1.38905 1.44035 1.46198 1.08805 1.33840 1.47966 1.21041 0.77984 0.95388 1.00535 0.89496 1.22099 1.01581 0.99218 0.98695 1.23731 1.02403 0.91313 1.00094 1.22369 0.91037 0.91690 0.95180 1.45659 1.04987 1.03186 1.79596 1.18931 0.90904 0.81682 1.43457 0.90124 1.24839 0.95591 0.97658 1.02213 1.69844 1.01706 1.29171 1.55691 0.86103 0.78427 0.83723 0.77505 1.21584 1.20483 1.21527 1.21939 0.91266 0.85141 0.96756 0.92123 0.92448 0.91632 0.89556 0.92040 0.92235 0.92221 0.73742 0.84833 0.85144 0.85324 0.76643 0.91154 0.92747 0.92645 0.88852 0.94462 0.95382 0.93540 0.95202 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.40 37.16 0.31 -0.76 16 2 C -0.09 -0.68 2.76 -90.61 -0.25 -0.93 16 3 C -0.15 -1.17 8.71 37.16 0.32 -0.85 16 4 C 0.14 1.10 2.24 -69.08 -0.16 0.95 16 5 H 0.11 0.62 7.51 -51.93 -0.39 0.23 16 6 N -1.10 -9.07 4.11 -5.88 -0.02 -9.09 16 7 S 2.61 22.48 5.94 -107.50 -0.64 21.84 16 8 C -0.67 -4.65 10.81 101.05 1.09 -3.56 16 9 O -0.96 -11.64 18.08 -57.54 -1.04 -12.68 16 10 O -0.95 -10.00 16.90 -57.54 -0.97 -10.98 16 11 C 0.50 5.31 6.06 -10.98 -0.07 5.24 16 12 O -0.53 -7.40 15.85 5.56 0.09 -7.31 16 13 N -0.72 -7.37 4.95 -53.81 -0.27 -7.64 16 14 C 0.16 2.08 2.30 -67.93 -0.16 1.92 16 15 H 0.09 1.37 7.50 -51.93 -0.39 0.98 16 16 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 17 C -0.16 -2.50 3.52 -89.97 -0.32 -2.82 16 18 C 0.12 2.31 8.13 -8.49 -0.07 2.24 16 19 N -0.61 -14.99 3.76 -184.57 -0.69 -15.68 16 20 C -0.22 -6.09 10.73 -15.06 -0.16 -6.25 16 21 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 22 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 23 N -0.92 -26.76 11.83 55.49 0.66 -26.10 16 24 Si 0.91 21.64 29.56 -169.99 -5.02 16.61 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.18 3.86 6.79 -8.36 -0.06 3.80 16 29 H 0.06 0.51 7.54 -51.93 -0.39 0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 6.65 -51.93 -0.35 0.12 16 36 H 0.43 3.51 7.31 -34.47 -0.25 3.26 16 37 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.13 0.76 7.89 -51.92 -0.41 0.35 16 40 H 0.40 3.12 8.61 -40.82 -0.35 2.77 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.03 0.69 8.00 -51.93 -0.42 0.28 16 49 H 0.06 1.50 7.60 -51.93 -0.39 1.11 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -36.17 407.33 -9.35 -45.52 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.33 Total: 2.23 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.75 Total: -2.87 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.33 Total: -58.51 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.92 Total: -30.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 22.48 SS G_CDS: -0.64 Total: 21.84 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.17 -9.35 -45.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734124937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.147 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds