Wall clock time and date at job start Wed Apr 1 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65602 * 120.00285 * 2 1 4 4 O 1.42103 * 104.27299 * 308.92786 * 3 2 1 5 5 O 1.42100 * 104.27821 * 181.07143 * 3 2 1 6 6 C 1.81398 * 104.44695 * 65.00074 * 3 2 1 7 7 C 1.53003 * 109.46823 * 180.02562 * 6 3 2 8 8 C 1.50701 * 109.47204 * 180.02562 * 7 6 3 9 9 O 1.21287 * 119.99949 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00597 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63524 * 180.02562 * 10 8 7 12 12 C 1.53189 * 108.77251 * 233.62630 * 11 10 8 13 13 C 1.53049 * 109.31630 * 305.36250 * 12 11 10 14 14 C 1.52992 * 109.46109 * 181.38860 * 13 12 11 15 15 H 1.09002 * 109.47103 * 299.97040 * 14 13 12 16 16 C 1.52997 * 109.47482 * 59.97287 * 14 13 12 17 17 N 1.46497 * 109.47081 * 179.97438 * 14 13 12 18 18 C 1.36940 * 120.00565 * 154.99853 * 17 14 13 19 19 H 1.08004 * 119.99402 * 359.97438 * 18 17 14 20 20 C 1.38815 * 120.00150 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47120 * 59.99555 * 22 20 18 24 24 H 1.48500 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46925 * 300.00019 * 22 20 18 26 26 C 1.53042 * 109.52476 * 61.37087 * 13 12 11 27 27 C 1.46935 * 120.62425 * 0.02562 * 10 8 7 28 28 H 1.09001 * 109.47206 * 59.99714 * 1 2 3 29 29 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47083 * 299.99963 * 1 2 3 31 31 H 0.97009 * 120.00085 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47678 * 60.00363 * 6 3 2 33 33 H 1.09006 * 109.47252 * 299.99714 * 6 3 2 34 34 H 1.09000 * 109.47463 * 59.99910 * 7 6 3 35 35 H 1.09002 * 109.46962 * 299.99416 * 7 6 3 36 36 H 1.08995 * 109.58787 * 113.83767 * 11 10 8 37 37 H 1.08998 * 109.58311 * 353.41428 * 11 10 8 38 38 H 1.08997 * 109.49975 * 185.41372 * 12 11 10 39 39 H 1.09004 * 109.49800 * 65.31486 * 12 11 10 40 40 H 1.09002 * 109.45741 * 301.36490 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 14 13 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 14 13 43 43 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 44 44 H 0.97006 * 119.99921 * 334.99446 * 17 14 13 45 45 H 0.96997 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.49617 * 58.58251 * 26 13 12 47 47 H 1.08997 * 109.50004 * 178.67694 * 26 13 12 48 48 H 1.08993 * 109.58567 * 246.15873 * 27 10 8 49 49 H 1.08991 * 109.58764 * 6.44919 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0258 6 6 1.8764 2.1972 1.5920 7 6 2.5891 3.5458 1.7131 8 6 2.2435 4.1795 3.0360 9 8 1.5000 3.6090 3.8060 10 7 2.7597 5.3807 3.3632 11 6 2.4326 6.0110 4.6494 12 6 1.9015 7.4234 4.3854 13 6 2.9203 8.1987 3.5466 14 6 2.4088 9.6211 3.3101 15 1 1.4571 9.5816 2.7801 16 6 2.2146 10.3236 4.6553 17 7 3.3840 10.3636 2.5077 18 6 2.9769 11.4258 1.7455 19 1 1.9366 11.7160 1.7355 20 6 3.9011 12.1297 0.9857 21 7 5.1689 11.7764 0.9982 22 14 3.3457 13.5792 -0.0536 23 1 2.7398 14.6134 0.8231 24 1 4.5152 14.1554 -0.7646 25 1 2.3404 13.1205 -1.0457 26 6 3.1151 7.4965 2.2008 27 6 3.6605 6.0848 2.4402 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 2.1958 1.5431 2.4033 33 1 0.7987 2.3497 1.6510 34 1 2.2693 4.1999 0.9020 35 1 3.6668 3.3937 1.6541 36 1 3.3288 6.0671 5.2672 37 1 1.6701 5.4235 5.1607 38 1 1.7456 7.9368 5.3341 39 1 0.9569 7.3618 3.8449 40 1 3.8719 8.2384 4.0766 41 1 3.1663 10.3631 5.1853 42 1 1.4889 9.7711 5.2522 43 1 1.8506 11.3371 4.4867 44 1 4.3183 10.1028 2.5165 45 1 5.8147 12.2680 0.4670 46 1 2.1589 7.4342 1.6812 47 1 3.8229 8.0617 1.5946 48 1 4.6566 6.1470 2.8781 49 1 3.7099 5.5447 1.4948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753276079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:24 Heat of formation + Delta-G solvation = -104.289152 kcal Electronic energy + Delta-G solvation = -29177.344020 eV Core-core repulsion = 25073.585780 eV Total energy + Delta-G solvation = -4103.758240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38128 -38.07830 -37.46517 -36.32287 -35.48659 -35.42094 -33.74436 -32.85274 -31.05315 -30.77318 -28.36156 -26.43710 -26.12554 -24.97951 -23.57012 -22.73580 -21.15327 -19.85183 -19.63472 -19.12129 -18.26738 -17.67016 -17.07596 -16.85056 -16.26526 -16.05288 -15.91672 -15.15129 -14.94864 -14.44234 -14.27114 -14.01011 -13.95443 -13.91016 -13.55535 -13.42040 -13.28120 -12.95705 -12.61020 -12.57744 -12.45136 -12.34909 -12.29739 -12.08863 -12.05460 -11.89623 -11.63601 -11.27857 -11.18426 -11.00692 -10.85908 -10.73866 -10.33378 -10.30176 -10.20667 -10.07212 -9.91625 -9.77730 -9.59071 -8.91429 -8.67641 -6.95961 -5.77535 -3.05488 -0.15810 2.29729 2.42461 2.84559 3.38555 3.43289 3.48353 3.48719 3.82953 3.98329 4.30164 4.39654 4.52888 4.57651 4.78561 4.93191 4.96050 4.99878 5.04735 5.08510 5.17904 5.24099 5.28532 5.34003 5.39183 5.48893 5.53163 5.63789 5.73241 5.88992 5.90659 5.97892 6.08458 6.17392 6.29302 6.37545 6.45237 6.45382 6.51417 6.63590 6.75798 6.92293 7.11052 7.27382 7.69466 7.98083 8.41559 9.52745 10.10505 10.45310 11.45068 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.002328 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.589863 B =12025.351654 C =13339.963184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.614 3.386 4 O -0.950 6.950 5 O -0.956 6.956 6 C -0.611 4.611 7 C -0.137 4.137 8 C 0.524 3.476 9 O -0.547 6.547 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.128 4.128 13 C -0.090 4.090 14 C 0.178 3.822 15 H 0.045 0.955 16 C -0.166 4.166 17 N -0.723 5.723 18 C -0.236 4.236 19 H 0.068 0.932 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.124 4.124 27 C 0.099 3.901 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.418 0.582 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 -24.324 3.516 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.705 3.295 4 O -0.940 6.940 5 O -0.946 6.946 6 C -0.740 4.740 7 C -0.178 4.178 8 C 0.311 3.689 9 O -0.425 6.425 10 N -0.338 5.338 11 C -0.010 4.010 12 C -0.167 4.167 13 C -0.109 4.109 14 C 0.068 3.932 15 H 0.063 0.937 16 C -0.226 4.226 17 N -0.364 5.364 18 C -0.367 4.367 19 H 0.086 0.914 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.163 4.163 27 C -0.023 4.023 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.252 0.748 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.398 -24.004 3.113 25.310 hybrid contribution -0.084 0.541 0.105 0.558 sum -7.481 -23.462 3.218 24.835 Atomic orbital electron populations 1.21538 0.78620 1.04362 1.02158 1.55379 1.16069 1.24596 1.92220 1.04978 0.73765 0.73973 0.76823 1.93629 1.78738 1.72189 1.49432 1.93622 1.32571 1.81194 1.87193 1.30404 1.11861 1.07633 1.24128 1.21410 1.02708 0.94765 0.98922 1.20115 0.80069 0.80939 0.87787 1.90669 1.36900 1.62684 1.52233 1.48179 1.47497 1.18622 1.19497 1.21666 1.00976 0.94022 0.84329 1.22024 0.99325 0.94160 1.01173 1.21384 0.98613 0.95734 0.95208 1.20209 0.93474 0.88459 0.91055 0.93731 1.22498 1.00046 1.00992 0.99106 1.42404 1.06675 1.34981 1.52342 1.19170 0.93445 1.05497 1.18582 0.91419 1.24705 0.95480 0.99830 1.00916 1.69636 1.00927 1.42734 1.44950 0.86307 0.77151 0.82707 0.80251 1.21397 1.21748 1.21325 1.21917 1.02669 0.93318 0.98352 1.22012 0.93132 0.94246 0.92911 0.91176 0.89918 0.92063 0.74822 0.84141 0.84290 0.86980 0.87188 0.91462 0.89313 0.90307 0.91657 0.91319 0.93601 0.94328 0.93015 0.78339 0.93514 0.91782 0.88671 0.90753 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.03 59.84 0.66 0.99 16 2 N -1.12 -6.12 6.07 -16.63 -0.10 -6.22 16 3 S 2.61 21.30 5.46 -107.50 -0.59 20.71 16 4 O -0.95 -11.10 17.73 -57.54 -1.02 -12.12 16 5 O -0.96 -10.69 18.08 -57.54 -1.04 -11.73 16 6 C -0.61 -4.50 5.31 37.16 0.20 -4.30 16 7 C -0.14 -1.23 4.05 -27.88 -0.11 -1.34 16 8 C 0.52 6.32 7.70 -10.99 -0.08 6.24 16 9 O -0.55 -8.02 15.39 5.55 0.09 -7.93 16 10 N -0.61 -7.13 2.97 -172.76 -0.51 -7.65 16 11 C 0.11 1.31 6.43 -3.71 -0.02 1.28 16 12 C -0.13 -1.59 5.04 -26.61 -0.13 -1.72 16 13 C -0.09 -1.32 1.79 -90.58 -0.16 -1.48 16 14 C 0.18 3.28 2.47 -67.94 -0.17 3.12 16 15 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 16 C -0.17 -2.86 9.14 37.16 0.34 -2.52 16 17 N -0.72 -16.96 4.41 -53.43 -0.24 -17.19 16 18 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 22 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 C -0.12 -1.77 5.22 -26.60 -0.14 -1.91 16 27 C 0.10 1.11 6.34 -3.69 -0.02 1.09 16 28 H 0.07 0.34 8.04 -51.93 -0.42 -0.08 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.18 7.73 -51.93 -0.40 -0.22 16 31 H 0.42 1.61 8.92 -34.47 -0.31 1.30 16 32 H 0.14 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.14 0.92 7.73 -51.92 -0.40 0.51 16 34 H 0.11 0.89 7.69 -51.93 -0.40 0.49 16 35 H 0.11 0.79 7.94 -51.93 -0.41 0.38 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 38 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.38 9.52 7.58 -40.82 -0.31 9.21 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -36.36 400.21 -9.71 -46.07 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.14 Total: 7.10 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 0.10 Total: -7.49 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.13 Total: -57.70 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.97 Total: -31.78 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 21.30 SS G_CDS: -0.59 Total: 20.71 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.36 -9.71 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753276079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.221 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds