Wall clock time and date at job start Wed Apr 1 2020 05:10:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 109.70110 * 2 1
4 4 C 1.53188 * 109.58588 * 239.64343 * 2 1 3
5 5 H 1.09003 * 109.50070 * 65.62571 * 4 2 1
6 6 N 1.46496 * 109.50064 * 305.56097 * 4 2 1
7 7 C 1.34772 * 120.00503 * 155.00153 * 6 4 2
8 8 O 1.21283 * 119.99695 * 0.02562 * 7 6 4
9 9 C 1.50699 * 120.00676 * 180.02562 * 7 6 4
10 10 C 1.52998 * 109.47749 * 179.97438 * 9 7 6
11 11 S 1.81397 * 109.47441 * 179.97438 * 10 9 7
12 12 O 1.42094 * 110.54504 * 291.62662 * 11 10 9
13 13 O 1.42095 * 110.54101 * 68.37886 * 11 10 9
14 14 N 1.65601 * 104.44987 * 180.02562 * 11 10 9
15 15 C 1.46505 * 119.99695 * 90.00141 * 14 11 10
16 16 C 1.46497 * 120.00068 * 270.00096 * 14 11 10
17 17 C 1.53042 * 109.31124 * 185.57569 * 4 2 1
18 18 C 1.53041 * 109.53783 * 61.36913 * 17 4 2
19 19 C 1.53631 * 109.23773 * 298.51013 * 18 17 4
20 20 N 1.46927 * 108.54456 * 54.85909 * 19 18 17
21 21 C 1.36930 * 120.63369 * 126.37011 * 20 19 18
22 22 H 1.08002 * 120.00202 * 209.46636 * 21 20 19
23 23 C 1.38811 * 120.00029 * 29.17869 * 21 20 19
24 24 N 1.31621 * 119.99783 * 16.09518 * 23 21 20
25 25 Si 1.86802 * 120.00265 * 196.08647 * 23 21 20
26 26 H 1.48503 * 109.46818 * 60.00775 * 25 23 21
27 27 H 1.48500 * 109.46823 * 180.02562 * 25 23 21
28 28 H 1.48498 * 109.47259 * 300.00616 * 25 23 21
29 29 H 1.08998 * 109.47216 * 299.64389 * 1 2 3
30 30 H 1.09003 * 109.46935 * 59.64527 * 1 2 3
31 31 H 1.09006 * 109.46763 * 179.64417 * 1 2 3
32 32 H 0.97005 * 120.00150 * 334.99717 * 6 4 2
33 33 H 1.08998 * 109.46973 * 300.00406 * 9 7 6
34 34 H 1.09003 * 109.47163 * 59.99510 * 9 7 6
35 35 H 1.09002 * 109.46942 * 300.00452 * 10 9 7
36 36 H 1.09000 * 109.46686 * 60.00089 * 10 9 7
37 37 H 1.08996 * 109.47052 * 90.00232 * 15 14 11
38 38 H 1.09001 * 109.46568 * 210.00193 * 15 14 11
39 39 H 1.08999 * 109.47265 * 329.99579 * 15 14 11
40 40 H 1.09008 * 109.47056 * 89.99914 * 16 14 11
41 41 H 1.08996 * 109.47263 * 209.99973 * 16 14 11
42 42 H 1.09000 * 109.46992 * 330.00226 * 16 14 11
43 43 H 1.09006 * 109.46261 * 181.38317 * 17 4 2
44 44 H 1.08996 * 109.46321 * 301.35782 * 17 4 2
45 45 H 1.08998 * 109.49828 * 58.58418 * 18 17 4
46 46 H 1.08996 * 109.49778 * 178.68413 * 18 17 4
47 47 H 1.09001 * 109.74090 * 295.11519 * 19 18 17
48 48 H 1.09003 * 109.66358 * 174.55249 * 19 18 17
49 49 H 0.96995 * 120.00069 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0436 -0.7294 -1.2454
5 1 1.7660 -0.1669 -2.1368
6 7 1.4509 -2.0676 -1.3075
7 6 1.3279 -2.6959 -2.4935
8 8 1.7084 -2.1534 -3.5093
9 6 0.7176 -4.0723 -2.5575
10 6 0.6958 -4.5536 -4.0097
11 16 -0.0380 -6.2107 -4.0866
12 8 0.8175 -7.1640 -3.4715
13 8 -1.4226 -6.1580 -3.7713
14 7 0.0006 -6.6056 -5.6943
15 6 1.1665 -7.2962 -6.2512
16 6 -1.1311 -6.2643 -6.5598
17 6 3.5675 -0.8479 -1.1701
18 6 3.9570 -1.6657 0.0635
19 6 3.4656 -0.9419 1.3264
20 7 2.0225 -0.6995 1.1945
21 6 1.1537 -1.1126 2.1690
22 1 0.1392 -1.3781 1.9108
23 6 1.5786 -1.1958 3.4878
24 7 2.6870 -0.5921 3.8614
25 14 0.5773 -2.1641 4.7325
26 1 0.4818 -3.5805 4.2965
27 1 1.2399 -2.0980 6.0598
28 1 -0.7858 -1.5834 4.8307
29 1 -0.3633 0.5083 0.8931
30 1 -0.3633 0.5193 -0.8868
31 1 -0.3633 -1.0277 -0.0064
32 1 1.1469 -2.5017 -0.4950
33 1 1.3101 -4.7608 -1.9550
34 1 -0.3012 -4.0364 -2.1717
35 1 0.1031 -3.8650 -4.6118
36 1 1.7145 -4.5895 -4.3958
37 1 1.0201 -8.3737 -6.1772
38 1 1.2884 -7.0170 -7.2977
39 1 2.0583 -7.0114 -5.6930
40 1 -0.9762 -5.2733 -6.9866
41 1 -1.2086 -6.9975 -7.3626
42 1 -2.0504 -6.2681 -5.9742
43 1 3.9379 -1.3448 -2.0668
44 1 4.0061 0.1474 -1.0991
45 1 3.4984 -2.6528 0.0053
46 1 5.0412 -1.7695 0.1037
47 1 3.9877 0.0090 1.4324
48 1 3.6532 -1.5636 2.2019
49 1 2.9837 -0.6499 4.7831
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734455784.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:21
Heat of formation + Delta-G solvation = -108.465539 kcal
Electronic energy + Delta-G solvation = -30077.221577 eV
Core-core repulsion = 25973.282235 eV
Total energy + Delta-G solvation = -4103.939342 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.17270 -39.22440 -38.29399 -37.23921 -36.87999 -35.62257 -34.31605 -33.87495
-33.32329 -31.09452 -28.93020 -27.98824 -26.89195 -26.27021 -25.36984 -23.63977
-22.38661 -21.56503 -20.29834 -19.91073 -18.98098 -18.27642 -18.07105 -17.49444
-17.17767 -17.06680 -16.67181 -16.45491 -15.75694 -15.58062 -15.43474 -15.29148
-15.09421 -14.80220 -14.50419 -14.33820 -14.14330 -14.03567 -13.64640 -13.52699
-13.44961 -13.32494 -13.21031 -12.96068 -12.85778 -12.68830 -12.58457 -12.50459
-12.48783 -12.44103 -12.34705 -12.17280 -11.94478 -11.91187 -11.66827 -11.36361
-11.02616 -10.87312 -10.47792 -9.98248 -9.91013 -8.60400 -7.81172 -5.27439
-0.83934 1.51398 1.53621 1.58380 1.61498 1.65956 2.29349 2.54904
2.80954 3.11800 3.34865 3.35239 3.60417 3.77978 3.80074 3.90714
4.05693 4.08419 4.22392 4.36913 4.41102 4.45475 4.52574 4.58303
4.58552 4.67528 4.77116 4.78854 4.83383 4.95991 4.98391 5.00730
5.01250 5.04842 5.07339 5.14103 5.23769 5.35697 5.47867 5.56271
5.57257 5.65354 5.75715 5.80920 6.45187 6.66924 7.20231 7.28564
7.90747 8.43790 9.25208
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.014584 B = 0.002813 C = 0.002596
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1919.411569 B = 9950.607701 C =10783.250891
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.156 3.844
3 H 0.029 0.971
4 C 0.143 3.857
5 H 0.082 0.918
6 N -0.700 5.700
7 C 0.520 3.480
8 O -0.576 6.576
9 C -0.145 4.145
10 C -0.597 4.597
11 S 2.627 3.373
12 O -0.983 6.983
13 O -0.982 6.982
14 N -1.009 6.009
15 C 0.083 3.917
16 C 0.072 3.928
17 C -0.115 4.115
18 C -0.127 4.127
19 C 0.178 3.822
20 N -0.596 5.596
21 C -0.249 4.249
22 H 0.081 0.919
23 C -0.049 4.049
24 N -0.936 5.936
25 Si 0.957 3.043
26 H -0.276 1.276
27 H -0.304 1.304
28 H -0.278 1.278
29 H 0.045 0.955
30 H 0.064 0.936
31 H 0.059 0.941
32 H 0.410 0.590
33 H 0.121 0.879
34 H 0.125 0.875
35 H 0.149 0.851
36 H 0.146 0.854
37 H 0.058 0.942
38 H 0.098 0.902
39 H 0.074 0.926
40 H 0.073 0.927
41 H 0.094 0.906
42 H 0.074 0.926
43 H 0.057 0.943
44 H 0.065 0.935
45 H 0.055 0.945
46 H 0.060 0.940
47 H -0.006 1.006
48 H 0.054 0.946
49 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.207 -9.940 -21.711 24.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.049 3.951
3 H 0.047 0.953
4 C 0.036 3.964
5 H 0.100 0.900
6 N -0.351 5.351
7 C 0.306 3.694
8 O -0.457 6.457
9 C -0.187 4.187
10 C -0.727 4.727
11 S 2.721 3.279
12 O -0.973 6.973
13 O -0.972 6.972
14 N -0.849 5.849
15 C -0.062 4.062
16 C -0.072 4.072
17 C -0.154 4.154
18 C -0.166 4.166
19 C 0.052 3.948
20 N -0.320 5.320
21 C -0.379 4.379
22 H 0.099 0.901
23 C -0.244 4.244
24 N -0.583 5.583
25 Si 0.787 3.213
26 H -0.202 1.202
27 H -0.231 1.231
28 H -0.204 1.204
29 H 0.064 0.936
30 H 0.083 0.917
31 H 0.078 0.922
32 H 0.247 0.753
33 H 0.139 0.861
34 H 0.143 0.857
35 H 0.167 0.833
36 H 0.164 0.836
37 H 0.077 0.923
38 H 0.116 0.884
39 H 0.093 0.907
40 H 0.092 0.908
41 H 0.113 0.887
42 H 0.092 0.908
43 H 0.076 0.924
44 H 0.083 0.917
45 H 0.074 0.926
46 H 0.079 0.921
47 H 0.012 0.988
48 H 0.073 0.927
49 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -4.237 -10.108 -21.607 24.228
hybrid contribution 0.142 0.297 1.338 1.378
sum -4.094 -9.811 -20.269 22.888
Atomic orbital electron populations
1.21714 0.94181 1.01886 1.00843 1.20854 0.94571 0.93351 0.86300
0.95348 1.21319 0.92812 0.83633 0.98596 0.90002 1.46000 1.61365
1.18277 1.09439 1.20534 0.78244 0.87584 0.83039 1.90640 1.51689
1.68231 1.35145 1.21507 1.05552 0.95673 0.95922 1.30334 1.15990
1.23004 1.03405 1.04428 0.73684 0.76760 0.73002 1.93564 1.69713
1.58602 1.75445 1.93547 1.32816 1.87822 1.83019 1.57172 1.27217
1.72475 1.27994 1.21722 0.85899 0.97146 1.01446 1.21842 0.87384
1.02579 0.95435 1.21720 0.95601 1.00456 0.97594 1.22029 0.99688
0.99116 0.95745 1.20677 0.83335 0.95699 0.95062 1.44357 1.02856
1.65453 1.19326 1.19462 0.95632 1.36312 0.86457 0.90113 1.25762
0.98938 1.00866 0.98835 1.70171 1.26043 1.45471 1.16565 0.85494
0.78274 0.79389 0.78168 1.20198 1.23083 1.20369 0.93565 0.91697
0.92226 0.75338 0.86099 0.85669 0.83289 0.83558 0.92345 0.88369
0.90719 0.90828 0.88704 0.90769 0.92380 0.91669 0.92631 0.92116
0.98814 0.92723 0.94479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.29 7.74 71.98 0.56 -3.73 16
2 C 0.16 5.80 3.20 44.97 0.14 5.94 16
3 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
4 C 0.14 4.63 2.32 45.07 0.10 4.73 16
5 H 0.08 2.61 7.58 -2.39 -0.02 2.60 16
6 N -0.70 -20.62 3.46 -442.18 -1.53 -22.15 16
7 C 0.52 14.25 7.80 87.66 0.68 14.93 16
8 O -0.58 -18.66 15.64 -3.04 -0.05 -18.70 16
9 C -0.15 -2.96 5.71 29.85 0.17 -2.79 16
10 C -0.60 -10.02 5.47 71.98 0.39 -9.63 16
11 S 2.63 49.36 5.38 -56.49 -0.30 49.05 16
12 O -0.98 -24.65 17.08 -127.65 -2.18 -26.83 16
13 O -0.98 -24.06 16.58 -127.65 -2.12 -26.18 16
14 N -1.01 -13.78 3.52 -562.68 -1.98 -15.76 16
15 C 0.08 0.85 10.20 127.77 1.30 2.15 16
16 C 0.07 0.72 10.64 127.77 1.36 2.08 16
17 C -0.12 -3.75 5.58 30.62 0.17 -3.58 16
18 C -0.13 -4.54 5.95 30.82 0.18 -4.36 16
19 C 0.18 8.06 5.32 86.51 0.46 8.52 16
20 N -0.60 -26.64 2.64 -674.38 -1.78 -28.42 16
21 C -0.25 -12.16 8.57 84.03 0.72 -11.44 16
22 H 0.08 3.73 6.24 -2.91 -0.02 3.71 16
23 C -0.05 -2.55 4.93 84.86 0.42 -2.13 16
24 N -0.94 -53.23 11.22 21.65 0.24 -52.99 16
25 Si 0.96 42.78 29.58 68.60 2.03 44.81 16
26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16
28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16
29 H 0.05 1.70 7.62 -2.39 -0.02 1.68 16
30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
31 H 0.06 1.90 6.39 -2.38 -0.02 1.89 16
32 H 0.41 12.34 7.77 -92.70 -0.72 11.62 16
33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16
34 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.15 2.21 8.10 -2.39 -0.02 2.19 16
36 H 0.15 2.24 8.10 -2.39 -0.02 2.22 16
37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
38 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16
39 H 0.07 0.74 7.79 -2.39 -0.02 0.72 16
40 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16
41 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16
42 H 0.07 0.92 6.91 -2.39 -0.02 0.91 16
43 H 0.06 1.83 8.14 -2.38 -0.02 1.82 16
44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
45 H 0.05 1.97 7.53 -2.39 -0.02 1.96 16
46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
47 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16
48 H 0.05 2.83 6.12 -2.39 -0.01 2.82 16
49 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16
Total: -1.00 -71.46 395.85 -0.77 -72.23
By element:
Atomic # 1 Polarization: 24.02 SS G_CDS: 0.22 Total: 24.24 kcal
Atomic # 6 Polarization: -5.97 SS G_CDS: 6.67 Total: 0.70 kcal
Atomic # 7 Polarization: -114.28 SS G_CDS: -5.04 Total: -119.32 kcal
Atomic # 8 Polarization: -67.37 SS G_CDS: -4.34 Total: -71.71 kcal
Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal
Atomic # 16 Polarization: 49.36 SS G_CDS: -0.30 Total: 49.05 kcal
Total: -71.46 -0.77 -72.23 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734455784.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.231 kcal
(2) G-P(sol) polarization free energy of solvation -71.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds