Wall clock time and date at job start Wed Apr 1 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47023 * 2 1 4 4 C 1.53006 * 109.46900 * 119.99686 * 2 1 3 5 5 H 1.08997 * 109.47111 * 57.10269 * 4 2 1 6 6 N 1.46503 * 109.47169 * 297.10637 * 4 2 1 7 7 S 1.65595 * 120.00097 * 119.33784 * 6 4 2 8 8 C 1.81398 * 104.45086 * 62.05335 * 7 6 4 9 9 O 1.42097 * 104.27596 * 178.12848 * 7 6 4 10 10 O 1.42108 * 104.27846 * 305.98106 * 7 6 4 11 11 C 1.50700 * 109.46832 * 177.10867 * 4 2 1 12 12 O 1.21275 * 120.00074 * 97.68145 * 11 4 2 13 13 N 1.34778 * 119.99790 * 277.67416 * 11 4 2 14 14 C 1.46496 * 120.00093 * 185.02356 * 13 11 4 15 15 H 1.09004 * 109.47140 * 35.00464 * 14 13 11 16 16 C 1.53000 * 109.47250 * 275.00225 * 14 13 11 17 17 C 1.53004 * 109.47266 * 155.00096 * 14 13 11 18 18 C 1.53498 * 114.20377 * 294.93532 * 17 14 13 19 19 N 1.47074 * 87.98440 * 220.34117 * 18 17 14 20 20 C 1.36932 * 136.05901 * 207.08383 * 19 18 17 21 21 H 1.07997 * 120.00154 * 6.88959 * 20 19 18 22 22 C 1.38818 * 119.99855 * 186.89401 * 20 19 18 23 23 N 1.31620 * 120.00010 * 6.77172 * 22 20 19 24 24 Si 1.86794 * 119.99657 * 186.77757 * 22 20 19 25 25 H 1.48498 * 109.47355 * 265.02003 * 24 22 20 26 26 H 1.48499 * 109.47394 * 25.02194 * 24 22 20 27 27 H 1.48499 * 109.47022 * 145.02377 * 24 22 20 28 28 C 1.47073 * 87.88275 * 27.34328 * 19 18 17 29 29 H 1.08997 * 109.47432 * 303.86825 * 1 2 3 30 30 H 1.09000 * 109.47108 * 63.86919 * 1 2 3 31 31 H 1.09003 * 109.47432 * 183.86833 * 1 2 3 32 32 H 1.08993 * 109.47155 * 239.99533 * 2 1 3 33 33 H 1.08992 * 109.46757 * 183.06774 * 3 2 1 34 34 H 1.09000 * 109.46523 * 303.06266 * 3 2 1 35 35 H 1.08999 * 109.46982 * 63.06419 * 3 2 1 36 36 H 0.97004 * 119.99494 * 299.33900 * 6 4 2 37 37 H 1.08998 * 109.46884 * 59.99663 * 8 7 6 38 38 H 1.09003 * 109.46952 * 180.02562 * 8 7 6 39 39 H 1.09001 * 109.46889 * 300.00120 * 8 7 6 40 40 H 0.97005 * 119.99748 * 5.02853 * 13 11 4 41 41 H 1.09006 * 109.46675 * 184.78762 * 16 14 13 42 42 H 1.08992 * 109.46841 * 304.78323 * 16 14 13 43 43 H 1.08994 * 109.46935 * 64.79272 * 16 14 13 44 44 H 1.09000 * 113.41239 * 68.12884 * 17 14 13 45 45 H 1.09003 * 113.47116 * 105.56716 * 18 17 14 46 46 H 1.08996 * 113.52395 * 335.12932 * 18 17 14 47 47 H 0.96997 * 119.99514 * 180.02562 * 23 22 20 48 48 H 1.08993 * 113.46604 * 87.43501 * 28 19 18 49 49 H 1.08990 * 113.46533 * 217.87660 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6348 -1.7328 1.2757 6 7 1.6094 0.0086 2.4445 7 16 0.6382 -0.7328 3.5622 8 6 1.6302 -2.1235 4.1724 9 8 0.4681 0.2432 4.5809 10 8 -0.4694 -1.2039 2.8067 11 6 3.5453 -0.7836 1.2140 12 8 4.2005 0.0322 1.8271 13 7 4.1633 -1.7461 0.5012 14 6 5.6216 -1.8749 0.5545 15 1 5.9720 -1.6252 1.5560 16 6 6.2553 -0.9212 -0.4602 17 6 6.0191 -3.3139 0.2192 18 6 5.5415 -4.3535 1.2426 19 7 6.8423 -5.0230 1.0920 20 6 7.3159 -6.3002 1.2317 21 1 6.6295 -7.1137 1.4143 22 6 8.6784 -6.5492 1.1388 23 7 9.5262 -5.5463 1.0500 24 14 9.3085 -8.3077 1.1395 25 1 9.6912 -8.6958 2.5208 26 1 8.2417 -9.2160 0.6477 27 1 10.4938 -8.4091 0.2506 28 6 7.4119 -3.7158 0.7316 29 1 -0.3634 0.5727 0.8533 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3634 -1.0253 0.0693 32 1 1.8933 -0.5139 -0.8899 33 1 3.1285 1.4430 -0.0550 34 1 1.6325 1.9719 -0.8613 35 1 1.7222 1.9403 0.9162 36 1 1.8932 0.9260 2.5810 37 1 2.5497 -1.7454 4.6192 38 1 1.0615 -2.6744 4.9216 39 1 1.8753 -2.7866 3.3427 40 1 3.6424 -2.3535 -0.0472 41 1 7.3339 -1.0774 -0.4812 42 1 5.8408 -1.1153 -1.4493 43 1 6.0429 0.1085 -0.1727 44 1 5.8251 -3.5863 -0.8182 45 1 4.7015 -4.9534 0.8924 46 1 5.3784 -3.9408 2.2382 47 1 10.4782 -5.7204 0.9847 48 1 7.7423 -3.1342 1.5921 49 1 8.1653 -3.7724 -0.0540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734124937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:40 Heat of formation + Delta-G solvation = -87.181068 kcal Electronic energy + Delta-G solvation = -30169.935062 eV Core-core repulsion = 26066.918684 eV Total energy + Delta-G solvation = -4103.016378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34399 -40.00077 -38.23383 -37.63886 -36.98510 -36.11567 -34.18392 -33.54141 -31.96542 -30.30944 -29.39776 -27.99905 -27.88633 -26.28642 -25.70258 -23.10151 -21.84438 -21.16671 -20.76211 -20.36979 -18.94416 -18.76493 -18.18960 -17.47605 -17.20406 -16.81813 -16.76363 -16.21520 -15.97855 -15.76984 -15.43806 -15.25414 -14.84577 -14.73750 -14.27088 -14.10185 -14.04616 -13.92017 -13.37020 -13.35113 -13.21265 -13.18141 -13.13043 -13.02809 -13.01361 -12.96349 -12.81118 -12.68626 -12.36392 -12.23489 -12.11310 -12.02441 -11.88031 -11.81329 -11.68592 -11.55715 -11.19685 -10.99198 -10.84732 -10.21630 -9.98018 -8.92854 -7.93630 -5.25318 -0.70703 1.46339 1.47301 1.51542 1.56977 1.74552 2.23631 2.47392 2.83555 3.24986 3.30439 3.45824 3.55963 3.71849 3.80435 3.86012 3.99260 4.03370 4.09721 4.23883 4.31300 4.37373 4.47202 4.60131 4.68679 4.72930 4.81833 4.88956 4.90496 4.91119 4.93680 4.99979 5.06065 5.14254 5.14853 5.23357 5.27052 5.35041 5.46270 5.51450 5.57626 5.59922 5.67193 5.91738 5.98495 6.67082 6.89820 7.32757 7.59606 8.60914 9.25498 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002672 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.587538 B =10477.065014 C =11459.726451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.150 4.150 4 C 0.139 3.861 5 H 0.138 0.862 6 N -1.096 6.096 7 S 2.627 3.373 8 C -0.669 4.669 9 O -0.998 6.998 10 O -0.970 6.970 11 C 0.504 3.496 12 O -0.563 6.563 13 N -0.706 5.706 14 C 0.168 3.832 15 H 0.062 0.938 16 C -0.152 4.152 17 C -0.113 4.113 18 C 0.126 3.874 19 N -0.643 5.643 20 C -0.230 4.230 21 H 0.088 0.912 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.978 3.022 25 H -0.290 1.290 26 H -0.264 1.264 27 H -0.295 1.295 28 C 0.169 3.831 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.425 0.575 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.417 0.583 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.248 0.752 48 H 0.009 0.991 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.922 11.010 -3.255 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.207 4.207 4 C 0.027 3.973 5 H 0.155 0.845 6 N -0.855 5.855 7 S 2.721 3.279 8 C -0.821 4.821 9 O -0.988 6.988 10 O -0.960 6.960 11 C 0.288 3.712 12 O -0.441 6.441 13 N -0.359 5.359 14 C 0.062 3.938 15 H 0.080 0.920 16 C -0.210 4.210 17 C -0.133 4.133 18 C 0.001 3.999 19 N -0.369 5.369 20 C -0.358 4.358 21 H 0.105 0.895 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.806 3.194 25 H -0.217 1.217 26 H -0.188 1.188 27 H -0.221 1.221 28 C 0.042 3.958 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.178 11.392 -2.563 23.313 hybrid contribution 1.724 -0.994 0.393 2.028 sum -18.455 10.398 -2.170 21.293 Atomic orbital electron populations 1.21816 0.93227 1.03017 1.02012 1.21394 0.97197 0.96807 0.95721 1.21836 1.00529 0.95976 1.02386 1.20979 0.89791 0.98795 0.87728 0.84462 1.55366 1.70192 1.25909 1.34050 1.04255 0.74723 0.75882 0.73021 1.30493 1.16756 1.20154 1.14722 1.93573 1.86132 1.59294 1.59818 1.93607 1.49527 1.82853 1.70008 1.21309 0.91012 0.80508 0.78339 1.90701 1.67712 1.40254 1.45409 1.45961 1.07338 1.34309 1.48282 1.20629 0.80088 0.93552 0.99523 0.91977 1.22032 1.00851 0.98711 0.99412 1.23344 0.97228 0.92468 1.00214 1.22524 0.89487 0.91884 0.96025 1.46077 1.07773 1.03135 1.79903 1.19369 0.91268 0.83421 1.41787 0.89461 1.25680 0.96022 1.01434 1.02954 1.70029 1.01452 1.31144 1.57653 0.85068 0.77760 0.79483 0.77062 1.21681 1.18792 1.22124 1.21899 0.93742 0.84783 0.95358 0.93466 0.91390 0.91475 0.87549 0.93649 0.91232 0.92726 0.73864 0.84917 0.83406 0.83620 0.74627 0.92417 0.90618 0.92863 0.87097 0.91866 0.95039 0.94287 0.97276 0.95213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.40 71.98 0.60 -1.16 16 2 C -0.09 -1.05 2.76 -10.79 -0.03 -1.08 16 3 C -0.15 -2.10 8.71 71.98 0.63 -1.47 16 4 C 0.14 1.84 2.24 44.25 0.10 1.94 16 5 H 0.14 1.02 7.51 -2.39 -0.02 1.01 16 6 N -1.10 -16.68 4.11 -172.51 -0.71 -17.39 16 7 S 2.63 41.88 5.94 -56.49 -0.34 41.55 16 8 C -0.67 -7.57 10.81 113.37 1.23 -6.34 16 9 O -1.00 -24.08 18.08 -127.65 -2.31 -26.39 16 10 O -0.97 -18.78 16.90 -127.65 -2.16 -20.94 16 11 C 0.50 9.57 6.06 87.66 0.53 10.10 16 12 O -0.56 -15.23 15.85 -3.01 -0.05 -15.28 16 13 N -0.71 -12.39 4.95 -442.54 -2.19 -14.59 16 14 C 0.17 4.22 2.30 44.99 0.10 4.32 16 15 H 0.06 1.93 7.50 -2.39 -0.02 1.91 16 16 C -0.15 -3.55 9.48 71.98 0.68 -2.86 16 17 C -0.11 -3.44 3.52 -10.37 -0.04 -3.47 16 18 C 0.13 4.41 8.13 83.18 0.68 5.09 16 19 N -0.64 -31.43 3.76 -737.84 -2.78 -34.21 16 20 C -0.23 -12.53 10.73 84.04 0.90 -11.63 16 21 H 0.09 4.49 7.84 -2.91 -0.02 4.46 16 22 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 23 N -0.95 -57.19 11.83 21.65 0.26 -56.94 16 24 Si 0.98 44.72 29.56 68.60 2.03 46.75 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 C 0.17 7.56 6.79 83.27 0.57 8.12 16 29 H 0.05 0.71 7.54 -2.39 -0.02 0.69 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.79 7.18 -2.39 -0.02 0.77 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.81 6.65 -2.39 -0.02 0.79 16 36 H 0.42 6.82 7.31 -96.74 -0.71 6.11 16 37 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.15 1.18 7.89 -2.39 -0.02 1.16 16 40 H 0.42 4.66 8.61 -92.70 -0.80 3.86 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 48 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16 49 H 0.03 1.49 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -80.13 407.33 -2.38 -82.50 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.55 Total: 16.69 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.42 Total: -1.77 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.42 Total: -123.12 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -4.51 Total: -62.60 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 41.88 SS G_CDS: -0.34 Total: 41.55 kcal Total: -80.13 -2.38 -82.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734124937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.677 kcal (2) G-P(sol) polarization free energy of solvation -80.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds