Wall clock time and date at job start Wed Apr 1 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47148 * 2 1 4 4 N 1.46501 * 109.47283 * 239.99652 * 2 1 3 5 5 C 1.34774 * 119.99911 * 84.99954 * 4 2 1 6 6 O 1.21278 * 119.99813 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99845 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47066 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47712 * 180.02562 * 8 7 5 10 10 S 1.65596 * 120.00727 * 164.99836 * 9 8 7 11 11 C 1.81404 * 104.44637 * 65.00004 * 10 9 8 12 12 O 1.42095 * 104.27954 * 181.06918 * 10 9 8 13 13 O 1.42101 * 104.27583 * 308.92845 * 10 9 8 14 14 C 1.53001 * 109.46957 * 120.00062 * 2 1 3 15 15 H 1.09000 * 109.49910 * 180.02562 * 14 2 1 16 16 C 1.53038 * 109.49692 * 300.06326 * 14 2 1 17 17 C 1.53040 * 109.54113 * 181.32122 * 16 14 2 18 18 C 1.53200 * 109.30731 * 298.63324 * 17 16 14 19 19 N 1.46921 * 108.77531 * 54.63716 * 18 17 16 20 20 C 1.36931 * 120.63267 * 126.38793 * 19 18 17 21 21 H 1.08001 * 119.99987 * 332.53502 * 20 19 18 22 22 C 1.38819 * 120.00418 * 152.53129 * 20 19 18 23 23 N 1.31615 * 120.00168 * 159.35386 * 22 20 19 24 24 Si 1.86805 * 119.99569 * 339.35407 * 22 20 19 25 25 H 1.48496 * 109.46892 * 92.97349 * 24 22 20 26 26 H 1.48497 * 109.46964 * 212.97337 * 24 22 20 27 27 H 1.48505 * 109.47034 * 332.97255 * 24 22 20 28 28 C 1.46934 * 118.76420 * 306.40834 * 19 18 17 29 29 H 1.09003 * 109.46986 * 60.00526 * 1 2 3 30 30 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47156 * 299.99997 * 1 2 3 32 32 H 0.97008 * 120.00169 * 265.00345 * 4 2 1 33 33 H 1.08994 * 109.47367 * 300.00290 * 7 5 4 34 34 H 1.08997 * 109.46929 * 60.00554 * 7 5 4 35 35 H 1.09003 * 109.46900 * 300.00172 * 8 7 5 36 36 H 1.08998 * 109.47108 * 59.99605 * 8 7 5 37 37 H 0.97006 * 119.99315 * 345.00033 * 9 8 7 38 38 H 1.08997 * 109.47386 * 60.00341 * 11 10 9 39 39 H 1.08999 * 109.46948 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.46980 * 299.99915 * 11 10 9 41 41 H 1.09007 * 109.46193 * 301.34147 * 16 14 2 42 42 H 1.08999 * 109.46057 * 61.30853 * 16 14 2 43 43 H 1.08997 * 109.50010 * 58.57994 * 17 16 14 44 44 H 1.09000 * 109.50329 * 178.65575 * 17 16 14 45 45 H 1.09004 * 109.58131 * 174.42409 * 18 17 16 46 46 H 1.08997 * 109.58863 * 294.70063 * 18 17 16 47 47 H 0.97004 * 119.99887 * 180.02562 * 23 22 20 48 48 H 1.08995 * 109.56302 * 293.78841 * 28 19 18 49 49 H 1.08995 * 109.61477 * 173.35806 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1584 -2.4115 7 6 2.6500 -0.7287 -3.5874 8 6 2.7019 0.2544 -4.7585 9 7 3.1902 -0.4361 -5.9547 10 16 3.0043 0.2590 -7.4461 11 6 4.0302 1.7536 -7.3800 12 8 3.5614 -0.6887 -8.3464 13 8 1.6265 0.6020 -7.5035 14 6 2.0399 -0.7213 1.2493 15 1 3.1299 -0.7212 1.2500 16 6 1.5288 -0.0012 2.4992 17 6 2.0653 -0.7024 3.7493 18 6 1.5532 -2.1460 3.7794 19 7 1.9161 -2.8030 2.5164 20 6 2.6033 -3.9874 2.5183 21 1 3.2558 -4.2318 3.3435 22 6 2.4612 -4.8740 1.4597 23 7 3.3816 -5.7888 1.2394 24 14 0.9638 -4.7688 0.3478 25 1 1.2753 -3.9083 -0.8217 26 1 0.5995 -6.1296 -0.1219 27 1 -0.1736 -4.1849 1.1032 28 6 1.5283 -2.1652 1.2508 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2490 -1.6319 -1.1525 33 1 3.6492 -1.1205 -3.3977 34 1 1.9778 -1.5510 -3.8324 35 1 1.7028 0.6466 -4.9483 36 1 3.3743 1.0765 -4.5132 37 1 3.6225 -1.3007 -5.8730 38 1 5.0662 1.4749 -7.1873 39 1 3.9664 2.2805 -8.3320 40 1 3.6741 2.4036 -6.5808 41 1 1.8715 1.0335 2.4880 42 1 0.4391 -0.0226 2.5105 43 1 3.1550 -0.7034 3.7264 44 1 1.7204 -0.1750 4.6386 45 1 2.0109 -2.6786 4.6131 46 1 0.4695 -2.1469 3.8961 47 1 3.2825 -6.4081 0.4994 48 1 0.4423 -2.1681 1.1584 49 1 1.9695 -2.7100 0.4162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752835432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:29 Heat of formation + Delta-G solvation = -124.154360 kcal Electronic energy + Delta-G solvation = -29555.039052 eV Core-core repulsion = 25450.419392 eV Total energy + Delta-G solvation = -4104.619660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.19139 -39.72100 -38.17735 -37.06872 -36.91420 -36.34659 -34.82979 -33.17702 -32.36505 -31.09122 -30.25642 -29.62977 -27.15111 -25.80977 -24.67001 -23.87169 -21.93564 -21.28967 -20.55049 -20.33568 -18.85666 -18.67032 -17.97315 -17.57020 -17.28138 -17.06588 -16.78115 -16.57558 -16.07001 -15.66676 -15.58580 -15.20020 -15.10782 -15.01550 -14.72138 -14.48091 -13.99581 -13.96750 -13.95966 -13.72199 -13.60576 -13.32744 -13.26921 -13.20691 -13.08418 -12.85318 -12.71604 -12.61879 -12.52154 -12.47572 -12.06029 -11.96232 -11.94327 -11.59487 -11.51457 -11.26986 -11.21213 -10.86941 -10.61879 -10.43990 -10.08057 -8.87711 -8.14345 -5.45725 -0.66346 1.24022 1.44223 1.51249 1.61353 1.70206 2.27767 2.41168 2.90013 3.06734 3.28902 3.34505 3.60051 3.80460 3.89348 3.93699 4.00919 4.05924 4.10634 4.20989 4.28111 4.36205 4.39534 4.51701 4.53734 4.56338 4.59090 4.71258 4.80380 4.85480 4.90528 4.95892 4.99588 5.03024 5.07764 5.12126 5.17653 5.25568 5.29317 5.40148 5.53311 5.62544 5.89405 6.08738 6.15182 6.48363 6.94827 7.17847 7.65184 8.05865 9.05642 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002624 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.031482 B =10670.063634 C =11929.842164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.090 0.910 4 N -0.727 5.727 5 C 0.517 3.483 6 O -0.573 6.573 7 C -0.152 4.152 8 C 0.131 3.869 9 N -1.117 6.117 10 S 2.627 3.373 11 C -0.653 4.653 12 O -0.999 6.999 13 O -1.004 7.004 14 C -0.102 4.102 15 H 0.064 0.936 16 C -0.101 4.101 17 C -0.126 4.126 18 C 0.138 3.862 19 N -0.621 5.621 20 C -0.248 4.248 21 H 0.048 0.952 22 C -0.033 4.033 23 N -0.956 5.956 24 Si 0.941 3.059 25 H -0.257 1.257 26 H -0.317 1.317 27 H -0.269 1.269 28 C 0.130 3.870 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.403 0.597 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.425 0.575 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.034 0.966 47 H 0.261 0.739 48 H 0.036 0.964 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 17.948 -11.270 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.108 0.892 4 N -0.378 5.378 5 C 0.304 3.696 6 O -0.453 6.453 7 C -0.193 4.193 8 C 0.004 3.996 9 N -0.878 5.878 10 S 2.723 3.277 11 C -0.806 4.806 12 O -0.989 6.989 13 O -0.994 6.994 14 C -0.123 4.123 15 H 0.083 0.917 16 C -0.138 4.138 17 C -0.165 4.165 18 C 0.013 3.987 19 N -0.345 5.345 20 C -0.378 4.378 21 H 0.066 0.934 22 C -0.227 4.227 23 N -0.602 5.602 24 Si 0.770 3.230 25 H -0.183 1.183 26 H -0.247 1.247 27 H -0.194 1.194 28 C 0.005 3.995 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.239 0.761 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.261 0.739 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.846 18.486 -12.081 22.100 hybrid contribution 0.242 -1.338 0.038 1.360 sum -0.604 17.148 -12.043 20.963 Atomic orbital electron populations 1.22250 0.94883 1.01964 1.02959 1.20968 0.94516 0.96722 0.83103 0.89153 1.46387 1.66727 1.14621 1.10109 1.20861 0.76773 0.86957 0.84980 1.90671 1.51898 1.17076 1.85611 1.21882 1.05761 1.00105 0.91528 1.20996 1.00817 0.94476 0.83265 1.55356 1.76311 1.33355 1.22761 1.04085 0.74767 0.76825 0.72033 1.30327 1.16958 1.20029 1.13329 1.93573 1.81015 1.60913 1.63417 1.93569 1.33875 1.85905 1.86023 1.21797 1.00397 0.95307 0.94769 0.91712 1.21478 1.01061 0.98870 0.92441 1.21899 1.00304 0.95671 0.98601 1.21159 0.97244 0.93016 0.87252 1.44474 1.66047 1.22221 1.01739 1.18865 1.17768 0.94593 1.06594 0.93406 1.25873 1.00128 0.96315 1.00427 1.69969 1.34769 1.23075 1.32387 0.86015 0.82010 0.75346 0.79608 1.18294 1.24660 1.19361 1.21465 0.97075 0.92680 0.88270 0.92750 0.93139 0.89519 0.76117 0.85612 0.87134 0.90826 0.89187 0.73855 0.83068 0.83660 0.83837 0.90110 0.90839 0.93240 0.89394 0.93200 0.94839 0.92949 0.94672 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 8.79 71.98 0.63 -3.35 16 2 C 0.15 3.93 2.41 44.99 0.11 4.04 16 3 H 0.09 2.32 7.58 -2.39 -0.02 2.30 16 4 N -0.73 -18.77 5.00 -442.55 -2.21 -20.98 16 5 C 0.52 12.46 7.79 87.66 0.68 13.15 16 6 O -0.57 -16.60 15.64 -3.02 -0.05 -16.65 16 7 C -0.15 -2.54 5.84 29.85 0.17 -2.37 16 8 C 0.13 2.01 5.42 86.38 0.47 2.48 16 9 N -1.12 -14.27 5.88 -187.49 -1.10 -15.37 16 10 S 2.63 38.51 6.10 -56.49 -0.34 38.16 16 11 C -0.65 -3.77 10.89 113.37 1.23 -2.53 16 12 O -1.00 -21.85 18.08 -127.65 -2.31 -24.16 16 13 O -1.00 -23.87 17.50 -127.65 -2.23 -26.10 16 14 C -0.10 -3.00 2.33 -10.72 -0.02 -3.02 16 15 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.10 -2.48 4.77 30.62 0.15 -2.33 16 17 C -0.13 -3.46 6.08 30.67 0.19 -3.28 16 18 C 0.14 4.94 6.52 86.37 0.56 5.51 16 19 N -0.62 -27.29 2.77 -699.08 -1.93 -29.23 16 20 C -0.25 -13.51 10.03 84.04 0.84 -12.67 16 21 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 22 C -0.03 -1.82 5.23 84.86 0.44 -1.37 16 23 N -0.96 -57.63 13.97 21.65 0.30 -57.33 16 24 Si 0.94 43.49 24.35 68.60 1.67 45.16 16 25 H -0.26 -10.29 6.62 99.48 0.66 -9.63 16 26 H -0.32 -15.35 7.11 99.48 0.71 -14.65 16 27 H -0.27 -12.18 6.64 99.48 0.66 -11.52 16 28 C 0.13 4.87 2.98 86.36 0.26 5.13 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.35 6.32 -2.38 -0.02 1.33 16 31 H 0.09 1.80 6.46 -2.39 -0.02 1.78 16 32 H 0.40 10.81 6.97 -92.70 -0.65 10.16 16 33 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.39 7.65 -2.39 -0.02 1.37 16 36 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.43 4.32 8.62 -96.74 -0.83 3.48 16 38 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.07 1.68 6.50 -2.39 -0.02 1.67 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 48 H 0.04 1.31 5.11 -2.39 -0.01 1.30 16 49 H 0.05 2.03 3.10 -2.39 -0.01 2.02 16 Total: -1.00 -80.32 389.00 -3.10 -83.42 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.60 Total: 23.69 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.72 Total: -0.62 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.95 Total: -122.91 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -4.59 Total: -66.90 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.16 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.34 Total: 38.16 kcal Total: -80.32 -3.10 -83.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752835432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.734 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds