Wall clock time and date at job start Wed Apr 1 2020 05:20:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.47023 * 2 1
4 4 C 1.53006 * 109.46900 * 119.99686 * 2 1 3
5 5 H 1.08997 * 109.47111 * 57.10269 * 4 2 1
6 6 N 1.46503 * 109.47169 * 297.10637 * 4 2 1
7 7 S 1.65595 * 120.00097 * 119.33784 * 6 4 2
8 8 C 1.81398 * 104.45086 * 62.05335 * 7 6 4
9 9 O 1.42097 * 104.27596 * 178.12848 * 7 6 4
10 10 O 1.42108 * 104.27846 * 305.98106 * 7 6 4
11 11 C 1.50700 * 109.46832 * 177.10867 * 4 2 1
12 12 O 1.21275 * 120.00074 * 97.68145 * 11 4 2
13 13 N 1.34778 * 119.99790 * 277.67416 * 11 4 2
14 14 C 1.46496 * 120.00093 * 185.02356 * 13 11 4
15 15 H 1.09004 * 109.47140 * 35.00464 * 14 13 11
16 16 C 1.53000 * 109.47250 * 275.00225 * 14 13 11
17 17 C 1.53004 * 109.47266 * 155.00096 * 14 13 11
18 18 C 1.53498 * 114.20377 * 294.93532 * 17 14 13
19 19 N 1.47074 * 87.98440 * 220.34117 * 18 17 14
20 20 C 1.36932 * 136.05901 * 207.08383 * 19 18 17
21 21 H 1.07997 * 120.00154 * 6.88959 * 20 19 18
22 22 C 1.38818 * 119.99855 * 186.89401 * 20 19 18
23 23 N 1.31620 * 120.00010 * 6.77172 * 22 20 19
24 24 Si 1.86794 * 119.99657 * 186.77757 * 22 20 19
25 25 H 1.48498 * 109.47355 * 265.02003 * 24 22 20
26 26 H 1.48499 * 109.47394 * 25.02194 * 24 22 20
27 27 H 1.48499 * 109.47022 * 145.02377 * 24 22 20
28 28 C 1.47073 * 87.88275 * 27.34328 * 19 18 17
29 29 H 1.08997 * 109.47432 * 303.86825 * 1 2 3
30 30 H 1.09000 * 109.47108 * 63.86919 * 1 2 3
31 31 H 1.09003 * 109.47432 * 183.86833 * 1 2 3
32 32 H 1.08993 * 109.47155 * 239.99533 * 2 1 3
33 33 H 1.08992 * 109.46757 * 183.06774 * 3 2 1
34 34 H 1.09000 * 109.46523 * 303.06266 * 3 2 1
35 35 H 1.08999 * 109.46982 * 63.06419 * 3 2 1
36 36 H 0.97004 * 119.99494 * 299.33900 * 6 4 2
37 37 H 1.08998 * 109.46884 * 59.99663 * 8 7 6
38 38 H 1.09003 * 109.46952 * 180.02562 * 8 7 6
39 39 H 1.09001 * 109.46889 * 300.00120 * 8 7 6
40 40 H 0.97005 * 119.99748 * 5.02853 * 13 11 4
41 41 H 1.09006 * 109.46675 * 184.78762 * 16 14 13
42 42 H 1.08992 * 109.46841 * 304.78323 * 16 14 13
43 43 H 1.08994 * 109.46935 * 64.79272 * 16 14 13
44 44 H 1.09000 * 113.41239 * 68.12884 * 17 14 13
45 45 H 1.09003 * 113.47116 * 105.56716 * 18 17 14
46 46 H 1.08996 * 113.52395 * 335.12932 * 18 17 14
47 47 H 0.96997 * 119.99514 * 180.02562 * 23 22 20
48 48 H 1.08993 * 113.46604 * 87.43501 * 28 19 18
49 49 H 1.08990 * 113.46533 * 217.87660 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.6348 -1.7328 1.2757
6 7 1.6094 0.0086 2.4445
7 16 0.6382 -0.7328 3.5622
8 6 1.6302 -2.1235 4.1724
9 8 0.4681 0.2432 4.5809
10 8 -0.4694 -1.2039 2.8067
11 6 3.5453 -0.7836 1.2140
12 8 4.2005 0.0322 1.8271
13 7 4.1633 -1.7461 0.5012
14 6 5.6216 -1.8749 0.5545
15 1 5.9720 -1.6252 1.5560
16 6 6.2553 -0.9212 -0.4602
17 6 6.0191 -3.3139 0.2192
18 6 5.5415 -4.3535 1.2426
19 7 6.8423 -5.0230 1.0920
20 6 7.3159 -6.3002 1.2317
21 1 6.6295 -7.1137 1.4143
22 6 8.6784 -6.5492 1.1388
23 7 9.5262 -5.5463 1.0500
24 14 9.3085 -8.3077 1.1395
25 1 9.6912 -8.6958 2.5208
26 1 8.2417 -9.2160 0.6477
27 1 10.4938 -8.4091 0.2506
28 6 7.4119 -3.7158 0.7316
29 1 -0.3634 0.5727 0.8533
30 1 -0.3633 0.4526 -0.9226
31 1 -0.3634 -1.0253 0.0693
32 1 1.8933 -0.5139 -0.8899
33 1 3.1285 1.4430 -0.0550
34 1 1.6325 1.9719 -0.8613
35 1 1.7222 1.9403 0.9162
36 1 1.8932 0.9260 2.5810
37 1 2.5497 -1.7454 4.6192
38 1 1.0615 -2.6744 4.9216
39 1 1.8753 -2.7866 3.3427
40 1 3.6424 -2.3535 -0.0472
41 1 7.3339 -1.0774 -0.4812
42 1 5.8408 -1.1153 -1.4493
43 1 6.0429 0.1085 -0.1727
44 1 5.8251 -3.5863 -0.8182
45 1 4.7015 -4.9534 0.8924
46 1 5.3784 -3.9408 2.2382
47 1 10.4782 -5.7204 0.9847
48 1 7.7423 -3.1342 1.5921
49 1 8.1653 -3.7724 -0.0540
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734124937.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:20:40
Heat of formation + Delta-G solvation = -87.181068 kcal
Electronic energy + Delta-G solvation = -30169.935062 eV
Core-core repulsion = 26066.918684 eV
Total energy + Delta-G solvation = -4103.016378 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.34399 -40.00077 -38.23383 -37.63886 -36.98510 -36.11567 -34.18392 -33.54141
-31.96542 -30.30944 -29.39776 -27.99905 -27.88633 -26.28642 -25.70258 -23.10151
-21.84438 -21.16671 -20.76211 -20.36979 -18.94416 -18.76493 -18.18960 -17.47605
-17.20406 -16.81813 -16.76363 -16.21520 -15.97855 -15.76984 -15.43806 -15.25414
-14.84577 -14.73750 -14.27088 -14.10185 -14.04616 -13.92017 -13.37020 -13.35113
-13.21265 -13.18141 -13.13043 -13.02809 -13.01361 -12.96349 -12.81118 -12.68626
-12.36392 -12.23489 -12.11310 -12.02441 -11.88031 -11.81329 -11.68592 -11.55715
-11.19685 -10.99198 -10.84732 -10.21630 -9.98018 -8.92854 -7.93630 -5.25318
-0.70703 1.46339 1.47301 1.51542 1.56977 1.74552 2.23631 2.47392
2.83555 3.24986 3.30439 3.45824 3.55963 3.71849 3.80435 3.86012
3.99260 4.03370 4.09721 4.23883 4.31300 4.37373 4.47202 4.60131
4.68679 4.72930 4.81833 4.88956 4.90496 4.91119 4.93680 4.99979
5.06065 5.14254 5.14853 5.23357 5.27052 5.35041 5.46270 5.51450
5.57626 5.59922 5.67193 5.91738 5.98495 6.67082 6.89820 7.32757
7.59606 8.60914 9.25498
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.015495 B = 0.002672 C = 0.002443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1806.587538 B =10477.065014 C =11459.726451
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.091 4.091
3 C -0.150 4.150
4 C 0.139 3.861
5 H 0.138 0.862
6 N -1.096 6.096
7 S 2.627 3.373
8 C -0.669 4.669
9 O -0.998 6.998
10 O -0.970 6.970
11 C 0.504 3.496
12 O -0.563 6.563
13 N -0.706 5.706
14 C 0.168 3.832
15 H 0.062 0.938
16 C -0.152 4.152
17 C -0.113 4.113
18 C 0.126 3.874
19 N -0.643 5.643
20 C -0.230 4.230
21 H 0.088 0.912
22 C -0.068 4.068
23 N -0.954 5.954
24 Si 0.978 3.022
25 H -0.290 1.290
26 H -0.264 1.264
27 H -0.295 1.295
28 C 0.169 3.831
29 H 0.046 0.954
30 H 0.067 0.933
31 H 0.066 0.934
32 H 0.106 0.894
33 H 0.044 0.956
34 H 0.069 0.931
35 H 0.054 0.946
36 H 0.425 0.575
37 H 0.132 0.868
38 H 0.148 0.852
39 H 0.145 0.855
40 H 0.417 0.583
41 H 0.057 0.943
42 H 0.075 0.925
43 H 0.052 0.948
44 H 0.111 0.889
45 H 0.063 0.937
46 H 0.032 0.968
47 H 0.248 0.752
48 H 0.009 0.991
49 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.922 11.010 -3.255 22.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.111 4.111
3 C -0.207 4.207
4 C 0.027 3.973
5 H 0.155 0.845
6 N -0.855 5.855
7 S 2.721 3.279
8 C -0.821 4.821
9 O -0.988 6.988
10 O -0.960 6.960
11 C 0.288 3.712
12 O -0.441 6.441
13 N -0.359 5.359
14 C 0.062 3.938
15 H 0.080 0.920
16 C -0.210 4.210
17 C -0.133 4.133
18 C 0.001 3.999
19 N -0.369 5.369
20 C -0.358 4.358
21 H 0.105 0.895
22 C -0.261 4.261
23 N -0.603 5.603
24 Si 0.806 3.194
25 H -0.217 1.217
26 H -0.188 1.188
27 H -0.221 1.221
28 C 0.042 3.958
29 H 0.065 0.935
30 H 0.086 0.914
31 H 0.085 0.915
32 H 0.125 0.875
33 H 0.064 0.936
34 H 0.088 0.912
35 H 0.073 0.927
36 H 0.261 0.739
37 H 0.151 0.849
38 H 0.166 0.834
39 H 0.164 0.836
40 H 0.254 0.746
41 H 0.076 0.924
42 H 0.094 0.906
43 H 0.071 0.929
44 H 0.129 0.871
45 H 0.081 0.919
46 H 0.050 0.950
47 H 0.057 0.943
48 H 0.027 0.973
49 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -20.178 11.392 -2.563 23.313
hybrid contribution 1.724 -0.994 0.393 2.028
sum -18.455 10.398 -2.170 21.293
Atomic orbital electron populations
1.21816 0.93227 1.03017 1.02012 1.21394 0.97197 0.96807 0.95721
1.21836 1.00529 0.95976 1.02386 1.20979 0.89791 0.98795 0.87728
0.84462 1.55366 1.70192 1.25909 1.34050 1.04255 0.74723 0.75882
0.73021 1.30493 1.16756 1.20154 1.14722 1.93573 1.86132 1.59294
1.59818 1.93607 1.49527 1.82853 1.70008 1.21309 0.91012 0.80508
0.78339 1.90701 1.67712 1.40254 1.45409 1.45961 1.07338 1.34309
1.48282 1.20629 0.80088 0.93552 0.99523 0.91977 1.22032 1.00851
0.98711 0.99412 1.23344 0.97228 0.92468 1.00214 1.22524 0.89487
0.91884 0.96025 1.46077 1.07773 1.03135 1.79903 1.19369 0.91268
0.83421 1.41787 0.89461 1.25680 0.96022 1.01434 1.02954 1.70029
1.01452 1.31144 1.57653 0.85068 0.77760 0.79483 0.77062 1.21681
1.18792 1.22124 1.21899 0.93742 0.84783 0.95358 0.93466 0.91390
0.91475 0.87549 0.93649 0.91232 0.92726 0.73864 0.84917 0.83406
0.83620 0.74627 0.92417 0.90618 0.92863 0.87097 0.91866 0.95039
0.94287 0.97276 0.95213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.76 8.40 71.98 0.60 -1.16 16
2 C -0.09 -1.05 2.76 -10.79 -0.03 -1.08 16
3 C -0.15 -2.10 8.71 71.98 0.63 -1.47 16
4 C 0.14 1.84 2.24 44.25 0.10 1.94 16
5 H 0.14 1.02 7.51 -2.39 -0.02 1.01 16
6 N -1.10 -16.68 4.11 -172.51 -0.71 -17.39 16
7 S 2.63 41.88 5.94 -56.49 -0.34 41.55 16
8 C -0.67 -7.57 10.81 113.37 1.23 -6.34 16
9 O -1.00 -24.08 18.08 -127.65 -2.31 -26.39 16
10 O -0.97 -18.78 16.90 -127.65 -2.16 -20.94 16
11 C 0.50 9.57 6.06 87.66 0.53 10.10 16
12 O -0.56 -15.23 15.85 -3.01 -0.05 -15.28 16
13 N -0.71 -12.39 4.95 -442.54 -2.19 -14.59 16
14 C 0.17 4.22 2.30 44.99 0.10 4.32 16
15 H 0.06 1.93 7.50 -2.39 -0.02 1.91 16
16 C -0.15 -3.55 9.48 71.98 0.68 -2.86 16
17 C -0.11 -3.44 3.52 -10.37 -0.04 -3.47 16
18 C 0.13 4.41 8.13 83.18 0.68 5.09 16
19 N -0.64 -31.43 3.76 -737.84 -2.78 -34.21 16
20 C -0.23 -12.53 10.73 84.04 0.90 -11.63 16
21 H 0.09 4.49 7.84 -2.91 -0.02 4.46 16
22 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16
23 N -0.95 -57.19 11.83 21.65 0.26 -56.94 16
24 Si 0.98 44.72 29.56 68.60 2.03 46.75 16
25 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16
26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16
27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16
28 C 0.17 7.56 6.79 83.27 0.57 8.12 16
29 H 0.05 0.71 7.54 -2.39 -0.02 0.69 16
30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.04 0.79 7.18 -2.39 -0.02 0.77 16
34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
35 H 0.05 0.81 6.65 -2.39 -0.02 0.79 16
36 H 0.42 6.82 7.31 -96.74 -0.71 6.11 16
37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16
39 H 0.15 1.18 7.89 -2.39 -0.02 1.16 16
40 H 0.42 4.66 8.61 -92.70 -0.80 3.86 16
41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16
42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
44 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16
45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
46 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16
47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
48 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16
49 H 0.03 1.49 7.60 -2.39 -0.02 1.48 16
Total: -1.00 -80.13 407.33 -2.38 -82.50
By element:
Atomic # 1 Polarization: 17.25 SS G_CDS: -0.55 Total: 16.69 kcal
Atomic # 6 Polarization: -8.19 SS G_CDS: 6.42 Total: -1.77 kcal
Atomic # 7 Polarization: -117.70 SS G_CDS: -5.42 Total: -123.12 kcal
Atomic # 8 Polarization: -58.09 SS G_CDS: -4.51 Total: -62.60 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal
Atomic # 16 Polarization: 41.88 SS G_CDS: -0.34 Total: 41.55 kcal
Total: -80.13 -2.38 -82.50 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734124937.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.677 kcal
(2) G-P(sol) polarization free energy of solvation -80.125 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds