Wall clock time and date at job start Wed Apr 1 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47251 * 2 1 4 4 N 1.46498 * 109.47212 * 240.00004 * 2 1 3 5 5 C 1.34775 * 120.00293 * 84.72744 * 4 2 1 6 6 O 1.21281 * 119.99951 * 0.26984 * 5 4 2 7 7 C 1.50695 * 120.00062 * 180.27698 * 5 4 2 8 8 C 1.52999 * 109.47089 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47289 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47289 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47515 * 180.02562 * 10 9 8 12 12 S 1.81395 * 109.47387 * 180.02562 * 11 10 9 13 13 N 1.65605 * 104.44917 * 179.97438 * 12 11 10 14 14 O 1.42099 * 110.54176 * 291.62241 * 12 11 10 15 15 O 1.42104 * 110.54225 * 68.37686 * 12 11 10 16 16 C 1.53003 * 109.46822 * 119.99887 * 2 1 3 17 17 C 1.53947 * 113.74189 * 281.81993 * 16 2 1 18 18 N 1.47815 * 86.03781 * 222.08698 * 17 16 2 19 19 C 1.36928 * 134.45806 * 204.64708 * 18 17 16 20 20 H 1.08002 * 120.00471 * 179.86268 * 19 18 17 21 21 C 1.38811 * 119.99984 * 359.86280 * 19 18 17 22 22 N 1.31617 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00168 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47463 * 59.99709 * 23 21 19 25 25 H 1.48500 * 109.47255 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47014 * 300.00046 * 23 21 19 27 27 C 1.47581 * 91.04841 * 24.54942 * 18 17 16 28 28 H 1.09003 * 109.46745 * 59.99731 * 1 2 3 29 29 H 1.08991 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47264 * 300.00247 * 1 2 3 31 31 H 0.96999 * 119.99641 * 265.00042 * 4 2 1 32 32 H 1.09002 * 109.47138 * 299.99836 * 7 5 4 33 33 H 1.09001 * 109.47311 * 59.99691 * 7 5 4 34 34 H 1.09002 * 109.47341 * 300.00133 * 8 7 5 35 35 H 1.09001 * 109.46952 * 59.99892 * 8 7 5 36 36 H 1.09002 * 109.47300 * 300.00479 * 9 8 7 37 37 H 1.09001 * 109.46950 * 60.00211 * 9 8 7 38 38 H 1.09002 * 109.47341 * 300.00454 * 10 9 8 39 39 H 1.09001 * 109.46952 * 60.00213 * 10 9 8 40 40 H 1.09002 * 109.46910 * 300.00379 * 11 10 9 41 41 H 1.09001 * 109.47113 * 59.99973 * 11 10 9 42 42 H 0.96997 * 119.99842 * 0.02562 * 13 12 11 43 43 H 0.96995 * 120.00196 * 180.02562 * 13 12 11 44 44 H 1.08998 * 112.94394 * 53.41048 * 16 2 1 45 45 H 1.08999 * 113.76687 * 336.35076 * 17 16 2 46 46 H 1.08994 * 113.76782 * 107.74406 * 17 16 2 47 47 H 0.97006 * 119.99925 * 179.97438 * 22 21 19 48 48 H 1.09004 * 113.77140 * 221.15362 * 27 18 17 49 49 H 1.09000 * 113.87306 * 89.77388 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1419 -0.0197 -2.3585 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 6 2.6840 0.2499 -4.7631 9 6 3.1886 -0.4727 -6.0137 10 6 3.2337 0.5087 -7.1866 11 6 3.7378 -0.2141 -8.4374 12 16 3.7919 0.9497 -9.8278 13 7 4.3483 0.0477 -11.1003 14 8 2.4775 1.3273 -10.2135 15 8 4.8040 1.9258 -9.6219 16 6 2.0400 -0.7213 1.2493 17 6 1.9744 0.1330 2.5283 18 7 3.3098 -0.4178 2.8417 19 6 4.0193 -0.6144 3.9962 20 1 5.0065 -1.0505 3.9558 21 6 3.4698 -0.2531 5.2187 22 7 2.2665 0.2779 5.2680 23 14 4.4380 -0.5205 6.7936 24 1 5.7078 0.2467 6.7305 25 1 3.6352 -0.0555 7.9532 26 1 4.7403 -1.9661 6.9494 27 6 3.5701 -0.6730 1.4116 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 -1.1525 32 1 3.6383 -1.1238 -3.4052 33 1 1.9645 -1.5538 -3.8312 34 1 1.6839 0.6418 -4.9482 35 1 3.3577 1.0724 -4.5225 36 1 4.1889 -0.8643 -5.8284 37 1 2.5153 -1.2953 -6.2545 38 1 2.2333 0.8999 -7.3717 39 1 3.9068 1.3316 -6.9460 40 1 4.7381 -0.6056 -8.2525 41 1 3.0644 -1.0368 -8.6778 42 1 4.5577 -0.8910 -10.9744 43 1 4.4648 0.4580 -11.9714 44 1 1.6175 -1.7192 1.3660 45 1 1.9751 1.2066 2.3401 46 1 1.1953 -0.1775 3.2245 47 1 1.8823 0.5301 6.1224 48 1 4.0627 -1.6258 1.2179 49 1 4.0408 0.1622 0.8931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734130661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:35 Heat of formation + Delta-G solvation = -116.700105 kcal Electronic energy + Delta-G solvation = -27476.133856 eV Core-core repulsion = 23371.837436 eV Total energy + Delta-G solvation = -4104.296420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00382 -39.65200 -38.02822 -37.12113 -36.92200 -36.08417 -34.14763 -33.97943 -33.48850 -31.74570 -29.35650 -28.45307 -26.54225 -25.72689 -24.26129 -22.68033 -21.94353 -21.31743 -20.54947 -20.29631 -18.77941 -18.47404 -18.15555 -17.78401 -17.32235 -17.21906 -16.83557 -16.66789 -16.22599 -15.91349 -15.80022 -15.41964 -14.89628 -14.82181 -14.44092 -14.32896 -14.04590 -13.45164 -13.37463 -13.26929 -13.18273 -13.11891 -13.08554 -13.02685 -12.95904 -12.93640 -12.65887 -12.56851 -12.38919 -12.03888 -12.01665 -11.97162 -11.79211 -11.56923 -11.40039 -11.39480 -11.22563 -11.20847 -10.85915 -10.67171 -9.96014 -8.92378 -7.90552 -5.24279 -0.67509 1.45154 1.48734 1.54944 1.79797 2.02497 2.30744 2.47639 2.76059 3.29616 3.39843 3.47012 3.54141 3.71491 3.91474 3.94381 3.99867 4.02471 4.22812 4.29471 4.41992 4.46391 4.57306 4.58173 4.63684 4.77635 4.78200 4.84909 4.86868 4.91126 4.95423 4.96757 4.98934 5.15178 5.17108 5.24865 5.30631 5.32442 5.40607 5.51661 5.53723 5.62715 5.67479 5.93801 6.41443 6.73422 6.91451 7.43302 7.60811 8.56680 9.26226 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027773 B = 0.001382 C = 0.001347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.948096 B =20250.414626 C =20777.051442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.054 0.946 4 N -0.710 5.710 5 C 0.502 3.498 6 O -0.595 6.595 7 C -0.130 4.130 8 C -0.112 4.112 9 C -0.103 4.103 10 C -0.131 4.131 11 C -0.591 4.591 12 S 2.613 3.387 13 N -1.240 6.240 14 O -1.014 7.014 15 O -1.015 7.015 16 C -0.107 4.107 17 C 0.168 3.832 18 N -0.644 5.644 19 C -0.239 4.239 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.980 3.020 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.129 3.871 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.428 0.572 43 H 0.422 0.578 44 H 0.106 0.894 45 H 0.008 0.992 46 H 0.046 0.954 47 H 0.248 0.752 48 H 0.065 0.935 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -10.934 -33.208 35.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.055 3.945 3 H 0.072 0.928 4 N -0.362 5.362 5 C 0.291 3.709 6 O -0.476 6.476 7 C -0.170 4.170 8 C -0.151 4.151 9 C -0.141 4.141 10 C -0.171 4.171 11 C -0.725 4.725 12 S 2.710 3.290 13 N -0.917 5.917 14 O -1.003 7.003 15 O -1.004 7.004 16 C -0.127 4.127 17 C 0.042 3.958 18 N -0.370 5.370 19 C -0.367 4.367 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.198 1.198 27 C 0.004 3.996 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.186 0.814 41 H 0.188 0.812 42 H 0.258 0.742 43 H 0.253 0.747 44 H 0.125 0.875 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.534 -9.035 -32.832 34.087 hybrid contribution 0.655 -0.377 1.283 1.489 sum 2.189 -9.412 -31.549 32.995 Atomic orbital electron populations 1.22027 0.94401 1.02892 1.01575 1.20676 0.94487 0.95731 0.83627 0.92796 1.45996 1.66710 1.14781 1.08719 1.21582 0.76508 0.87023 0.85791 1.90693 1.52297 1.18593 1.85984 1.21729 1.05009 0.99789 0.90445 1.21382 1.01715 0.97884 0.94070 1.21525 1.03544 0.97673 0.91379 1.21480 1.02396 0.99427 0.93751 1.30168 1.14196 1.15782 1.12304 1.04368 0.72969 0.75338 0.76366 1.52774 1.86873 1.25213 1.26851 1.93567 1.42154 1.82630 1.81951 1.93571 1.60265 1.60204 1.86397 1.23431 0.96007 1.00272 0.92966 1.22144 0.88280 0.93618 0.91759 1.46420 1.17274 1.72081 1.01255 1.19417 0.98863 1.34233 0.84218 0.89816 1.25648 0.98139 1.01522 1.00750 1.70001 1.16920 1.48650 1.24685 0.85142 0.77384 0.78166 0.78565 1.20637 1.22058 1.19804 1.22665 0.94824 0.98443 0.83682 0.93120 0.90606 0.92307 0.74751 0.86376 0.85793 0.92674 0.93171 0.89433 0.89074 0.90662 0.90944 0.81402 0.81203 0.74188 0.74721 0.87550 0.97452 0.93574 0.94262 0.91726 0.95241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.44 71.98 0.68 -3.39 16 2 C 0.16 4.76 2.29 44.99 0.10 4.86 16 3 H 0.05 1.98 7.49 -2.38 -0.02 1.96 16 4 N -0.71 -15.54 4.95 -442.53 -2.19 -17.73 16 5 C 0.50 11.74 7.79 87.66 0.68 12.43 16 6 O -0.59 -20.17 15.65 -3.03 -0.05 -20.22 16 7 C -0.13 -1.59 5.70 29.85 0.17 -1.42 16 8 C -0.11 -1.60 4.50 30.59 0.14 -1.47 16 9 C -0.10 -0.68 5.21 30.59 0.16 -0.52 16 10 C -0.13 -1.13 5.22 30.60 0.16 -0.97 16 11 C -0.59 -1.19 6.09 71.98 0.44 -0.76 16 12 S 2.61 27.11 5.97 -56.49 -0.34 26.77 16 13 N -1.24 -3.48 9.43 37.02 0.35 -3.13 16 14 O -1.01 -20.10 18.10 -127.65 -2.31 -22.41 16 15 O -1.02 -20.57 18.10 -127.65 -2.31 -22.88 16 16 C -0.11 -3.66 3.35 -10.13 -0.03 -3.69 16 17 C 0.17 7.99 6.98 86.44 0.60 8.60 16 18 N -0.64 -33.12 3.70 -716.06 -2.65 -35.77 16 19 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 22 N -0.95 -58.09 11.39 21.65 0.25 -57.85 16 23 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.13 4.96 8.37 86.49 0.72 5.69 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.71 8.09 -2.39 -0.02 1.70 16 31 H 0.42 6.24 8.60 -92.71 -0.80 5.44 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.43 -2.01 8.83 -96.75 -0.85 -2.87 16 43 H 0.42 1.11 8.96 -96.75 -0.87 0.24 16 44 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 46 H 0.05 2.44 7.16 -2.39 -0.02 2.42 16 47 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 48 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.03 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -93.42 414.62 -3.59 -97.01 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -1.56 Total: 5.02 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.19 Total: 3.32 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.24 Total: -114.48 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -4.67 Total: -65.52 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 27.11 SS G_CDS: -0.34 Total: 26.77 kcal Total: -93.42 -3.59 -97.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734130661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.688 kcal (2) G-P(sol) polarization free energy of solvation -93.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds