Wall clock time and date at job start Wed Apr 1 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47251 * 2 1 4 4 N 1.46498 * 109.47212 * 240.00004 * 2 1 3 5 5 C 1.34775 * 120.00293 * 84.72744 * 4 2 1 6 6 O 1.21281 * 119.99951 * 0.26984 * 5 4 2 7 7 C 1.50695 * 120.00062 * 180.27698 * 5 4 2 8 8 C 1.52999 * 109.47089 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47289 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47515 * 180.02562 * 10 9 8 12 12 S 1.81395 * 109.47387 * 180.02562 * 11 10 9 13 13 N 1.65605 * 104.44917 * 179.97438 * 12 11 10 14 14 O 1.42099 * 110.54176 * 291.62241 * 12 11 10 15 15 O 1.42104 * 110.54225 * 68.37686 * 12 11 10 16 16 C 1.53003 * 109.46822 * 119.99887 * 2 1 3 17 17 C 1.53947 * 113.74189 * 281.81993 * 16 2 1 18 18 N 1.47815 * 86.03781 * 222.08698 * 17 16 2 19 19 C 1.36928 * 134.45806 * 204.64708 * 18 17 16 20 20 H 1.08002 * 120.00471 * 179.86268 * 19 18 17 21 21 C 1.38811 * 119.99984 * 359.86280 * 19 18 17 22 22 N 1.31617 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47463 * 59.99709 * 23 21 19 25 25 H 1.48500 * 109.47255 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47014 * 300.00046 * 23 21 19 27 27 C 1.47581 * 91.04841 * 24.54942 * 18 17 16 28 28 H 1.09003 * 109.46745 * 59.99731 * 1 2 3 29 29 H 1.08991 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47264 * 300.00247 * 1 2 3 31 31 H 0.96999 * 119.99641 * 265.00042 * 4 2 1 32 32 H 1.09002 * 109.47138 * 299.99836 * 7 5 4 33 33 H 1.09001 * 109.47311 * 59.99691 * 7 5 4 34 34 H 1.09002 * 109.47341 * 300.00133 * 8 7 5 35 35 H 1.09001 * 109.46952 * 59.99892 * 8 7 5 36 36 H 1.09002 * 109.47300 * 300.00479 * 9 8 7 37 37 H 1.09001 * 109.46950 * 60.00211 * 9 8 7 38 38 H 1.09002 * 109.47341 * 300.00454 * 10 9 8 39 39 H 1.09001 * 109.46952 * 60.00213 * 10 9 8 40 40 H 1.09002 * 109.46910 * 300.00379 * 11 10 9 41 41 H 1.09001 * 109.47113 * 59.99973 * 11 10 9 42 42 H 0.96997 * 119.99842 * 0.02562 * 13 12 11 43 43 H 0.96995 * 120.00196 * 180.02562 * 13 12 11 44 44 H 1.08998 * 112.94394 * 53.41048 * 16 2 1 45 45 H 1.08999 * 113.76687 * 336.35076 * 17 16 2 46 46 H 1.08994 * 113.76782 * 107.74406 * 17 16 2 47 47 H 0.97006 * 119.99925 * 179.97438 * 22 21 19 48 48 H 1.09004 * 113.77140 * 221.15362 * 27 18 17 49 49 H 1.09000 * 113.87306 * 89.77388 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1419 -0.0197 -2.3585 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 6 2.6840 0.2499 -4.7631 9 6 3.1886 -0.4727 -6.0137 10 6 3.2337 0.5087 -7.1866 11 6 3.7378 -0.2141 -8.4374 12 16 3.7919 0.9497 -9.8278 13 7 4.3483 0.0477 -11.1003 14 8 2.4775 1.3273 -10.2135 15 8 4.8040 1.9258 -9.6219 16 6 2.0400 -0.7213 1.2493 17 6 1.9744 0.1330 2.5283 18 7 3.3098 -0.4178 2.8417 19 6 4.0193 -0.6144 3.9962 20 1 5.0065 -1.0505 3.9558 21 6 3.4698 -0.2531 5.2187 22 7 2.2665 0.2779 5.2680 23 14 4.4380 -0.5205 6.7936 24 1 5.7078 0.2467 6.7305 25 1 3.6352 -0.0555 7.9532 26 1 4.7403 -1.9661 6.9494 27 6 3.5701 -0.6730 1.4116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 -1.1525 32 1 3.6383 -1.1238 -3.4052 33 1 1.9645 -1.5538 -3.8312 34 1 1.6839 0.6418 -4.9482 35 1 3.3577 1.0724 -4.5225 36 1 4.1889 -0.8643 -5.8284 37 1 2.5153 -1.2953 -6.2545 38 1 2.2333 0.8999 -7.3717 39 1 3.9068 1.3316 -6.9460 40 1 4.7381 -0.6056 -8.2525 41 1 3.0644 -1.0368 -8.6778 42 1 4.5577 -0.8910 -10.9744 43 1 4.4648 0.4580 -11.9714 44 1 1.6175 -1.7192 1.3660 45 1 1.9751 1.2066 2.3401 46 1 1.1953 -0.1775 3.2245 47 1 1.8823 0.5301 6.1224 48 1 4.0627 -1.6258 1.2179 49 1 4.0408 0.1622 0.8931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734130661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:36 Heat of formation + Delta-G solvation = -83.037648 kcal Electronic energy + Delta-G solvation = -27474.674142 eV Core-core repulsion = 23371.837436 eV Total energy + Delta-G solvation = -4102.836706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.86099 -38.12344 -37.45611 -36.59702 -36.35525 -34.76692 -33.72773 -32.93504 -32.13198 -30.53943 -27.92703 -27.46471 -24.85288 -24.17595 -23.38284 -21.73163 -21.03256 -20.21953 -19.90345 -19.03580 -18.11510 -17.78392 -16.92702 -16.87142 -16.69711 -16.13111 -15.92590 -15.81659 -15.21221 -14.79490 -14.34474 -13.96983 -13.95707 -13.89880 -13.52450 -13.19657 -12.84540 -12.63622 -12.61894 -12.54083 -12.40428 -12.32693 -12.11103 -11.99058 -11.59534 -11.52522 -11.51672 -11.39523 -11.21298 -10.98175 -10.95806 -10.91748 -10.86989 -10.67920 -10.35570 -10.05845 -9.81602 -9.56874 -9.39981 -8.82614 -8.77740 -6.87427 -5.76539 -3.08688 -0.28733 2.34398 2.76411 3.11819 3.31073 3.39384 3.43447 3.44882 3.73428 3.89922 4.32537 4.40095 4.45346 4.66508 4.67275 4.76847 4.98368 5.07112 5.12860 5.16088 5.21005 5.38059 5.38745 5.41106 5.42506 5.47199 5.55201 5.57540 5.67166 5.82976 5.91414 6.01022 6.06475 6.09592 6.29229 6.35823 6.44996 6.46108 6.60819 6.64083 6.82906 7.22553 7.36518 7.55725 7.68029 7.98376 8.37836 9.04742 9.71154 10.60569 11.40624 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.001382 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.948096 B =20250.414626 C =20777.051442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.086 0.914 4 N -0.721 5.721 5 C 0.508 3.492 6 O -0.545 6.545 7 C -0.141 4.141 8 C -0.109 4.109 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.618 4.618 12 S 2.611 3.389 13 N -1.254 6.254 14 O -0.963 6.963 15 O -0.962 6.962 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.285 1.285 27 C 0.126 3.874 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.412 0.588 43 H 0.419 0.581 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.254 0.746 48 H 0.039 0.961 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -7.239 -31.777 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.371 5.371 5 C 0.295 3.705 6 O -0.422 6.422 7 C -0.181 4.181 8 C -0.147 4.147 9 C -0.150 4.150 10 C -0.154 4.154 11 C -0.748 4.748 12 S 2.703 3.297 13 N -0.927 5.927 14 O -0.952 6.952 15 O -0.951 6.951 16 C -0.167 4.167 17 C 0.049 3.951 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.238 0.762 43 H 0.249 0.751 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.404 -5.301 -31.325 31.773 hybrid contribution 0.976 -1.517 0.859 1.998 sum 1.380 -6.819 -30.466 31.250 Atomic orbital electron populations 1.22102 0.95566 1.01665 1.02225 1.21096 0.93709 0.97462 0.83258 0.89588 1.46181 1.67015 1.14061 1.09837 1.20650 0.77688 0.87478 0.84726 1.90701 1.50204 1.16120 1.85217 1.21678 1.03159 0.99769 0.93531 1.21375 1.03108 0.97957 0.92260 1.21562 1.02121 0.97801 0.93485 1.21365 1.02773 0.98991 0.92252 1.30404 1.11420 1.16843 1.16170 1.04847 0.74582 0.74915 0.75370 1.53167 1.87416 1.24451 1.27625 1.93626 1.40110 1.80927 1.80551 1.93631 1.59209 1.56947 1.85355 1.23842 0.97527 1.00682 0.94607 1.22232 0.89600 0.93897 0.89345 1.45976 1.16351 1.71879 0.99619 1.18973 0.98462 1.34947 0.82862 0.90391 1.24778 0.97057 1.01091 0.97485 1.69799 1.15330 1.47206 1.24501 0.86205 0.78897 0.77805 0.82865 1.21213 1.21522 1.21117 1.22522 0.93101 0.97571 0.86832 0.92889 0.92852 0.91164 0.76864 0.88931 0.89098 0.90851 0.90751 0.91269 0.91361 0.89839 0.89783 0.84558 0.84592 0.76248 0.75084 0.89417 0.95435 0.90719 0.93575 0.94238 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.44 37.16 0.35 -1.85 16 2 C 0.15 2.27 2.29 -67.93 -0.16 2.11 16 3 H 0.09 1.54 7.49 -51.93 -0.39 1.15 16 4 N -0.72 -8.76 4.95 -53.80 -0.27 -9.03 16 5 C 0.51 6.39 7.79 -10.99 -0.09 6.30 16 6 O -0.54 -9.16 15.65 5.56 0.09 -9.07 16 7 C -0.14 -1.11 5.70 -27.89 -0.16 -1.27 16 8 C -0.11 -0.87 4.50 -26.73 -0.12 -0.99 16 9 C -0.11 -0.57 5.21 -26.73 -0.14 -0.71 16 10 C -0.11 -0.60 5.22 -26.73 -0.14 -0.74 16 11 C -0.62 -1.63 6.09 37.16 0.23 -1.41 16 12 S 2.61 14.21 5.97 -107.50 -0.64 13.57 16 13 N -1.25 -2.72 9.43 60.35 0.57 -2.15 16 14 O -0.96 -9.29 18.10 -57.54 -1.04 -10.33 16 15 O -0.96 -9.43 18.10 -57.54 -1.04 -10.47 16 16 C -0.15 -2.59 3.35 -89.69 -0.30 -2.89 16 17 C 0.18 4.05 6.98 -2.84 -0.02 4.04 16 18 N -0.61 -15.69 3.70 -177.68 -0.66 -16.35 16 19 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -27.33 11.39 55.49 0.63 -26.69 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.13 2.52 8.37 -2.97 -0.02 2.49 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.14 0.08 8.14 -51.92 -0.42 -0.34 16 41 H 0.14 0.06 8.14 -51.92 -0.42 -0.36 16 42 H 0.41 -0.40 8.83 -34.47 -0.30 -0.70 16 43 H 0.42 0.74 8.96 -34.48 -0.31 0.43 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 46 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -40.55 414.62 -10.40 -50.95 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.44 Total: -2.08 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.82 Total: -1.73 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.28 Total: -54.22 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -2.00 Total: -29.88 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 14.21 SS G_CDS: -0.64 Total: 13.57 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -40.55 -10.40 -50.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734130661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.087 kcal (2) G-P(sol) polarization free energy of solvation -40.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds