Wall clock time and date at job start Wed Apr 1 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46851 * 2 1 4 4 N 1.46501 * 109.47339 * 119.99503 * 2 1 3 5 5 C 1.34770 * 120.00337 * 275.00483 * 4 2 1 6 6 O 1.21282 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00006 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47446 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47340 * 179.97438 * 8 7 5 10 10 S 1.65602 * 119.99705 * 164.99749 * 9 8 7 11 11 C 1.81400 * 104.44898 * 65.00743 * 10 9 8 12 12 O 1.42102 * 104.27450 * 181.07342 * 10 9 8 13 13 O 1.42092 * 104.27901 * 308.93130 * 10 9 8 14 14 C 1.53001 * 109.47319 * 240.00081 * 2 1 3 15 15 H 1.09001 * 109.51949 * 299.92130 * 14 2 1 16 16 C 1.53041 * 109.49659 * 59.99506 * 14 2 1 17 17 C 1.53040 * 109.53753 * 181.31679 * 16 14 2 18 18 C 1.53195 * 109.31362 * 298.63990 * 17 16 14 19 19 N 1.46923 * 108.89155 * 54.56321 * 18 17 16 20 20 C 1.36934 * 120.62978 * 126.46978 * 19 18 17 21 21 H 1.07997 * 119.99978 * 331.90774 * 20 19 18 22 22 C 1.38810 * 120.00385 * 151.91069 * 20 19 18 23 23 N 1.31626 * 119.99638 * 343.17619 * 22 20 19 24 24 Si 1.86793 * 120.00463 * 163.17439 * 22 20 19 25 25 H 1.48503 * 109.47141 * 90.00030 * 24 22 20 26 26 H 1.48500 * 109.47595 * 209.99829 * 24 22 20 27 27 H 1.48503 * 109.47257 * 330.00288 * 24 22 20 28 28 C 1.46961 * 118.71459 * 306.63745 * 19 18 17 29 29 H 1.08996 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46680 * 300.00252 * 1 2 3 31 31 H 1.08992 * 109.47148 * 59.99588 * 1 2 3 32 32 H 0.97002 * 119.99602 * 94.99855 * 4 2 1 33 33 H 1.08998 * 109.47188 * 300.00127 * 7 5 4 34 34 H 1.09005 * 109.47422 * 59.99770 * 7 5 4 35 35 H 1.08998 * 109.47267 * 300.00368 * 8 7 5 36 36 H 1.08998 * 109.47040 * 59.99953 * 8 7 5 37 37 H 0.97004 * 120.00413 * 345.00574 * 9 8 7 38 38 H 1.08997 * 109.47306 * 59.99204 * 11 10 9 39 39 H 1.09001 * 109.47285 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.46458 * 299.99762 * 11 10 9 41 41 H 1.09002 * 109.45724 * 61.29950 * 16 14 2 42 42 H 1.09002 * 109.46338 * 301.34305 * 16 14 2 43 43 H 1.08998 * 109.49439 * 178.68613 * 17 16 14 44 44 H 1.09003 * 109.51930 * 58.60529 * 17 16 14 45 45 H 1.09000 * 109.58217 * 174.41901 * 18 17 16 46 46 H 1.08998 * 109.58619 * 294.70412 * 18 17 16 47 47 H 0.97000 * 119.99586 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.46939 * 293.57319 * 28 19 18 49 49 H 1.09004 * 109.59279 * 173.22077 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 2.7011 0.2546 4.7588 9 7 3.1884 -0.4363 5.9552 10 16 3.6997 0.4378 7.2655 11 6 2.2083 1.2868 7.8532 12 8 4.1152 -0.5462 8.2026 13 8 4.6246 1.3713 6.7248 14 6 2.0401 -0.7212 -1.2492 15 1 1.6783 -1.7495 -1.2494 16 6 1.5302 -0.0003 -2.4992 17 6 2.0126 -0.7399 -3.7492 18 6 3.5443 -0.7369 -3.7802 19 7 4.0467 -1.2951 -2.5174 20 6 4.9374 -2.3351 -2.5198 21 1 4.9440 -3.0385 -3.3392 22 6 5.8317 -2.4855 -1.4689 23 7 6.0613 -1.4800 -0.6511 24 14 6.7095 -4.1147 -1.2152 25 1 7.9859 -4.1128 -1.9742 26 1 6.9934 -4.3044 0.2300 27 1 5.8471 -5.2224 -1.6998 28 6 3.5719 -0.7180 -1.2519 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2491 -1.6317 1.1527 33 1 1.9761 -1.5505 3.8326 34 1 3.6481 -1.1212 3.3986 35 1 3.3741 1.0762 4.5137 36 1 1.7022 0.6475 4.9481 37 1 3.2116 -1.4057 5.9799 38 1 1.4536 0.5490 8.1255 39 1 2.4548 1.8928 8.7251 40 1 1.8201 1.9286 7.0622 41 1 1.9125 1.0204 -2.5110 42 1 0.4404 0.0204 -2.4874 43 1 1.6297 -0.2393 -4.6385 44 1 1.6512 -1.7680 -3.7263 45 1 3.8940 -1.3460 -4.6137 46 1 3.9054 0.2848 -3.8974 47 1 6.6865 -1.5850 0.0830 48 1 3.9354 0.3055 -1.1604 49 1 3.9401 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752835418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:24 Heat of formation + Delta-G solvation = -101.894002 kcal Electronic energy + Delta-G solvation = -29500.644380 eV Core-core repulsion = 25396.990001 eV Total energy + Delta-G solvation = -4103.654379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.82521 -37.98032 -37.32002 -36.19557 -35.89097 -35.03426 -33.11141 -31.62678 -30.24485 -29.79536 -29.65822 -28.64031 -25.28364 -24.31658 -22.91598 -22.02996 -20.55408 -20.19468 -19.71320 -19.01861 -17.91953 -17.00321 -16.80499 -16.59069 -16.17402 -15.76065 -15.64188 -15.04005 -14.79700 -14.23085 -14.05935 -13.73662 -13.65782 -13.53132 -13.47703 -13.26951 -13.16935 -12.69622 -12.50928 -12.44018 -12.32708 -12.25251 -12.18760 -11.99143 -11.80536 -11.73215 -11.40016 -11.26611 -11.06415 -10.92636 -10.71161 -10.46611 -10.25961 -10.11239 -9.93624 -9.79080 -9.72100 -9.54375 -9.41384 -8.74437 -8.50396 -6.68433 -5.81782 -3.24636 0.01125 2.43097 2.82636 3.33158 3.41495 3.42368 3.42631 3.57794 3.94770 4.39222 4.45489 4.54439 4.66348 4.91411 4.92233 5.06127 5.27582 5.29347 5.30788 5.38365 5.45201 5.49971 5.55479 5.58700 5.73011 5.75289 5.79182 5.87706 6.04340 6.12707 6.15620 6.28898 6.39220 6.42486 6.48113 6.63997 6.70294 6.75085 6.82508 6.86479 7.00053 7.31304 7.61833 7.75675 7.76106 8.41515 8.42931 9.18186 9.81524 10.39254 11.25958 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.002846 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.951987 B = 9836.525670 C =11846.575614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.550 6.550 7 C -0.151 4.151 8 C 0.130 3.870 9 N -1.121 6.121 10 S 2.618 3.382 11 C -0.674 4.674 12 O -0.962 6.962 13 O -0.952 6.952 14 C -0.121 4.121 15 H 0.067 0.933 16 C -0.102 4.102 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.593 5.593 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.900 5.900 24 Si 0.899 3.101 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.181 3.819 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.016 0.984 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 2.289 11.711 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.362 5.362 5 C 0.305 3.695 6 O -0.428 6.428 7 C -0.192 4.192 8 C 0.004 3.996 9 N -0.881 5.881 10 S 2.709 3.291 11 C -0.824 4.824 12 O -0.953 6.953 13 O -0.942 6.942 14 C -0.142 4.142 15 H 0.085 0.915 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.016 3.984 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.206 1.206 28 C 0.055 3.945 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.727 3.382 12.206 17.956 hybrid contribution -0.106 -1.584 0.054 1.589 sum -12.833 1.797 12.261 17.839 Atomic orbital electron populations 1.22203 0.96068 1.01632 1.01941 1.20989 0.92936 0.97625 0.83967 0.89725 1.46024 1.66369 1.14335 1.09494 1.20262 0.77418 0.87198 0.84582 1.90684 1.50925 1.15868 1.85364 1.21797 1.04742 0.99615 0.93068 1.21041 1.00257 0.95115 0.83228 1.55574 1.83949 1.19244 1.29352 1.04613 0.76235 0.74736 0.73475 1.30535 1.23443 1.15244 1.13170 1.93618 1.80487 1.58390 1.62778 1.93644 1.58101 1.65204 1.77267 1.22155 1.01357 0.98614 0.92027 0.91464 1.21443 0.98745 0.99058 0.94765 1.21994 0.99089 0.99815 0.96337 1.20924 0.90995 0.96391 0.90053 1.44036 1.49493 1.38482 0.99478 1.19159 1.10084 1.01796 1.07209 0.91823 1.25036 0.97059 0.97312 1.00141 1.70047 1.36714 1.28759 1.18876 0.86362 0.79742 0.83914 0.77136 1.21397 1.21543 1.20561 1.20768 0.86212 0.97214 0.90321 0.92842 0.92784 0.91532 0.76273 0.88362 0.87436 0.89034 0.91049 0.74785 0.85356 0.85444 0.85190 0.92593 0.93132 0.93141 0.92493 0.93009 0.96578 0.93631 0.96574 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.13 37.16 0.34 -1.68 16 2 C 0.15 2.26 2.16 -67.93 -0.15 2.12 16 3 H 0.08 1.47 7.58 -51.92 -0.39 1.08 16 4 N -0.71 -10.03 4.48 -53.80 -0.24 -10.27 16 5 C 0.52 7.30 7.79 -10.99 -0.09 7.21 16 6 O -0.55 -9.36 15.64 5.56 0.09 -9.27 16 7 C -0.15 -1.53 5.84 -27.88 -0.16 -1.69 16 8 C 0.13 1.26 5.42 -4.04 -0.02 1.23 16 9 N -1.12 -8.90 5.89 -10.62 -0.06 -8.96 16 10 S 2.62 22.84 6.10 -107.50 -0.66 22.19 16 11 C -0.67 -3.40 10.89 101.05 1.10 -2.30 16 12 O -0.96 -11.39 18.08 -57.54 -1.04 -12.43 16 13 O -0.95 -12.68 17.50 -57.54 -1.01 -13.69 16 14 C -0.12 -2.05 1.98 -90.50 -0.18 -2.23 16 15 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.10 -1.60 4.85 -26.69 -0.13 -1.73 16 17 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 18 C 0.14 2.92 6.51 -3.71 -0.02 2.90 16 19 N -0.59 -14.28 3.00 -172.30 -0.52 -14.80 16 20 C -0.25 -6.70 9.58 -15.06 -0.14 -6.84 16 21 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -25.13 11.20 55.49 0.62 -24.51 16 24 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.18 4.01 4.34 -3.69 -0.02 4.00 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 32 H 0.40 5.23 8.43 -40.82 -0.34 4.89 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.42 2.64 8.62 -34.47 -0.30 2.34 16 38 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.13 0.50 8.14 -51.92 -0.42 0.07 16 40 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.13 5.58 -51.93 -0.29 1.84 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -36.21 400.98 -9.78 -45.99 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.26 Total: 5.21 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 0.28 Total: -1.38 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.20 Total: -58.54 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.96 Total: -35.39 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 22.84 SS G_CDS: -0.66 Total: 22.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.21 -9.78 -45.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.901 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds