Wall clock time and date at job start Wed Apr 1 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46851 * 2 1 4 4 N 1.46501 * 109.47339 * 119.99503 * 2 1 3 5 5 C 1.34770 * 120.00337 * 275.00483 * 4 2 1 6 6 O 1.21282 * 120.00336 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00006 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47446 * 179.97438 * 7 5 4 9 9 N 1.46495 * 109.47340 * 179.97438 * 8 7 5 10 10 S 1.65602 * 119.99705 * 164.99749 * 9 8 7 11 11 C 1.81400 * 104.44898 * 65.00743 * 10 9 8 12 12 O 1.42102 * 104.27450 * 181.07342 * 10 9 8 13 13 O 1.42092 * 104.27901 * 308.93130 * 10 9 8 14 14 C 1.53001 * 109.47319 * 240.00081 * 2 1 3 15 15 H 1.09001 * 109.51949 * 299.92130 * 14 2 1 16 16 C 1.53041 * 109.49659 * 59.99506 * 14 2 1 17 17 C 1.53040 * 109.53753 * 181.31679 * 16 14 2 18 18 C 1.53195 * 109.31362 * 298.63990 * 17 16 14 19 19 N 1.46923 * 108.89155 * 54.56321 * 18 17 16 20 20 C 1.36934 * 120.62978 * 126.46978 * 19 18 17 21 21 H 1.07997 * 119.99978 * 331.90774 * 20 19 18 22 22 C 1.38810 * 120.00385 * 151.91069 * 20 19 18 23 23 N 1.31626 * 119.99638 * 343.17619 * 22 20 19 24 24 Si 1.86793 * 120.00463 * 163.17439 * 22 20 19 25 25 H 1.48503 * 109.47141 * 90.00030 * 24 22 20 26 26 H 1.48500 * 109.47595 * 209.99829 * 24 22 20 27 27 H 1.48503 * 109.47257 * 330.00288 * 24 22 20 28 28 C 1.46961 * 118.71459 * 306.63745 * 19 18 17 29 29 H 1.08996 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46680 * 300.00252 * 1 2 3 31 31 H 1.08992 * 109.47148 * 59.99588 * 1 2 3 32 32 H 0.97002 * 119.99602 * 94.99855 * 4 2 1 33 33 H 1.08998 * 109.47188 * 300.00127 * 7 5 4 34 34 H 1.09005 * 109.47422 * 59.99770 * 7 5 4 35 35 H 1.08998 * 109.47267 * 300.00368 * 8 7 5 36 36 H 1.08998 * 109.47040 * 59.99953 * 8 7 5 37 37 H 0.97004 * 120.00413 * 345.00574 * 9 8 7 38 38 H 1.08997 * 109.47306 * 59.99204 * 11 10 9 39 39 H 1.09001 * 109.47285 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.46458 * 299.99762 * 11 10 9 41 41 H 1.09002 * 109.45724 * 61.29950 * 16 14 2 42 42 H 1.09002 * 109.46338 * 301.34305 * 16 14 2 43 43 H 1.08998 * 109.49439 * 178.68613 * 17 16 14 44 44 H 1.09003 * 109.51930 * 58.60529 * 17 16 14 45 45 H 1.09000 * 109.58217 * 174.41901 * 18 17 16 46 46 H 1.08998 * 109.58619 * 294.70412 * 18 17 16 47 47 H 0.97000 * 119.99586 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.46939 * 293.57319 * 28 19 18 49 49 H 1.09004 * 109.59279 * 173.22077 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 2.7011 0.2546 4.7588 9 7 3.1884 -0.4363 5.9552 10 16 3.6997 0.4378 7.2655 11 6 2.2083 1.2868 7.8532 12 8 4.1152 -0.5462 8.2026 13 8 4.6246 1.3713 6.7248 14 6 2.0401 -0.7212 -1.2492 15 1 1.6783 -1.7495 -1.2494 16 6 1.5302 -0.0003 -2.4992 17 6 2.0126 -0.7399 -3.7492 18 6 3.5443 -0.7369 -3.7802 19 7 4.0467 -1.2951 -2.5174 20 6 4.9374 -2.3351 -2.5198 21 1 4.9440 -3.0385 -3.3392 22 6 5.8317 -2.4855 -1.4689 23 7 6.0613 -1.4800 -0.6511 24 14 6.7095 -4.1147 -1.2152 25 1 7.9859 -4.1128 -1.9742 26 1 6.9934 -4.3044 0.2300 27 1 5.8471 -5.2224 -1.6998 28 6 3.5719 -0.7180 -1.2519 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.2491 -1.6317 1.1527 33 1 1.9761 -1.5505 3.8326 34 1 3.6481 -1.1212 3.3986 35 1 3.3741 1.0762 4.5137 36 1 1.7022 0.6475 4.9481 37 1 3.2116 -1.4057 5.9799 38 1 1.4536 0.5490 8.1255 39 1 2.4548 1.8928 8.7251 40 1 1.8201 1.9286 7.0622 41 1 1.9125 1.0204 -2.5110 42 1 0.4404 0.0204 -2.4874 43 1 1.6297 -0.2393 -4.6385 44 1 1.6512 -1.7680 -3.7263 45 1 3.8940 -1.3460 -4.6137 46 1 3.9054 0.2848 -3.8974 47 1 6.6865 -1.5850 0.0830 48 1 3.9354 0.3055 -1.1604 49 1 3.9401 -1.3146 -0.4172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752835418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:23 Heat of formation + Delta-G solvation = -130.785895 kcal Electronic energy + Delta-G solvation = -29501.897226 eV Core-core repulsion = 25396.990001 eV Total energy + Delta-G solvation = -4104.907225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00627 -39.42105 -38.16793 -37.04786 -36.86425 -36.29203 -34.79342 -32.97995 -31.71094 -30.96002 -30.25334 -29.89448 -27.10003 -25.41317 -24.12609 -23.67163 -21.86575 -21.37680 -20.68620 -20.29712 -18.76083 -18.64063 -17.95761 -17.34912 -17.15702 -16.88419 -16.77603 -16.58323 -15.83887 -15.60421 -15.39336 -15.02929 -14.85712 -14.73973 -14.61822 -14.10386 -14.03812 -13.96804 -13.93701 -13.65246 -13.33810 -13.30757 -13.19627 -13.07415 -12.94091 -12.74392 -12.64555 -12.61221 -12.49537 -12.31552 -12.10639 -11.96244 -11.94168 -11.68541 -11.47362 -11.23430 -11.05607 -10.76119 -10.53432 -10.41161 -9.93273 -8.64129 -7.84511 -5.30924 -0.65554 1.46958 1.49584 1.58735 1.69645 1.74327 2.38953 2.52512 2.91720 3.27824 3.30459 3.59468 3.66577 3.96439 4.01495 4.07358 4.10453 4.16156 4.17612 4.22257 4.32225 4.47660 4.53738 4.54620 4.60344 4.70620 4.81177 4.88315 4.90546 4.93977 4.96412 5.06851 5.08144 5.10716 5.18063 5.22788 5.30838 5.42037 5.50735 5.58073 5.63467 5.71804 5.82697 6.12596 6.41032 6.63491 7.17424 7.31756 7.88842 8.41236 9.20339 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.002846 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.951987 B = 9836.525670 C =11846.575614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.055 0.945 4 N -0.713 5.713 5 C 0.514 3.486 6 O -0.583 6.583 7 C -0.145 4.145 8 C 0.131 3.869 9 N -1.115 6.115 10 S 2.623 3.377 11 C -0.649 4.649 12 O -0.998 6.998 13 O -1.009 7.009 14 C -0.105 4.105 15 H 0.073 0.927 16 C -0.101 4.101 17 C -0.121 4.121 18 C 0.134 3.866 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.064 0.936 22 C -0.045 4.045 23 N -0.931 5.931 24 Si 0.963 3.037 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.268 1.268 28 C 0.192 3.808 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.426 0.574 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.004 0.996 47 H 0.248 0.752 48 H -0.026 1.026 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 1.108 11.976 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.048 3.952 3 H 0.074 0.926 4 N -0.363 5.363 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.186 4.186 8 C 0.004 3.996 9 N -0.876 5.876 10 S 2.719 3.281 11 C -0.803 4.803 12 O -0.988 6.988 13 O -0.999 6.999 14 C -0.125 4.125 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.160 4.160 18 C 0.009 3.991 19 N -0.335 5.335 20 C -0.393 4.393 21 H 0.082 0.918 22 C -0.241 4.241 23 N -0.577 5.577 24 Si 0.791 3.209 25 H -0.219 1.219 26 H -0.217 1.217 27 H -0.193 1.193 28 C 0.066 3.934 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.244 0.756 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.262 0.738 38 H 0.173 0.827 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.022 0.978 47 H 0.057 0.943 48 H -0.008 1.008 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.843 2.154 12.433 20.253 hybrid contribution 0.878 -1.142 -0.088 1.443 sum -14.965 1.012 12.345 19.426 Atomic orbital electron populations 1.22092 0.93195 1.02832 1.02479 1.20867 0.94982 0.95777 0.83590 0.92650 1.46068 1.66282 1.14600 1.09389 1.20908 0.76648 0.86924 0.85430 1.90662 1.52445 1.17352 1.85966 1.21815 1.05007 1.00384 0.91347 1.20974 1.00726 0.94354 0.83530 1.55302 1.83877 1.19664 1.28721 1.04178 0.77153 0.73889 0.72844 1.30301 1.20359 1.15619 1.14047 1.93567 1.82144 1.59686 1.63418 1.93577 1.61751 1.66285 1.78255 1.21913 0.97063 0.99522 0.94006 0.90838 1.21473 1.00913 0.98073 0.93403 1.21872 0.95430 1.00611 0.98115 1.21119 0.94130 0.95316 0.88570 1.44357 1.49629 1.38370 1.01169 1.19472 1.10323 1.02388 1.07118 0.91833 1.25731 0.98070 1.00139 1.00123 1.70217 1.37546 1.30559 1.19360 0.85361 0.78355 0.80548 0.76638 1.21898 1.21662 1.19261 1.20544 0.89817 0.93935 0.89085 0.91195 0.93045 0.90214 0.75612 0.84455 0.88147 0.91964 0.88775 0.73787 0.82682 0.83643 0.83935 0.93503 0.89376 0.90020 0.92145 0.93153 0.97808 0.94262 1.00839 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.13 71.98 0.66 -2.68 16 2 C 0.15 4.55 2.16 44.99 0.10 4.65 16 3 H 0.06 1.98 7.58 -2.38 -0.02 1.97 16 4 N -0.71 -19.95 4.48 -442.52 -1.98 -21.93 16 5 C 0.51 14.40 7.79 87.66 0.68 15.09 16 6 O -0.58 -20.14 15.64 -3.04 -0.05 -20.18 16 7 C -0.14 -2.82 5.84 29.85 0.17 -2.64 16 8 C 0.13 2.46 5.42 86.38 0.47 2.92 16 9 N -1.11 -16.89 5.89 -187.50 -1.10 -17.99 16 10 S 2.62 45.19 6.10 -56.49 -0.34 44.84 16 11 C -0.65 -4.69 10.89 113.37 1.23 -3.45 16 12 O -1.00 -23.63 18.08 -127.65 -2.31 -25.94 16 13 O -1.01 -28.21 17.50 -127.65 -2.23 -30.44 16 14 C -0.10 -3.47 1.98 -10.72 -0.02 -3.50 16 15 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.10 -2.94 4.85 30.62 0.15 -2.79 16 17 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 18 C 0.13 5.48 6.51 86.36 0.56 6.04 16 19 N -0.61 -30.04 3.00 -699.03 -2.10 -32.13 16 20 C -0.26 -14.11 9.58 84.03 0.81 -13.31 16 21 H 0.06 3.35 7.88 -2.91 -0.02 3.32 16 22 C -0.04 -2.44 4.92 84.86 0.42 -2.02 16 23 N -0.93 -53.88 11.20 21.65 0.24 -53.63 16 24 Si 0.96 43.53 29.59 68.60 2.03 45.56 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 C 0.19 8.80 4.34 86.35 0.37 9.18 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.59 6.40 -2.39 -0.02 1.57 16 32 H 0.41 10.43 8.43 -92.71 -0.78 9.65 16 33 H 0.14 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.06 1.54 7.65 -2.39 -0.02 1.53 16 36 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.43 4.93 8.62 -96.74 -0.83 4.10 16 38 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.98 6.36 -2.39 -0.02 1.97 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 48 H -0.03 -1.41 8.14 -2.39 -0.02 -1.43 16 49 H 0.07 3.28 5.58 -2.38 -0.01 3.26 16 Total: -1.00 -82.51 400.98 -2.71 -85.22 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.66 Total: 22.70 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.79 Total: 3.94 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -4.94 Total: -125.69 kcal Atomic # 8 Polarization: -71.97 SS G_CDS: -4.59 Total: -76.56 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 45.19 SS G_CDS: -0.34 Total: 44.84 kcal Total: -82.51 -2.71 -85.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.567 kcal (2) G-P(sol) polarization free energy of solvation -82.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds