Wall clock time and date at job start Wed Apr 1 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47283 * 239.99652 * 2 1 3 5 5 C 1.34774 * 119.99911 * 84.99954 * 4 2 1 6 6 O 1.21278 * 119.99813 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99845 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47066 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47712 * 180.02562 * 8 7 5 10 10 S 1.65596 * 120.00727 * 164.99836 * 9 8 7 11 11 C 1.81404 * 104.44637 * 65.00004 * 10 9 8 12 12 O 1.42095 * 104.27954 * 181.06918 * 10 9 8 13 13 O 1.42101 * 104.27583 * 308.92845 * 10 9 8 14 14 C 1.53001 * 109.46957 * 120.00062 * 2 1 3 15 15 H 1.09000 * 109.49910 * 180.02562 * 14 2 1 16 16 C 1.53038 * 109.49692 * 300.06326 * 14 2 1 17 17 C 1.53040 * 109.54113 * 181.32122 * 16 14 2 18 18 C 1.53200 * 109.30731 * 298.63324 * 17 16 14 19 19 N 1.46921 * 108.77531 * 54.63716 * 18 17 16 20 20 C 1.36931 * 120.63267 * 126.38793 * 19 18 17 21 21 H 1.08001 * 119.99987 * 332.53502 * 20 19 18 22 22 C 1.38819 * 120.00418 * 152.53129 * 20 19 18 23 23 N 1.31615 * 120.00168 * 159.35386 * 22 20 19 24 24 Si 1.86805 * 119.99569 * 339.35407 * 22 20 19 25 25 H 1.48496 * 109.46892 * 92.97349 * 24 22 20 26 26 H 1.48497 * 109.46964 * 212.97337 * 24 22 20 27 27 H 1.48505 * 109.47034 * 332.97255 * 24 22 20 28 28 C 1.46934 * 118.76420 * 306.40834 * 19 18 17 29 29 H 1.09003 * 109.46986 * 60.00526 * 1 2 3 30 30 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47156 * 299.99997 * 1 2 3 32 32 H 0.97008 * 120.00169 * 265.00345 * 4 2 1 33 33 H 1.08994 * 109.47367 * 300.00290 * 7 5 4 34 34 H 1.08997 * 109.46929 * 60.00554 * 7 5 4 35 35 H 1.09003 * 109.46900 * 300.00172 * 8 7 5 36 36 H 1.08998 * 109.47108 * 59.99605 * 8 7 5 37 37 H 0.97006 * 119.99315 * 345.00033 * 9 8 7 38 38 H 1.08997 * 109.47386 * 60.00341 * 11 10 9 39 39 H 1.08999 * 109.46948 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.46980 * 299.99915 * 11 10 9 41 41 H 1.09007 * 109.46193 * 301.34147 * 16 14 2 42 42 H 1.08999 * 109.46057 * 61.30853 * 16 14 2 43 43 H 1.08997 * 109.50010 * 58.57994 * 17 16 14 44 44 H 1.09000 * 109.50329 * 178.65575 * 17 16 14 45 45 H 1.09004 * 109.58131 * 174.42409 * 18 17 16 46 46 H 1.08997 * 109.58863 * 294.70063 * 18 17 16 47 47 H 0.97004 * 119.99887 * 180.02562 * 23 22 20 48 48 H 1.08995 * 109.56302 * 293.78841 * 28 19 18 49 49 H 1.08995 * 109.61477 * 173.35806 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1584 -2.4115 7 6 2.6500 -0.7287 -3.5874 8 6 2.7019 0.2544 -4.7585 9 7 3.1902 -0.4361 -5.9547 10 16 3.0043 0.2590 -7.4461 11 6 4.0302 1.7536 -7.3800 12 8 3.5614 -0.6887 -8.3464 13 8 1.6265 0.6020 -7.5035 14 6 2.0399 -0.7213 1.2493 15 1 3.1299 -0.7212 1.2500 16 6 1.5288 -0.0012 2.4992 17 6 2.0653 -0.7024 3.7493 18 6 1.5532 -2.1460 3.7794 19 7 1.9161 -2.8030 2.5164 20 6 2.6033 -3.9874 2.5183 21 1 3.2558 -4.2318 3.3435 22 6 2.4612 -4.8740 1.4597 23 7 3.3816 -5.7888 1.2394 24 14 0.9638 -4.7688 0.3478 25 1 1.2753 -3.9083 -0.8217 26 1 0.5995 -6.1296 -0.1219 27 1 -0.1736 -4.1849 1.1032 28 6 1.5283 -2.1652 1.2508 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6319 -1.1525 33 1 3.6492 -1.1205 -3.3977 34 1 1.9778 -1.5510 -3.8324 35 1 1.7028 0.6466 -4.9483 36 1 3.3743 1.0765 -4.5132 37 1 3.6225 -1.3007 -5.8730 38 1 5.0662 1.4749 -7.1873 39 1 3.9664 2.2805 -8.3320 40 1 3.6741 2.4036 -6.5808 41 1 1.8715 1.0335 2.4880 42 1 0.4391 -0.0226 2.5105 43 1 3.1550 -0.7034 3.7264 44 1 1.7204 -0.1750 4.6386 45 1 2.0109 -2.6786 4.6131 46 1 0.4695 -2.1469 3.8961 47 1 3.2825 -6.4081 0.4994 48 1 0.4423 -2.1681 1.1584 49 1 1.9695 -2.7100 0.4162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752835432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:30 Heat of formation + Delta-G solvation = -94.236211 kcal Electronic energy + Delta-G solvation = -29553.741704 eV Core-core repulsion = 25450.419392 eV Total energy + Delta-G solvation = -4103.322312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09708 -38.42598 -37.42495 -36.30538 -36.02798 -35.21129 -33.21017 -31.83271 -30.77614 -30.18565 -29.84474 -28.43970 -25.39289 -24.75281 -23.55685 -22.45910 -20.66288 -20.25335 -19.75872 -19.04072 -18.05544 -17.25064 -16.83505 -16.69593 -16.31174 -16.12491 -15.73576 -15.33226 -14.97801 -14.54033 -14.23169 -14.13403 -13.88511 -13.68198 -13.60413 -13.53083 -13.32609 -13.03910 -12.69514 -12.56179 -12.42695 -12.30726 -12.22862 -12.20496 -11.99152 -11.83860 -11.83149 -11.47472 -11.36942 -11.07602 -10.80526 -10.61681 -10.53499 -10.17848 -9.95144 -9.86595 -9.77708 -9.74176 -9.53853 -8.98422 -8.70492 -7.04214 -6.04042 -3.39411 -0.08186 2.32290 2.60972 3.12035 3.24533 3.39725 3.41422 3.47141 3.85442 4.29244 4.41112 4.42871 4.57239 4.70174 4.77536 4.82688 5.05484 5.15074 5.16207 5.19580 5.22585 5.28728 5.35892 5.47298 5.51910 5.55634 5.63841 5.73298 5.78591 5.92847 5.99761 6.01698 6.11939 6.23072 6.29099 6.36452 6.47252 6.52310 6.57859 6.60025 6.64985 6.68873 6.92161 7.54369 7.87700 8.20820 8.24579 8.85750 9.62749 10.01522 11.11957 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002624 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.031482 B =10670.063634 C =11929.842164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 H 0.086 0.914 4 N -0.721 5.721 5 C 0.518 3.482 6 O -0.548 6.548 7 C -0.154 4.154 8 C 0.131 3.869 9 N -1.122 6.122 10 S 2.619 3.381 11 C -0.674 4.674 12 O -0.961 6.961 13 O -0.956 6.956 14 C -0.114 4.114 15 H 0.078 0.922 16 C -0.102 4.102 17 C -0.135 4.135 18 C 0.147 3.853 19 N -0.605 5.605 20 C -0.258 4.258 21 H 0.086 0.914 22 C 0.022 3.978 23 N -0.907 5.907 24 Si 0.882 3.118 25 H -0.292 1.292 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.132 3.868 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.405 0.595 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.419 0.581 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.031 0.969 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 15.152 -10.752 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.104 0.896 4 N -0.373 5.373 5 C 0.304 3.696 6 O -0.426 6.426 7 C -0.195 4.195 8 C 0.004 3.996 9 N -0.882 5.882 10 S 2.710 3.290 11 C -0.823 4.823 12 O -0.951 6.951 13 O -0.945 6.945 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.141 4.141 17 C -0.174 4.174 18 C 0.021 3.979 19 N -0.329 5.329 20 C -0.386 4.386 21 H 0.103 0.897 22 C -0.177 4.177 23 N -0.550 5.550 24 Si 0.713 3.287 25 H -0.220 1.220 26 H -0.231 1.231 27 H -0.196 1.196 28 C 0.006 3.994 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.254 0.746 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.049 0.951 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.384 15.677 -11.565 19.485 hybrid contribution 0.032 -0.527 -0.245 0.582 sum -0.352 15.150 -11.811 19.213 Atomic orbital electron populations 1.22285 0.95551 1.02522 1.02182 1.21034 0.94110 0.96866 0.83711 0.89619 1.46297 1.66536 1.14718 1.09748 1.20340 0.77576 0.87206 0.84506 1.90686 1.50829 1.15919 1.85208 1.21832 1.04596 1.00110 0.92968 1.21030 1.01082 0.94146 0.83328 1.55594 1.76280 1.32753 1.23592 1.04588 0.75496 0.76249 0.72653 1.30525 1.17166 1.22998 1.11659 1.93626 1.80721 1.58606 1.62150 1.93630 1.30312 1.85148 1.85459 1.21976 1.01348 0.97458 0.92719 0.90313 1.21443 1.00388 0.97915 0.94308 1.21999 1.01116 0.97886 0.96438 1.20951 0.96596 0.91173 0.89195 1.44328 1.66086 1.23055 0.99385 1.18954 1.18712 0.92848 1.08094 0.89660 1.25298 0.97796 0.96291 0.98329 1.69835 1.32787 1.21428 1.30949 0.86997 0.85892 0.75706 0.80104 1.21979 1.23084 1.19606 1.21438 0.97070 0.90769 0.90137 0.92503 0.92038 0.91252 0.75847 0.87778 0.87771 0.89187 0.90828 0.74629 0.85209 0.85388 0.85205 0.92832 0.92019 0.92001 0.92595 0.91962 0.95994 0.92734 0.95097 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.79 37.16 0.33 -1.96 16 2 C 0.15 2.10 2.41 -67.93 -0.16 1.94 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 4 N -0.72 -10.03 5.00 -53.81 -0.27 -10.30 16 5 C 0.52 6.75 7.79 -10.99 -0.09 6.67 16 6 O -0.55 -8.46 15.64 5.56 0.09 -8.37 16 7 C -0.15 -1.45 5.84 -27.88 -0.16 -1.61 16 8 C 0.13 1.12 5.42 -4.04 -0.02 1.10 16 9 N -1.12 -8.00 5.88 -10.61 -0.06 -8.06 16 10 S 2.62 20.43 6.10 -107.50 -0.66 19.78 16 11 C -0.67 -2.99 10.89 101.05 1.10 -1.89 16 12 O -0.96 -10.69 18.08 -57.54 -1.04 -11.73 16 13 O -0.96 -11.37 17.50 -57.54 -1.01 -12.37 16 14 C -0.11 -1.81 2.33 -90.50 -0.21 -2.02 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 16 C -0.10 -1.45 4.77 -26.69 -0.13 -1.57 16 17 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 18 C 0.15 2.71 6.52 -3.71 -0.02 2.69 16 19 N -0.61 -13.43 2.77 -172.32 -0.48 -13.91 16 20 C -0.26 -6.83 10.03 -15.06 -0.15 -6.98 16 21 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 22 C 0.02 0.59 5.23 -17.43 -0.09 0.50 16 23 N -0.91 -26.49 13.97 55.49 0.78 -25.71 16 24 Si 0.88 20.98 24.35 -169.99 -4.14 16.84 16 25 H -0.29 -6.27 6.62 56.52 0.37 -5.90 16 26 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.27 -6.45 6.64 56.52 0.38 -6.08 16 28 C 0.13 2.57 2.98 -3.71 -0.01 2.56 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.91 6.32 -51.93 -0.33 0.58 16 31 H 0.07 0.85 6.46 -51.93 -0.34 0.52 16 32 H 0.41 5.80 6.97 -40.82 -0.28 5.52 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.89 7.65 -51.93 -0.40 0.50 16 36 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 37 H 0.42 2.43 8.62 -34.47 -0.30 2.14 16 38 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.84 6.50 -51.93 -0.34 0.50 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.03 0.62 5.11 -51.93 -0.27 0.35 16 49 H 0.07 1.39 3.10 -51.93 -0.16 1.23 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -35.97 389.00 -8.60 -44.57 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.89 Total: 6.19 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.22 Total: -2.79 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.03 Total: -57.98 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.96 Total: -32.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 16 Polarization: 20.43 SS G_CDS: -0.66 Total: 19.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.97 -8.60 -44.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.663 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds