Wall clock time and date at job start Wed Apr 1 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65602 * 120.00285 * 2 1 4 4 O 1.42103 * 104.27299 * 308.92786 * 3 2 1 5 5 O 1.42100 * 104.27821 * 181.07143 * 3 2 1 6 6 C 1.81398 * 104.44695 * 65.00074 * 3 2 1 7 7 C 1.53003 * 109.46823 * 180.02562 * 6 3 2 8 8 C 1.50701 * 109.47204 * 180.02562 * 7 6 3 9 9 O 1.21287 * 119.99949 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00597 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63524 * 180.02562 * 10 8 7 12 12 C 1.53189 * 108.77251 * 233.62630 * 11 10 8 13 13 C 1.53049 * 109.31630 * 305.36250 * 12 11 10 14 14 C 1.52992 * 109.46109 * 181.38860 * 13 12 11 15 15 H 1.09002 * 109.47103 * 299.97040 * 14 13 12 16 16 C 1.52997 * 109.47482 * 59.97287 * 14 13 12 17 17 N 1.46497 * 109.47081 * 179.97438 * 14 13 12 18 18 C 1.36940 * 120.00565 * 154.99853 * 17 14 13 19 19 H 1.08004 * 119.99402 * 359.97438 * 18 17 14 20 20 C 1.38815 * 120.00150 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99847 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47120 * 59.99555 * 22 20 18 24 24 H 1.48500 * 109.47078 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46925 * 300.00019 * 22 20 18 26 26 C 1.53042 * 109.52476 * 61.37087 * 13 12 11 27 27 C 1.46935 * 120.62425 * 0.02562 * 10 8 7 28 28 H 1.09001 * 109.47206 * 59.99714 * 1 2 3 29 29 H 1.09005 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47083 * 299.99963 * 1 2 3 31 31 H 0.97009 * 120.00085 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47678 * 60.00363 * 6 3 2 33 33 H 1.09006 * 109.47252 * 299.99714 * 6 3 2 34 34 H 1.09000 * 109.47463 * 59.99910 * 7 6 3 35 35 H 1.09002 * 109.46962 * 299.99416 * 7 6 3 36 36 H 1.08995 * 109.58787 * 113.83767 * 11 10 8 37 37 H 1.08998 * 109.58311 * 353.41428 * 11 10 8 38 38 H 1.08997 * 109.49975 * 185.41372 * 12 11 10 39 39 H 1.09004 * 109.49800 * 65.31486 * 12 11 10 40 40 H 1.09002 * 109.45741 * 301.36490 * 13 12 11 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 14 13 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 14 13 43 43 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 44 44 H 0.97006 * 119.99921 * 334.99446 * 17 14 13 45 45 H 0.96997 * 119.99796 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.49617 * 58.58251 * 26 13 12 47 47 H 1.08997 * 109.50004 * 178.67694 * 26 13 12 48 48 H 1.08993 * 109.58567 * 246.15873 * 27 10 8 49 49 H 1.08991 * 109.58764 * 6.44919 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0258 6 6 1.8764 2.1972 1.5920 7 6 2.5891 3.5458 1.7131 8 6 2.2435 4.1795 3.0360 9 8 1.5000 3.6090 3.8060 10 7 2.7597 5.3807 3.3632 11 6 2.4326 6.0110 4.6494 12 6 1.9015 7.4234 4.3854 13 6 2.9203 8.1987 3.5466 14 6 2.4088 9.6211 3.3101 15 1 1.4571 9.5816 2.7801 16 6 2.2146 10.3236 4.6553 17 7 3.3840 10.3636 2.5077 18 6 2.9769 11.4258 1.7455 19 1 1.9366 11.7160 1.7355 20 6 3.9011 12.1297 0.9857 21 7 5.1689 11.7764 0.9982 22 14 3.3457 13.5792 -0.0536 23 1 2.7398 14.6134 0.8231 24 1 4.5152 14.1554 -0.7646 25 1 2.3404 13.1205 -1.0457 26 6 3.1151 7.4965 2.2008 27 6 3.6605 6.0848 2.4402 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 2.1958 1.5431 2.4033 33 1 0.7987 2.3497 1.6510 34 1 2.2693 4.1999 0.9020 35 1 3.6668 3.3937 1.6541 36 1 3.3288 6.0671 5.2672 37 1 1.6701 5.4235 5.1607 38 1 1.7456 7.9368 5.3341 39 1 0.9569 7.3618 3.8449 40 1 3.8719 8.2384 4.0766 41 1 3.1663 10.3631 5.1853 42 1 1.4889 9.7711 5.2522 43 1 1.8506 11.3371 4.4867 44 1 4.3183 10.1028 2.5165 45 1 5.8147 12.2680 0.4670 46 1 2.1589 7.4342 1.6812 47 1 3.8229 8.0617 1.5946 48 1 4.6566 6.1470 2.8781 49 1 3.7099 5.5447 1.4948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753276079.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:24 Heat of formation + Delta-G solvation = -132.168687 kcal Electronic energy + Delta-G solvation = -29178.552968 eV Core-core repulsion = 25073.585780 eV Total energy + Delta-G solvation = -4104.967188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34763 -39.25709 -38.22903 -37.08896 -36.88679 -35.86379 -34.75020 -34.27779 -32.37755 -32.01873 -29.99374 -27.07921 -26.80018 -26.28821 -25.12518 -23.79862 -22.35497 -21.11196 -20.39765 -20.04600 -19.21863 -18.85325 -18.32473 -17.52522 -17.05573 -16.89617 -16.79574 -16.64989 -15.81432 -15.66738 -15.48010 -15.19457 -15.10551 -14.74749 -14.69074 -14.34921 -14.20699 -13.98855 -13.76894 -13.57166 -13.51635 -13.28567 -13.25265 -13.14438 -12.97456 -12.85777 -12.72478 -12.59592 -12.47044 -12.29238 -12.21300 -12.12524 -11.92377 -11.81471 -11.49526 -11.34768 -11.18127 -10.93692 -10.80136 -10.45064 -9.67031 -8.93443 -7.89976 -5.15846 -0.79971 1.48430 1.49700 1.51575 1.55710 1.72994 1.98737 2.58791 2.74319 3.20922 3.29433 3.43659 3.51124 3.77159 3.80384 3.84205 3.90974 4.16318 4.21454 4.26041 4.26606 4.41387 4.44578 4.49143 4.57140 4.61747 4.64844 4.77251 4.80705 4.83584 4.89647 4.93146 4.94460 5.02884 5.06572 5.09576 5.15409 5.27006 5.37109 5.49555 5.53530 5.62965 5.69955 6.11254 6.33048 6.34808 7.05874 7.39754 8.18031 8.41038 9.33006 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.002328 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.589863 B =12025.351654 C =13339.963184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.117 6.117 3 S 2.634 3.366 4 O -0.989 6.989 5 O -0.988 6.988 6 C -0.600 4.600 7 C -0.148 4.148 8 C 0.522 3.478 9 O -0.574 6.574 10 N -0.607 5.607 11 C 0.113 3.887 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.172 3.828 15 H 0.033 0.967 16 C -0.158 4.158 17 N -0.731 5.731 18 C -0.232 4.232 19 H 0.068 0.932 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.963 3.037 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.281 1.281 26 C -0.121 4.121 27 C 0.105 3.895 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.426 0.574 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.086 0.914 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 -25.777 4.422 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.878 5.878 3 S 2.726 3.274 4 O -0.979 6.979 5 O -0.978 6.978 6 C -0.731 4.731 7 C -0.189 4.189 8 C 0.310 3.690 9 O -0.455 6.455 10 N -0.339 5.339 11 C -0.009 4.009 12 C -0.156 4.156 13 C -0.100 4.100 14 C 0.064 3.936 15 H 0.052 0.948 16 C -0.217 4.217 17 N -0.371 5.371 18 C -0.364 4.364 19 H 0.086 0.914 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.793 3.207 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.207 1.207 26 C -0.159 4.159 27 C -0.018 4.018 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.424 -25.480 4.025 27.137 hybrid contribution 0.126 0.945 -0.103 0.959 sum -8.298 -24.536 3.922 26.196 Atomic orbital electron populations 1.21785 0.77497 1.06074 1.02438 1.55100 1.16755 1.23968 1.92004 1.04150 0.72779 0.73928 0.76504 1.93581 1.79197 1.73458 1.51632 1.93573 1.34738 1.81791 1.87745 1.30309 1.12406 1.06979 1.23389 1.21592 1.04294 0.95532 0.97508 1.20548 0.79334 0.80724 0.88364 1.90655 1.38101 1.63363 1.53333 1.48240 1.47427 1.18717 1.19507 1.21666 1.01528 0.93131 0.84567 1.21927 0.98076 0.94536 1.01075 1.21259 0.99180 0.93592 0.95957 1.20441 0.91983 0.90370 0.90815 0.94844 1.22365 1.00851 0.99964 0.98569 1.42555 1.07091 1.34738 1.52736 1.19491 0.93345 1.05682 1.17858 0.91369 1.25401 0.95714 1.02620 1.02852 1.69776 1.01776 1.43991 1.46228 0.85362 0.76477 0.80004 0.78828 1.20869 1.22354 1.20717 1.21799 1.01532 0.95009 0.97550 1.21993 0.93179 0.92417 0.94163 0.92155 0.87567 0.90648 0.73768 0.82897 0.83323 0.85961 0.85274 0.90102 0.89519 0.88955 0.92279 0.91243 0.93780 0.90827 0.95249 0.79400 0.94211 0.92658 0.91620 0.89601 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.03 127.77 1.41 1.84 16 2 N -1.12 -10.45 6.07 -206.54 -1.25 -11.70 16 3 S 2.63 40.04 5.46 -56.49 -0.31 39.74 16 4 O -0.99 -22.64 17.73 -127.65 -2.26 -24.90 16 5 O -0.99 -21.27 18.08 -127.65 -2.31 -23.58 16 6 C -0.60 -7.62 5.31 71.98 0.38 -7.24 16 7 C -0.15 -2.35 4.05 29.85 0.12 -2.23 16 8 C 0.52 11.49 7.70 87.66 0.67 12.16 16 9 O -0.57 -15.72 15.39 -3.05 -0.05 -15.76 16 10 N -0.61 -13.01 2.97 -818.87 -2.43 -15.44 16 11 C 0.11 2.37 6.43 86.36 0.56 2.93 16 12 C -0.12 -2.66 5.04 30.67 0.15 -2.50 16 13 C -0.08 -2.28 1.79 -10.77 -0.02 -2.29 16 14 C 0.17 6.28 2.47 44.99 0.11 6.39 16 15 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 16 C -0.16 -5.24 9.14 71.98 0.66 -4.58 16 17 N -0.73 -34.70 4.41 -322.95 -1.42 -36.12 16 18 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 19 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 21 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 22 Si 0.96 45.84 29.55 68.60 2.03 47.86 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 C -0.12 -3.37 5.22 30.68 0.16 -3.21 16 27 C 0.10 2.16 6.34 86.37 0.55 2.71 16 28 H 0.06 0.52 8.04 -2.39 -0.02 0.50 16 29 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.07 0.27 7.73 -2.38 -0.02 0.25 16 31 H 0.43 2.61 8.92 -96.74 -0.86 1.74 16 32 H 0.15 1.61 8.10 -2.39 -0.02 1.59 16 33 H 0.15 1.63 7.73 -2.39 -0.02 1.61 16 34 H 0.12 1.70 7.69 -2.39 -0.02 1.68 16 35 H 0.13 1.54 7.94 -2.39 -0.02 1.53 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.92 7.00 -2.39 -0.02 1.90 16 38 H 0.09 1.85 6.36 -2.39 -0.02 1.83 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.91 6.40 -2.39 -0.02 1.90 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.37 18.98 7.58 -92.70 -0.70 18.27 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.07 2.25 7.41 -2.39 -0.02 2.23 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.10 1.70 5.93 -2.39 -0.01 1.68 16 Total: -1.00 -78.51 400.21 -2.28 -80.79 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.61 Total: 27.90 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 6.06 Total: -11.37 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.83 Total: -120.67 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -4.62 Total: -64.25 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 40.04 SS G_CDS: -0.31 Total: 39.74 kcal Total: -78.51 -2.28 -80.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753276079.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.383 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds