Wall clock time and date at job start Wed Apr 1 2020 05:10:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.70110 * 2 1
4 4 C 1.53188 * 109.58588 * 239.64343 * 2 1 3
5 5 H 1.09003 * 109.50070 * 65.62571 * 4 2 1
6 6 N 1.46496 * 109.50064 * 305.56097 * 4 2 1
7 7 C 1.34772 * 120.00503 * 155.00153 * 6 4 2
8 8 O 1.21283 * 119.99695 * 0.02562 * 7 6 4
9 9 C 1.50699 * 120.00676 * 180.02562 * 7 6 4
10 10 C 1.52998 * 109.47749 * 179.97438 * 9 7 6
11 11 S 1.81397 * 109.47441 * 179.97438 * 10 9 7
12 12 O 1.42094 * 110.54504 * 291.62662 * 11 10 9
13 13 O 1.42095 * 110.54101 * 68.37886 * 11 10 9
14 14 N 1.65601 * 104.44987 * 180.02562 * 11 10 9
15 15 C 1.46505 * 119.99695 * 90.00141 * 14 11 10
16 16 C 1.46497 * 120.00068 * 270.00096 * 14 11 10
17 17 C 1.53042 * 109.31124 * 185.57569 * 4 2 1
18 18 C 1.53041 * 109.53783 * 61.36913 * 17 4 2
19 19 C 1.53631 * 109.23773 * 298.51013 * 18 17 4
20 20 N 1.46927 * 108.54456 * 54.85909 * 19 18 17
21 21 C 1.36930 * 120.63369 * 126.37011 * 20 19 18
22 22 H 1.08002 * 120.00202 * 209.46636 * 21 20 19
23 23 C 1.38811 * 120.00029 * 29.17869 * 21 20 19
24 24 N 1.31621 * 119.99783 * 16.09518 * 23 21 20
25 25 Si 1.86802 * 120.00265 * 196.08647 * 23 21 20
26 26 H 1.48503 * 109.46818 * 60.00775 * 25 23 21
27 27 H 1.48500 * 109.46823 * 180.02562 * 25 23 21
28 28 H 1.48498 * 109.47259 * 300.00616 * 25 23 21
29 29 H 1.08998 * 109.47216 * 299.64389 * 1 2 3
30 30 H 1.09003 * 109.46935 * 59.64527 * 1 2 3
31 31 H 1.09006 * 109.46763 * 179.64417 * 1 2 3
32 32 H 0.97005 * 120.00150 * 334.99717 * 6 4 2
33 33 H 1.08998 * 109.46973 * 300.00406 * 9 7 6
34 34 H 1.09003 * 109.47163 * 59.99510 * 9 7 6
35 35 H 1.09002 * 109.46942 * 300.00452 * 10 9 7
36 36 H 1.09000 * 109.46686 * 60.00089 * 10 9 7
37 37 H 1.08996 * 109.47052 * 90.00232 * 15 14 11
38 38 H 1.09001 * 109.46568 * 210.00193 * 15 14 11
39 39 H 1.08999 * 109.47265 * 329.99579 * 15 14 11
40 40 H 1.09008 * 109.47056 * 89.99914 * 16 14 11
41 41 H 1.08996 * 109.47263 * 209.99973 * 16 14 11
42 42 H 1.09000 * 109.46992 * 330.00226 * 16 14 11
43 43 H 1.09006 * 109.46261 * 181.38317 * 17 4 2
44 44 H 1.08996 * 109.46321 * 301.35782 * 17 4 2
45 45 H 1.08998 * 109.49828 * 58.58418 * 18 17 4
46 46 H 1.08996 * 109.49778 * 178.68413 * 18 17 4
47 47 H 1.09001 * 109.74090 * 295.11519 * 19 18 17
48 48 H 1.09003 * 109.66358 * 174.55249 * 19 18 17
49 49 H 0.96995 * 120.00069 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0436 -0.7294 -1.2454
5 1 1.7660 -0.1669 -2.1368
6 7 1.4509 -2.0676 -1.3075
7 6 1.3279 -2.6959 -2.4935
8 8 1.7084 -2.1534 -3.5093
9 6 0.7176 -4.0723 -2.5575
10 6 0.6958 -4.5536 -4.0097
11 16 -0.0380 -6.2107 -4.0866
12 8 0.8175 -7.1640 -3.4715
13 8 -1.4226 -6.1580 -3.7713
14 7 0.0006 -6.6056 -5.6943
15 6 1.1665 -7.2962 -6.2512
16 6 -1.1311 -6.2643 -6.5598
17 6 3.5675 -0.8479 -1.1701
18 6 3.9570 -1.6657 0.0635
19 6 3.4656 -0.9419 1.3264
20 7 2.0225 -0.6995 1.1945
21 6 1.1537 -1.1126 2.1690
22 1 0.1392 -1.3781 1.9108
23 6 1.5786 -1.1958 3.4878
24 7 2.6870 -0.5921 3.8614
25 14 0.5773 -2.1641 4.7325
26 1 0.4818 -3.5805 4.2965
27 1 1.2399 -2.0980 6.0598
28 1 -0.7858 -1.5834 4.8307
29 1 -0.3633 0.5083 0.8931
30 1 -0.3633 0.5193 -0.8868
31 1 -0.3633 -1.0277 -0.0064
32 1 1.1469 -2.5017 -0.4950
33 1 1.3101 -4.7608 -1.9550
34 1 -0.3012 -4.0364 -2.1717
35 1 0.1031 -3.8650 -4.6118
36 1 1.7145 -4.5895 -4.3958
37 1 1.0201 -8.3737 -6.1772
38 1 1.2884 -7.0170 -7.2977
39 1 2.0583 -7.0114 -5.6930
40 1 -0.9762 -5.2733 -6.9866
41 1 -1.2086 -6.9975 -7.3626
42 1 -2.0504 -6.2681 -5.9742
43 1 3.9379 -1.3448 -2.0668
44 1 4.0061 0.1474 -1.0991
45 1 3.4984 -2.6528 0.0053
46 1 5.0412 -1.7695 0.1037
47 1 3.9877 0.0090 1.4324
48 1 3.6532 -1.5636 2.2019
49 1 2.9837 -0.6499 4.7831
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734455784.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:22
Heat of formation + Delta-G solvation = -85.133469 kcal
Electronic energy + Delta-G solvation = -30076.209823 eV
Core-core repulsion = 25973.282235 eV
Total energy + Delta-G solvation = -4102.927587 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.88 seconds
Orbital eigenvalues (eV)
-39.86988 -37.75442 -37.40638 -36.56935 -36.10527 -34.01633 -33.31080 -32.39066
-31.68818 -29.47092 -28.47021 -26.50752 -25.46100 -25.05208 -24.62707 -22.02370
-20.88021 -20.26218 -19.16566 -18.78723 -18.14897 -17.18566 -16.72230 -16.47014
-16.22859 -15.73934 -15.41249 -14.94617 -14.77311 -14.76273 -14.15151 -13.93482
-13.79628 -13.40493 -13.30790 -13.07271 -13.05594 -12.95588 -12.70351 -12.64691
-12.59443 -12.31469 -11.94595 -11.90403 -11.84961 -11.68824 -11.31440 -11.27736
-11.09540 -10.99192 -10.74088 -10.65344 -10.57127 -10.16310 -10.06665 -9.73698
-9.65516 -9.41216 -9.35156 -8.61758 -8.49811 -6.72624 -5.85563 -3.31105
-0.05927 2.30050 2.82085 3.33661 3.37945 3.40162 3.41086 3.67219
3.88048 4.16310 4.38520 4.42028 4.55386 4.89569 4.93683 4.99108
5.20510 5.22310 5.27146 5.28672 5.30746 5.40324 5.42463 5.50431
5.52999 5.57680 5.61293 5.69548 5.91021 6.07219 6.09641 6.17400
6.26682 6.36502 6.47680 6.61709 6.62388 6.72756 6.88509 6.92063
7.03900 7.32795 7.61331 7.73688 7.90955 8.37550 8.49906 9.13498
9.76539 10.33685 11.22331
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.014584 B = 0.002813 C = 0.002596
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.411569 B = 9950.607701 C =10783.250891
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.159 3.841
3 H 0.039 0.961
4 C 0.133 3.867
5 H 0.076 0.924
6 N -0.698 5.698
7 C 0.518 3.482
8 O -0.553 6.553
9 C -0.138 4.138
10 C -0.606 4.606
11 S 2.610 3.390
12 O -0.951 6.951
13 O -0.952 6.952
14 N -1.009 6.009
15 C 0.093 3.907
16 C 0.081 3.919
17 C -0.121 4.121
18 C -0.141 4.141
19 C 0.171 3.829
20 N -0.586 5.586
21 C -0.260 4.260
22 H 0.070 0.930
23 C 0.007 3.993
24 N -0.899 5.899
25 Si 0.900 3.100
26 H -0.283 1.283
27 H -0.291 1.291
28 H -0.283 1.283
29 H 0.064 0.936
30 H 0.039 0.961
31 H 0.053 0.947
32 H 0.410 0.590
33 H 0.108 0.892
34 H 0.108 0.892
35 H 0.138 0.862
36 H 0.137 0.863
37 H 0.059 0.941
38 H 0.072 0.928
39 H 0.072 0.928
40 H 0.055 0.945
41 H 0.075 0.925
42 H 0.085 0.915
43 H 0.049 0.951
44 H 0.062 0.938
45 H 0.053 0.947
46 H 0.047 0.953
47 H 0.018 0.982
48 H 0.086 0.914
49 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.333 -9.072 -19.370 21.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.052 3.948
3 H 0.057 0.943
4 C 0.027 3.973
5 H 0.094 0.906
6 N -0.349 5.349
7 C 0.302 3.698
8 O -0.432 6.432
9 C -0.180 4.180
10 C -0.736 4.736
11 S 2.703 3.297
12 O -0.941 6.941
13 O -0.942 6.942
14 N -0.848 5.848
15 C -0.052 4.052
16 C -0.064 4.064
17 C -0.159 4.159
18 C -0.180 4.180
19 C 0.046 3.954
20 N -0.310 5.310
21 C -0.389 4.389
22 H 0.088 0.912
23 C -0.192 4.192
24 N -0.543 5.543
25 Si 0.730 3.270
26 H -0.209 1.209
27 H -0.217 1.217
28 H -0.209 1.209
29 H 0.083 0.917
30 H 0.058 0.942
31 H 0.072 0.928
32 H 0.247 0.753
33 H 0.126 0.874
34 H 0.126 0.874
35 H 0.156 0.844
36 H 0.156 0.844
37 H 0.078 0.922
38 H 0.091 0.909
39 H 0.091 0.909
40 H 0.074 0.926
41 H 0.094 0.906
42 H 0.104 0.896
43 H 0.068 0.932
44 H 0.081 0.919
45 H 0.072 0.928
46 H 0.065 0.935
47 H 0.037 0.963
48 H 0.105 0.895
49 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -3.333 -9.218 -19.233 21.587
hybrid contribution -0.131 -0.023 0.724 0.736
sum -3.464 -9.241 -18.509 20.976
Atomic orbital electron populations
1.21789 0.95596 1.01437 1.00540 1.20723 0.93382 0.93908 0.86835
0.94303 1.21567 0.92946 0.82900 0.99877 0.90592 1.46011 1.61194
1.18744 1.08962 1.20062 0.79025 0.86751 0.83973 1.90650 1.50677
1.67338 1.34525 1.21371 1.04565 0.97687 0.94328 1.30398 1.15295
1.23628 1.04238 1.05156 0.74880 0.77031 0.72675 1.93609 1.69182
1.57193 1.74087 1.93589 1.31190 1.87401 1.82054 1.57350 1.26200
1.72500 1.28748 1.21493 0.86516 0.97250 0.99959 1.21631 0.88507
1.00870 0.95419 1.21770 0.95437 1.00506 0.98228 1.22221 0.98958
0.99536 0.97298 1.20895 0.83131 0.97130 0.94288 1.44178 1.03068
1.64906 1.18809 1.19100 0.95163 1.38393 0.86236 0.91203 1.25099
0.97795 0.99302 0.97006 1.70013 1.24138 1.43238 1.16905 0.86417
0.79598 0.80301 0.80701 1.20918 1.21714 1.20882 0.91677 0.94224
0.92778 0.75284 0.87386 0.87410 0.84358 0.84425 0.92215 0.90937
0.90889 0.92587 0.90638 0.89631 0.93195 0.91899 0.92807 0.93456
0.96344 0.89541 0.93532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 33.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.38 7.74 37.16 0.29 -2.10 16
2 C 0.16 3.04 3.20 -67.60 -0.22 2.82 16
3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
4 C 0.13 2.28 2.32 -67.81 -0.16 2.13 16
5 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16
6 N -0.70 -11.05 3.46 -53.69 -0.19 -11.24 16
7 C 0.52 7.76 7.80 -10.99 -0.09 7.67 16
8 O -0.55 -9.68 15.64 5.56 0.09 -9.59 16
9 C -0.14 -1.58 5.71 -27.88 -0.16 -1.74 16
10 C -0.61 -5.83 5.47 37.16 0.20 -5.63 16
11 S 2.61 26.54 5.38 -107.50 -0.58 25.96 16
12 O -0.95 -12.43 17.08 -57.54 -0.98 -13.41 16
13 O -0.95 -12.21 16.58 -57.54 -0.95 -13.17 16
14 N -1.01 -7.94 3.52 -129.20 -0.45 -8.40 16
15 C 0.09 0.58 10.20 59.85 0.61 1.19 16
16 C 0.08 0.50 10.64 59.85 0.64 1.13 16
17 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16
18 C -0.14 -2.59 5.95 -26.38 -0.16 -2.75 16
19 C 0.17 3.82 5.32 -3.48 -0.02 3.80 16
20 N -0.59 -13.13 2.64 -164.51 -0.43 -13.56 16
21 C -0.26 -6.38 8.57 -15.06 -0.13 -6.51 16
22 H 0.07 1.66 6.24 -52.49 -0.33 1.33 16
23 C 0.01 0.19 4.93 -17.43 -0.09 0.11 16
24 N -0.90 -24.84 11.22 55.49 0.62 -24.21 16
25 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16
26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
29 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16
30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16
32 H 0.41 6.60 7.77 -40.82 -0.32 6.28 16
33 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16
34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16
35 H 0.14 1.22 8.10 -51.92 -0.42 0.80 16
36 H 0.14 1.23 8.10 -51.92 -0.42 0.81 16
37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
38 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16
39 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16
40 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16
41 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16
42 H 0.09 0.59 6.91 -51.93 -0.36 0.23 16
43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
45 H 0.05 1.00 7.53 -51.93 -0.39 0.60 16
46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
48 H 0.09 2.18 6.12 -51.93 -0.32 1.86 16
49 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16
LS Contribution 395.85 15.07 5.97 5.97
Total: -1.00 -33.26 395.85 -9.64 -42.90
By element:
Atomic # 1 Polarization: 13.53 SS G_CDS: -8.28 Total: 5.25 kcal
Atomic # 6 Polarization: -2.68 SS G_CDS: 0.58 Total: -2.10 kcal
Atomic # 7 Polarization: -56.96 SS G_CDS: -0.45 Total: -57.41 kcal
Atomic # 8 Polarization: -34.32 SS G_CDS: -1.85 Total: -36.17 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal
Atomic # 16 Polarization: 26.54 SS G_CDS: -0.58 Total: 25.96 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -33.26 -9.64 -42.90 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734455784.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.230 kcal
(2) G-P(sol) polarization free energy of solvation -33.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.88 seconds