Wall clock time and date at job start Wed Apr 1 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.46988 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47577 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47577 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47015 * 179.97438 * 10 9 8 12 12 S 1.81405 * 109.46940 * 179.97438 * 11 10 9 13 13 N 1.65604 * 104.44836 * 180.02562 * 12 11 10 14 14 O 1.42093 * 110.54416 * 291.62681 * 12 11 10 15 15 O 1.42102 * 110.53870 * 68.38185 * 12 11 10 16 16 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 17 17 C 1.53486 * 114.20850 * 60.00280 * 16 2 1 18 18 N 1.47064 * 87.98715 * 87.51930 * 17 16 2 19 19 C 1.36943 * 136.05552 * 207.08901 * 18 17 16 20 20 H 1.07995 * 119.99927 * 7.55397 * 19 18 17 21 21 C 1.38813 * 119.99686 * 187.55568 * 19 18 17 22 22 N 1.31616 * 120.00311 * 174.37868 * 21 19 18 23 23 Si 1.86810 * 119.99981 * 354.38142 * 21 19 18 24 24 H 1.48499 * 109.46858 * 174.94995 * 23 21 19 25 25 H 1.48498 * 109.46907 * 294.94478 * 23 21 19 26 26 H 1.48495 * 109.47036 * 54.94533 * 23 21 19 27 27 C 1.47066 * 87.88390 * 27.34185 * 18 17 16 28 28 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 29 29 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 31 31 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 32 32 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 33 33 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 34 34 H 1.09000 * 109.47179 * 299.99607 * 8 7 5 35 35 H 1.09005 * 109.47635 * 59.99656 * 8 7 5 36 36 H 1.09009 * 109.46906 * 300.00165 * 9 8 7 37 37 H 1.09005 * 109.46785 * 59.99299 * 9 8 7 38 38 H 1.09000 * 109.46669 * 299.99638 * 10 9 8 39 39 H 1.08998 * 109.47254 * 59.99715 * 10 9 8 40 40 H 1.09000 * 109.47230 * 300.00070 * 11 10 9 41 41 H 1.08998 * 109.47072 * 59.99935 * 11 10 9 42 42 H 0.96998 * 119.99622 * 0.02562 * 13 12 11 43 43 H 0.96997 * 119.99333 * 180.02562 * 13 12 11 44 44 H 1.08998 * 113.41116 * 286.79710 * 16 2 1 45 45 H 1.09003 * 113.46770 * 332.73878 * 17 16 2 46 46 H 1.09004 * 113.52153 * 202.31032 * 17 16 2 47 47 H 0.96998 * 119.99357 * 354.81763 * 22 21 19 48 48 H 1.08996 * 113.46631 * 87.44126 * 27 18 17 49 49 H 1.09001 * 113.46561 * 217.88042 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7019 0.2546 4.7585 9 6 3.2118 -0.4666 6.0078 10 6 3.2644 0.5167 7.1787 11 6 3.7737 -0.2048 8.4281 12 16 3.8368 0.9614 9.8162 13 7 4.3984 0.0606 11.0874 14 8 4.8491 1.9356 9.6035 15 8 2.5248 1.3414 10.2081 16 6 2.0399 -0.7213 -1.2493 17 6 1.5898 -0.0846 -2.5714 18 7 2.7723 0.7864 -2.4946 19 6 3.1104 2.0324 -2.9512 20 1 2.3637 2.6574 -3.4180 21 6 4.4131 2.4918 -2.8140 22 7 4.7655 3.6412 -3.3498 23 14 5.6662 1.4788 -1.8688 24 1 7.0008 2.1220 -1.9706 25 1 5.2629 1.3987 -0.4418 26 1 5.7308 0.1107 -2.4425 27 6 3.4340 -0.2723 -1.7172 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6318 1.1526 32 1 1.9776 -1.5509 3.8325 33 1 3.6492 -1.1205 3.3978 34 1 3.3744 1.0766 4.5132 35 1 1.7027 0.6469 4.9483 36 1 2.5390 -1.2885 6.2530 37 1 4.2109 -0.8593 5.8183 38 1 3.9375 1.3381 6.9333 39 1 2.2656 0.9097 7.3683 40 1 3.1004 -1.0261 8.6733 41 1 4.7725 -0.5980 8.2388 42 1 4.6064 -0.8784 10.9618 43 1 4.5192 0.4722 11.9574 44 1 1.9117 -1.8029 -1.2076 45 1 0.6466 0.4562 -2.4938 46 1 1.6122 -0.7736 -3.4158 47 1 4.1374 4.1309 -3.9035 48 1 3.9431 -1.0113 -2.3358 49 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734130660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:30 Heat of formation + Delta-G solvation = -110.422056 kcal Electronic energy + Delta-G solvation = -28115.358879 eV Core-core repulsion = 24011.334696 eV Total energy + Delta-G solvation = -4104.024183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21966 -40.04845 -38.04217 -37.14862 -36.93677 -36.10915 -34.53040 -33.99082 -33.54012 -31.78034 -29.66325 -28.51312 -26.96689 -25.40818 -24.22168 -22.95484 -22.02879 -21.31239 -20.52719 -20.30943 -19.44279 -18.49068 -18.16855 -17.87372 -17.61127 -17.29821 -16.95850 -16.72816 -16.23681 -16.02198 -15.83530 -15.73599 -15.20107 -14.76726 -14.74662 -14.47679 -14.31974 -13.67907 -13.47690 -13.38691 -13.21179 -13.16858 -13.12929 -13.03958 -12.94850 -12.82946 -12.70448 -12.57415 -12.22838 -12.05872 -12.04810 -12.01004 -11.68605 -11.42683 -11.41811 -11.30840 -11.23564 -11.06644 -10.90345 -10.71959 -10.03187 -9.20177 -8.62793 -5.46891 -0.68741 1.30812 1.43923 1.62391 1.75314 2.01572 2.26172 2.51754 2.75067 3.03346 3.20104 3.43990 3.45935 3.54348 3.80476 3.86917 3.92348 3.97282 4.20191 4.34680 4.38159 4.40805 4.53560 4.55500 4.61278 4.62457 4.68023 4.74325 4.74681 4.77074 4.85851 4.87331 4.92492 4.96627 5.13494 5.15789 5.20468 5.27755 5.31441 5.37438 5.42017 5.49849 5.66511 5.94800 6.40862 6.69619 6.70321 7.32988 7.42790 8.28375 8.89014 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.001852 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.343240 B =15118.087458 C =16166.416452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.166 3.834 3 H 0.036 0.964 4 N -0.711 5.711 5 C 0.496 3.504 6 O -0.598 6.598 7 C -0.127 4.127 8 C -0.115 4.115 9 C -0.100 4.100 10 C -0.133 4.133 11 C -0.590 4.590 12 S 2.613 3.387 13 N -1.239 6.239 14 O -1.017 7.017 15 O -1.014 7.014 16 C -0.105 4.105 17 C 0.123 3.877 18 N -0.664 5.664 19 C -0.283 4.283 20 H 0.045 0.955 21 C -0.094 4.094 22 N -0.975 5.975 23 Si 1.114 2.886 24 H -0.307 1.307 25 H -0.287 1.287 26 H -0.248 1.248 27 C 0.089 3.911 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.420 0.580 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.429 0.571 43 H 0.423 0.577 44 H 0.139 0.861 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.244 0.756 48 H 0.067 0.933 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -24.957 27.949 37.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.061 3.939 3 H 0.054 0.946 4 N -0.364 5.364 5 C 0.285 3.715 6 O -0.479 6.479 7 C -0.167 4.167 8 C -0.154 4.154 9 C -0.139 4.139 10 C -0.172 4.172 11 C -0.723 4.723 12 S 2.709 3.291 13 N -0.916 5.916 14 O -1.006 7.006 15 O -1.003 7.003 16 C -0.124 4.124 17 C -0.002 4.002 18 N -0.394 5.394 19 C -0.411 4.411 20 H 0.063 0.937 21 C -0.285 4.285 22 N -0.621 5.621 23 Si 0.941 3.059 24 H -0.235 1.235 25 H -0.215 1.215 26 H -0.173 1.173 27 C -0.035 4.035 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.257 0.743 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.190 0.810 41 H 0.186 0.814 42 H 0.258 0.742 43 H 0.253 0.747 44 H 0.156 0.844 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.587 -22.847 28.359 36.509 hybrid contribution -1.304 0.381 -1.238 1.838 sum -3.891 -22.466 27.121 35.432 Atomic orbital electron populations 1.21997 0.93806 1.03389 1.01242 1.20336 0.94641 0.95395 0.83566 0.94591 1.45951 1.66978 1.14737 1.08687 1.21739 0.76605 0.87004 0.86180 1.90725 1.52222 1.18957 1.85993 1.21730 1.05057 0.99770 0.90124 1.21406 1.01588 0.97906 0.94463 1.21518 1.03607 0.97647 0.91113 1.21482 1.02320 0.99444 0.93955 1.30153 1.14222 1.15783 1.12137 1.04366 0.72963 0.75355 0.76373 1.52760 1.86745 1.25149 1.26980 1.93571 1.60294 1.60375 1.86352 1.93566 1.42333 1.82576 1.81828 1.23003 0.95119 1.01130 0.93137 1.22676 0.90807 0.91352 0.95370 1.46136 1.16406 1.12398 1.64437 1.19982 0.95284 0.90853 1.35007 0.93666 1.27090 0.98795 0.99799 1.02812 1.71009 1.37746 1.16847 1.36519 0.83200 0.72908 0.74980 0.74825 1.23541 1.21511 1.17283 1.23106 0.96420 0.90190 0.93826 0.92339 0.89061 0.94119 0.74258 0.85027 0.86327 0.93870 0.92708 0.88578 0.89390 0.91295 0.90665 0.80966 0.81371 0.74162 0.74717 0.84388 0.93444 0.91659 0.94679 0.91581 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.29 71.98 0.67 -3.16 16 2 C 0.17 5.09 2.43 44.99 0.11 5.20 16 3 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 4 N -0.71 -16.16 5.08 -442.52 -2.25 -18.41 16 5 C 0.50 13.17 7.79 87.65 0.68 13.85 16 6 O -0.60 -23.58 15.64 -3.04 -0.05 -23.63 16 7 C -0.13 -1.79 5.70 29.85 0.17 -1.62 16 8 C -0.12 -1.97 4.50 30.59 0.14 -1.83 16 9 C -0.10 -0.83 5.21 30.59 0.16 -0.67 16 10 C -0.13 -1.41 5.22 30.59 0.16 -1.25 16 11 C -0.59 -1.94 6.09 71.98 0.44 -1.50 16 12 S 2.61 30.81 5.97 -56.49 -0.34 30.47 16 13 N -1.24 -4.73 9.43 37.02 0.35 -4.39 16 14 O -1.02 -22.52 18.10 -127.65 -2.31 -24.83 16 15 O -1.01 -21.45 18.10 -127.65 -2.31 -23.76 16 16 C -0.10 -2.92 3.73 -10.37 -0.04 -2.96 16 17 C 0.12 4.35 8.08 83.17 0.67 5.02 16 18 N -0.66 -32.20 3.49 -738.03 -2.58 -34.77 16 19 C -0.28 -17.22 11.08 84.03 0.93 -16.29 16 20 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 21 C -0.09 -5.93 5.50 84.86 0.47 -5.46 16 22 N -0.98 -66.36 13.70 21.65 0.30 -66.07 16 23 Si 1.11 56.37 25.16 68.60 1.73 58.09 16 24 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 25 H -0.29 -14.05 6.51 99.48 0.65 -13.40 16 26 H -0.25 -10.77 6.20 99.48 0.62 -10.16 16 27 C 0.09 3.39 5.24 83.26 0.44 3.83 16 28 H 0.06 1.64 6.50 -2.39 -0.02 1.63 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.42 5.40 8.60 -92.71 -0.80 4.61 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 35 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 36 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.17 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.17 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.43 -1.66 8.83 -96.75 -0.85 -2.51 16 43 H 0.42 1.54 8.96 -96.75 -0.87 0.67 16 44 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 1.68 6.43 -2.39 -0.02 1.67 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.24 16.69 8.73 -92.71 -0.81 15.88 16 48 H 0.07 2.29 7.66 -2.39 -0.02 2.27 16 49 H 0.04 1.55 4.71 -2.39 -0.01 1.54 16 Total: -1.00 -105.76 404.11 -4.20 -109.96 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -1.73 Total: 4.19 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.99 Total: -6.85 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -4.18 Total: -123.64 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: -4.67 Total: -72.23 kcal Atomic # 14 Polarization: 56.37 SS G_CDS: 1.73 Total: 58.09 kcal Atomic # 16 Polarization: 30.81 SS G_CDS: -0.34 Total: 30.47 kcal Total: -105.76 -4.20 -109.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734130660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -105.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds