Wall clock time and date at job start Wed Apr 1 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47035 * 2 1 4 4 N 1.46491 * 109.47412 * 239.99467 * 2 1 3 5 5 C 1.34779 * 120.00053 * 84.99771 * 4 2 1 6 6 O 1.21281 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00140 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47240 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47202 * 180.02562 * 8 7 5 10 10 S 1.65602 * 119.99970 * 164.99549 * 9 8 7 11 11 C 1.81401 * 104.44695 * 65.00332 * 10 9 8 12 12 O 1.42098 * 104.27589 * 181.07177 * 10 9 8 13 13 O 1.42103 * 104.27798 * 308.93296 * 10 9 8 14 14 C 1.53004 * 109.47156 * 119.99157 * 2 1 3 15 15 H 1.09008 * 109.49561 * 59.93919 * 14 2 1 16 16 C 1.53037 * 109.49728 * 299.84407 * 14 2 1 17 17 C 1.53047 * 109.53795 * 178.68240 * 16 14 2 18 18 C 1.52754 * 109.38378 * 61.23712 * 17 16 14 19 19 N 1.46932 * 109.01099 * 305.59147 * 18 17 16 20 20 C 1.36931 * 120.62964 * 233.58902 * 19 18 17 21 21 H 1.08002 * 120.00075 * 152.35895 * 20 19 18 22 22 C 1.38813 * 120.00120 * 332.34384 * 20 19 18 23 23 N 1.31621 * 120.00027 * 342.76454 * 22 20 19 24 24 Si 1.86800 * 120.00058 * 162.47463 * 22 20 19 25 25 H 1.48507 * 109.46810 * 84.99183 * 24 22 20 26 26 H 1.48499 * 109.47476 * 204.98927 * 24 22 20 27 27 H 1.48496 * 109.47213 * 324.99479 * 24 22 20 28 28 C 1.46924 * 118.73758 * 53.30692 * 19 18 17 29 29 H 1.09001 * 109.47376 * 300.00092 * 1 2 3 30 30 H 1.09003 * 109.47349 * 60.01057 * 1 2 3 31 31 H 1.09006 * 109.46644 * 180.02562 * 1 2 3 32 32 H 0.97008 * 120.00434 * 264.99882 * 4 2 1 33 33 H 1.08997 * 109.47427 * 300.00403 * 7 5 4 34 34 H 1.08997 * 109.46770 * 60.00086 * 7 5 4 35 35 H 1.09001 * 109.46672 * 299.99941 * 8 7 5 36 36 H 1.08998 * 109.47164 * 59.99693 * 8 7 5 37 37 H 0.96994 * 119.99987 * 345.00396 * 9 8 7 38 38 H 1.09002 * 109.46937 * 59.99581 * 11 10 9 39 39 H 1.09001 * 109.47267 * 180.02562 * 11 10 9 40 40 H 1.09004 * 109.47048 * 299.99715 * 11 10 9 41 41 H 1.09002 * 109.46301 * 298.69621 * 16 14 2 42 42 H 1.09001 * 109.46592 * 58.66377 * 16 14 2 43 43 H 1.08995 * 109.49608 * 181.31623 * 17 16 14 44 44 H 1.09006 * 109.49576 * 301.37707 * 17 16 14 45 45 H 1.08997 * 109.51067 * 185.71031 * 18 17 16 46 46 H 1.08997 * 109.43181 * 65.42668 * 18 17 16 47 47 H 0.96998 * 119.99813 * 179.72089 * 23 22 20 48 48 H 1.09004 * 109.58803 * 66.43223 * 28 19 18 49 49 H 1.08993 * 109.58971 * 186.86030 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1584 -2.4116 7 6 2.6500 -0.7288 -3.5873 8 6 2.7020 0.2543 -4.7585 9 7 3.1903 -0.4364 -5.9546 10 16 3.0042 0.2587 -7.4461 11 6 4.0301 1.7533 -7.3801 12 8 3.5613 -0.6891 -8.3464 13 8 1.6264 0.6017 -7.5034 14 6 2.0400 -0.7211 1.2494 15 1 1.6760 -1.7486 1.2505 16 6 1.5334 0.0023 2.4992 17 6 2.0158 -0.7371 3.7494 18 6 3.5430 -0.7412 3.7783 19 7 4.0442 -1.3001 2.5152 20 6 4.9299 -2.3444 2.5172 21 1 4.9595 -3.0290 1.6824 22 6 5.7902 -2.5228 3.5919 23 7 6.0045 -1.5346 4.4344 24 14 6.6373 -4.1680 3.8470 25 1 7.8763 -4.2188 3.0298 26 1 6.9839 -4.3292 5.2820 27 1 5.7254 -5.2640 3.4319 28 6 3.5719 -0.7214 1.2500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.2491 -1.6319 -1.1524 33 1 3.6493 -1.1206 -3.3977 34 1 1.9779 -1.5511 -3.8323 35 1 1.7027 0.6464 -4.9483 36 1 3.3743 1.0764 -4.5132 37 1 3.6225 -1.3009 -5.8729 38 1 5.0661 1.4746 -7.1874 39 1 3.9662 2.2802 -8.3322 40 1 3.6740 2.4034 -6.5809 41 1 1.9181 1.0222 2.5096 42 1 0.4437 0.0255 2.4889 43 1 1.6352 -0.2347 4.6387 44 1 1.6515 -1.7642 3.7278 45 1 3.8897 -1.3527 4.6114 46 1 3.9063 0.2797 3.8957 47 1 6.6025 -1.6606 5.1877 48 1 3.9375 0.3013 1.1570 49 1 3.9375 -1.3197 0.4155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752835422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:26 Heat of formation + Delta-G solvation = -130.752132 kcal Electronic energy + Delta-G solvation = -28994.561369 eV Core-core repulsion = 24889.655608 eV Total energy + Delta-G solvation = -4104.905761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02551 -39.44917 -38.16488 -37.05557 -36.89907 -36.33147 -34.65330 -32.74751 -32.22931 -30.92866 -30.24754 -29.74162 -27.11764 -25.43347 -24.15793 -23.58464 -21.94670 -21.39145 -20.69732 -20.29693 -18.77736 -18.59925 -17.92805 -17.35909 -17.07403 -16.99767 -16.72617 -16.50746 -15.90000 -15.57814 -15.52382 -15.01231 -14.93147 -14.71835 -14.63468 -14.11156 -14.01780 -13.97124 -13.91980 -13.65846 -13.30894 -13.25203 -13.19092 -13.07074 -12.98467 -12.76788 -12.70979 -12.51963 -12.49897 -12.25402 -12.18677 -11.95926 -11.94766 -11.73541 -11.48355 -11.23810 -11.07377 -10.75207 -10.50743 -10.40944 -9.96846 -8.66052 -7.84994 -5.30246 -0.65218 1.47907 1.50200 1.58706 1.71619 1.73549 2.36282 2.52597 2.89963 3.29809 3.30049 3.58160 3.67898 3.94187 4.00197 4.05949 4.06631 4.11854 4.17833 4.22240 4.37526 4.49264 4.53885 4.55494 4.64472 4.68237 4.81950 4.89344 4.91820 4.92533 4.97794 4.98726 5.08408 5.12698 5.14226 5.28232 5.29834 5.37605 5.50130 5.57643 5.64461 5.70223 5.80295 6.14065 6.40443 6.64829 7.16650 7.33457 7.88778 8.40732 9.21242 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.002214 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.644917 B =12641.475549 C =14183.441708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.065 0.935 4 N -0.715 5.715 5 C 0.513 3.487 6 O -0.583 6.583 7 C -0.144 4.144 8 C 0.127 3.873 9 N -1.114 6.114 10 S 2.629 3.371 11 C -0.657 4.657 12 O -0.997 6.997 13 O -1.003 7.003 14 C -0.094 4.094 15 H 0.078 0.922 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.072 0.928 22 C -0.054 4.054 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.156 3.844 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.412 0.588 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.427 0.573 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.051 0.949 46 H -0.012 1.012 47 H 0.248 0.752 48 H -0.003 1.003 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 3.132 -18.722 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.050 3.950 3 H 0.083 0.917 4 N -0.366 5.366 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.185 4.185 8 C 0.000 4.000 9 N -0.875 5.875 10 S 2.724 3.276 11 C -0.811 4.811 12 O -0.988 6.988 13 O -0.993 6.993 14 C -0.115 4.115 15 H 0.096 0.904 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.794 3.206 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.194 1.194 28 C 0.031 3.969 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.006 0.994 47 H 0.057 0.943 48 H 0.015 0.985 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.947 3.782 -19.350 21.652 hybrid contribution 1.600 -0.853 1.068 2.105 sum -7.347 2.929 -18.283 19.920 Atomic orbital electron populations 1.22125 0.93990 1.02752 1.02300 1.20820 0.94628 0.96169 0.83405 0.91711 1.46071 1.66542 1.14759 1.09209 1.20973 0.76765 0.86914 0.85299 1.90694 1.52163 1.17742 1.85775 1.21824 1.05936 0.99928 0.90778 1.21011 1.00570 0.94736 0.83673 1.55305 1.76294 1.33296 1.22618 1.04021 0.74709 0.76682 0.72158 1.30365 1.17075 1.20421 1.13215 1.93574 1.81002 1.60729 1.63456 1.93570 1.33748 1.85874 1.86073 1.21743 0.96147 0.99890 0.93678 0.90367 1.21447 1.00799 0.98129 0.93289 1.21933 0.96725 1.00155 0.98127 1.20540 0.90939 0.94705 0.89186 1.44308 1.49848 1.37989 1.01080 1.19526 1.11173 1.02781 1.05383 0.91018 1.25806 0.98622 1.00488 1.00025 1.70208 1.39373 1.31449 1.17382 0.85320 0.78496 0.80416 0.76355 1.21033 1.22378 1.19355 1.20967 0.92698 0.94897 0.88368 0.90542 0.93242 0.91355 0.75115 0.85578 0.85920 0.90869 0.90068 0.73696 0.83197 0.83722 0.84092 0.93260 0.89655 0.91442 0.92688 0.93055 0.99371 0.94283 0.98548 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.14 71.98 0.66 -2.52 16 2 C 0.16 3.80 2.16 44.99 0.10 3.90 16 3 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 4 N -0.71 -14.71 4.47 -442.54 -1.98 -16.69 16 5 C 0.51 10.90 7.79 87.66 0.68 11.59 16 6 O -0.58 -16.92 15.64 -3.03 -0.05 -16.97 16 7 C -0.14 -1.80 5.84 29.85 0.17 -1.63 16 8 C 0.13 1.73 5.42 86.38 0.47 2.20 16 9 N -1.11 -11.92 5.89 -187.49 -1.10 -13.02 16 10 S 2.63 35.51 6.10 -56.49 -0.34 35.17 16 11 C -0.66 -3.94 10.89 113.37 1.23 -2.71 16 12 O -1.00 -20.28 18.08 -127.65 -2.31 -22.59 16 13 O -1.00 -22.50 17.50 -127.65 -2.23 -24.74 16 14 C -0.09 -2.71 1.97 -10.72 -0.02 -2.73 16 15 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 16 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 17 C -0.13 -4.58 6.06 30.53 0.19 -4.40 16 18 C 0.17 8.13 5.28 86.22 0.46 8.58 16 19 N -0.61 -29.22 3.00 -699.94 -2.10 -31.33 16 20 C -0.26 -13.57 9.59 84.03 0.81 -12.76 16 21 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 22 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 23 N -0.94 -54.95 11.18 21.65 0.24 -54.71 16 24 Si 0.97 43.47 29.59 68.60 2.03 45.50 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.16 5.95 5.56 86.36 0.48 6.43 16 29 H 0.08 1.46 6.40 -2.39 -0.02 1.45 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.41 6.80 8.42 -92.70 -0.78 6.02 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 36 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.43 3.08 8.62 -96.75 -0.83 2.24 16 38 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.97 6.37 -2.39 -0.02 1.95 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.05 2.77 6.03 -2.39 -0.01 2.75 16 46 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 49 H 0.06 2.09 7.44 -2.39 -0.02 2.08 16 Total: -1.00 -81.06 400.88 -2.72 -83.78 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.66 Total: 14.91 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.79 Total: 0.68 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.94 Total: -115.74 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -4.59 Total: -64.30 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 35.51 SS G_CDS: -0.34 Total: 35.17 kcal Total: -81.06 -2.72 -83.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.973 kcal (2) G-P(sol) polarization free energy of solvation -81.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds