Wall clock time and date at job start Wed Apr 1 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47035 * 2 1 4 4 N 1.46491 * 109.47412 * 239.99467 * 2 1 3 5 5 C 1.34779 * 120.00053 * 84.99771 * 4 2 1 6 6 O 1.21281 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00140 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47240 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47202 * 180.02562 * 8 7 5 10 10 S 1.65602 * 119.99970 * 164.99549 * 9 8 7 11 11 C 1.81401 * 104.44695 * 65.00332 * 10 9 8 12 12 O 1.42098 * 104.27589 * 181.07177 * 10 9 8 13 13 O 1.42103 * 104.27798 * 308.93296 * 10 9 8 14 14 C 1.53004 * 109.47156 * 119.99157 * 2 1 3 15 15 H 1.09008 * 109.49561 * 59.93919 * 14 2 1 16 16 C 1.53037 * 109.49728 * 299.84407 * 14 2 1 17 17 C 1.53047 * 109.53795 * 178.68240 * 16 14 2 18 18 C 1.52754 * 109.38378 * 61.23712 * 17 16 14 19 19 N 1.46932 * 109.01099 * 305.59147 * 18 17 16 20 20 C 1.36931 * 120.62964 * 233.58902 * 19 18 17 21 21 H 1.08002 * 120.00075 * 152.35895 * 20 19 18 22 22 C 1.38813 * 120.00120 * 332.34384 * 20 19 18 23 23 N 1.31621 * 120.00027 * 342.76454 * 22 20 19 24 24 Si 1.86800 * 120.00058 * 162.47463 * 22 20 19 25 25 H 1.48507 * 109.46810 * 84.99183 * 24 22 20 26 26 H 1.48499 * 109.47476 * 204.98927 * 24 22 20 27 27 H 1.48496 * 109.47213 * 324.99479 * 24 22 20 28 28 C 1.46924 * 118.73758 * 53.30692 * 19 18 17 29 29 H 1.09001 * 109.47376 * 300.00092 * 1 2 3 30 30 H 1.09003 * 109.47349 * 60.01057 * 1 2 3 31 31 H 1.09006 * 109.46644 * 180.02562 * 1 2 3 32 32 H 0.97008 * 120.00434 * 264.99882 * 4 2 1 33 33 H 1.08997 * 109.47427 * 300.00403 * 7 5 4 34 34 H 1.08997 * 109.46770 * 60.00086 * 7 5 4 35 35 H 1.09001 * 109.46672 * 299.99941 * 8 7 5 36 36 H 1.08998 * 109.47164 * 59.99693 * 8 7 5 37 37 H 0.96994 * 119.99987 * 345.00396 * 9 8 7 38 38 H 1.09002 * 109.46937 * 59.99581 * 11 10 9 39 39 H 1.09001 * 109.47267 * 180.02562 * 11 10 9 40 40 H 1.09004 * 109.47048 * 299.99715 * 11 10 9 41 41 H 1.09002 * 109.46301 * 298.69621 * 16 14 2 42 42 H 1.09001 * 109.46592 * 58.66377 * 16 14 2 43 43 H 1.08995 * 109.49608 * 181.31623 * 17 16 14 44 44 H 1.09006 * 109.49576 * 301.37707 * 17 16 14 45 45 H 1.08997 * 109.51067 * 185.71031 * 18 17 16 46 46 H 1.08997 * 109.43181 * 65.42668 * 18 17 16 47 47 H 0.96998 * 119.99813 * 179.72089 * 23 22 20 48 48 H 1.09004 * 109.58803 * 66.43223 * 28 19 18 49 49 H 1.08993 * 109.58971 * 186.86030 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1584 -2.4116 7 6 2.6500 -0.7288 -3.5873 8 6 2.7020 0.2543 -4.7585 9 7 3.1903 -0.4364 -5.9546 10 16 3.0042 0.2587 -7.4461 11 6 4.0301 1.7533 -7.3801 12 8 3.5613 -0.6891 -8.3464 13 8 1.6264 0.6017 -7.5034 14 6 2.0400 -0.7211 1.2494 15 1 1.6760 -1.7486 1.2505 16 6 1.5334 0.0023 2.4992 17 6 2.0158 -0.7371 3.7494 18 6 3.5430 -0.7412 3.7783 19 7 4.0442 -1.3001 2.5152 20 6 4.9299 -2.3444 2.5172 21 1 4.9595 -3.0290 1.6824 22 6 5.7902 -2.5228 3.5919 23 7 6.0045 -1.5346 4.4344 24 14 6.6373 -4.1680 3.8470 25 1 7.8763 -4.2188 3.0298 26 1 6.9839 -4.3292 5.2820 27 1 5.7254 -5.2640 3.4319 28 6 3.5719 -0.7214 1.2500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6319 -1.1524 33 1 3.6493 -1.1206 -3.3977 34 1 1.9779 -1.5511 -3.8323 35 1 1.7027 0.6464 -4.9483 36 1 3.3743 1.0764 -4.5132 37 1 3.6225 -1.3009 -5.8729 38 1 5.0661 1.4746 -7.1874 39 1 3.9662 2.2802 -8.3322 40 1 3.6740 2.4034 -6.5809 41 1 1.9181 1.0222 2.5096 42 1 0.4437 0.0255 2.4889 43 1 1.6352 -0.2347 4.6387 44 1 1.6515 -1.7642 3.7278 45 1 3.8897 -1.3527 4.6114 46 1 3.9063 0.2797 3.8957 47 1 6.6025 -1.6606 5.1877 48 1 3.9375 0.3013 1.1570 49 1 3.9375 -1.3197 0.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752835422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:27 Heat of formation + Delta-G solvation = -102.050225 kcal Electronic energy + Delta-G solvation = -28993.316761 eV Core-core repulsion = 24889.655608 eV Total energy + Delta-G solvation = -4103.661153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.03683 -38.09063 -37.45569 -36.33864 -36.03983 -35.20487 -33.09947 -31.51289 -30.56949 -30.04015 -29.84035 -28.48146 -25.31632 -24.46360 -23.03386 -21.98395 -20.70221 -20.39568 -19.85628 -19.08643 -18.06132 -17.18385 -16.87018 -16.67501 -16.30790 -16.01288 -15.70337 -15.03985 -14.87324 -14.40418 -14.28896 -13.91357 -13.65427 -13.59988 -13.54170 -13.41104 -13.21574 -12.75431 -12.59336 -12.50590 -12.46182 -12.34815 -12.32528 -12.06627 -11.92159 -11.78978 -11.53606 -11.39554 -11.15277 -11.00512 -10.68699 -10.47627 -10.26635 -10.18421 -9.99024 -9.91630 -9.85402 -9.57449 -9.46299 -8.95770 -8.50151 -6.71551 -5.83160 -3.25596 -0.10901 2.28893 2.60550 3.20882 3.32929 3.40415 3.41734 3.43453 3.83116 4.26846 4.40760 4.43435 4.56035 4.72709 4.74718 4.95224 5.10479 5.19515 5.22483 5.27422 5.33489 5.37972 5.49935 5.51907 5.56463 5.69408 5.73375 5.77338 5.99220 6.03853 6.09276 6.25973 6.31530 6.39899 6.51565 6.56092 6.57644 6.67685 6.76326 6.84209 6.93729 7.36886 7.52542 7.63765 7.73823 8.20829 8.40052 9.16524 9.80510 10.37137 11.25072 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.002214 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.644917 B =12641.475549 C =14183.441708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.086 0.914 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.546 6.546 7 C -0.150 4.150 8 C 0.129 3.871 9 N -1.122 6.122 10 S 2.618 3.382 11 C -0.674 4.674 12 O -0.962 6.962 13 O -0.956 6.956 14 C -0.111 4.111 15 H 0.071 0.929 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.168 3.832 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.157 3.843 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.402 0.598 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 3.971 -17.550 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 N -0.368 5.368 5 C 0.302 3.698 6 O -0.423 6.423 7 C -0.192 4.192 8 C 0.002 3.998 9 N -0.882 5.882 10 S 2.710 3.290 11 C -0.824 4.824 12 O -0.952 6.952 13 O -0.946 6.946 14 C -0.132 4.132 15 H 0.089 0.911 16 C -0.139 4.139 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.030 3.970 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.253 0.747 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.227 4.682 -18.144 20.465 hybrid contribution 1.332 -1.209 0.721 1.938 sum -6.895 3.474 -17.423 19.057 Atomic orbital electron populations 1.22200 0.95688 1.01872 1.02202 1.21063 0.93485 0.97543 0.83686 0.89580 1.46108 1.66694 1.14291 1.09670 1.20327 0.77666 0.87278 0.84499 1.90708 1.50540 1.15939 1.85159 1.21804 1.04437 0.99967 0.92989 1.21051 1.01118 0.94289 0.83324 1.55587 1.76286 1.32707 1.23614 1.04592 0.75497 0.76278 0.72660 1.30524 1.17185 1.22922 1.11729 1.93624 1.80725 1.58655 1.62178 1.93628 1.30359 1.85155 1.85469 1.21977 0.99536 0.99190 0.92497 0.91054 1.21446 0.98776 0.99024 0.94692 1.22103 1.00855 0.99352 0.95789 1.20708 0.87517 0.97261 0.90252 1.44025 1.49815 1.38032 0.99500 1.19115 1.11527 1.02219 1.05467 0.91836 1.25031 0.97305 0.97483 0.99818 1.70040 1.38181 1.29536 1.16780 0.86346 0.79429 0.84003 0.77136 1.21342 1.21556 1.20597 1.20846 0.89870 0.96292 0.90005 0.91315 0.92621 0.92703 0.76346 0.87818 0.87944 0.89205 0.90749 0.74716 0.85149 0.85353 0.85135 0.92600 0.93111 0.93206 0.92811 0.89562 0.96561 0.93602 0.96621 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.14 37.16 0.34 -1.55 16 2 C 0.15 1.93 2.16 -67.93 -0.15 1.79 16 3 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.72 -8.11 4.47 -53.81 -0.24 -8.35 16 5 C 0.52 5.91 7.79 -10.98 -0.09 5.82 16 6 O -0.55 -8.11 15.64 5.56 0.09 -8.02 16 7 C -0.15 -1.12 5.84 -27.88 -0.16 -1.28 16 8 C 0.13 0.98 5.42 -4.04 -0.02 0.95 16 9 N -1.12 -6.84 5.89 -10.61 -0.06 -6.91 16 10 S 2.62 18.71 6.10 -107.50 -0.66 18.05 16 11 C -0.67 -2.84 10.89 101.05 1.10 -1.74 16 12 O -0.96 -10.00 18.08 -57.54 -1.04 -11.04 16 13 O -0.96 -10.67 17.50 -57.54 -1.01 -11.68 16 14 C -0.11 -1.71 1.97 -90.50 -0.18 -1.88 16 15 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 16 C -0.10 -1.58 4.86 -26.69 -0.13 -1.71 16 17 C -0.14 -2.57 6.06 -26.83 -0.16 -2.74 16 18 C 0.17 3.89 5.28 -3.93 -0.02 3.86 16 19 N -0.59 -14.11 3.00 -172.59 -0.52 -14.63 16 20 C -0.25 -6.66 9.59 -15.06 -0.14 -6.81 16 21 H 0.06 1.62 7.89 -52.49 -0.41 1.20 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -25.61 11.18 55.49 0.62 -24.99 16 24 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.16 3.03 5.56 -3.71 -0.02 3.01 16 29 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 3.86 8.42 -40.82 -0.34 3.52 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.80 7.65 -51.93 -0.40 0.40 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.42 1.90 8.62 -34.47 -0.30 1.60 16 38 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 2.25 6.03 -51.93 -0.31 1.93 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.93 7.44 -51.93 -0.39 0.54 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -36.30 400.88 -9.78 -46.08 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.26 Total: 1.75 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 0.28 Total: -2.30 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.20 Total: -54.87 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.96 Total: -30.73 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 18.71 SS G_CDS: -0.66 Total: 18.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.30 -9.78 -46.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.970 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds