Wall clock time and date at job start Wed Apr 1 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65599 * 119.99977 * 2 1 4 4 O 1.42100 * 104.27749 * 308.93021 * 3 2 1 5 5 O 1.42105 * 104.27621 * 181.07452 * 3 2 1 6 6 C 1.81397 * 104.44756 * 65.00266 * 3 2 1 7 7 C 1.53003 * 109.46960 * 179.97438 * 6 3 2 8 8 C 1.50705 * 109.47018 * 180.02562 * 7 6 3 9 9 O 1.21284 * 120.00096 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99969 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.63030 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.77292 * 233.62296 * 11 10 8 13 13 C 1.53031 * 109.31433 * 305.36553 * 12 11 10 14 14 C 1.53004 * 109.46199 * 181.38512 * 13 12 11 15 15 H 1.08995 * 109.47216 * 59.99867 * 14 13 12 16 16 C 1.52999 * 109.47083 * 299.99863 * 14 13 12 17 17 N 1.46498 * 109.47065 * 179.97438 * 14 13 12 18 18 C 1.36943 * 119.99752 * 204.72207 * 17 14 13 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 14 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 14 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.53038 * 109.54033 * 61.36367 * 13 12 11 27 27 C 1.46922 * 120.62904 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.46926 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46748 * 299.99345 * 1 2 3 30 30 H 1.08995 * 109.47147 * 59.99738 * 1 2 3 31 31 H 0.97003 * 119.99992 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46995 * 60.00093 * 6 3 2 33 33 H 1.08994 * 109.47416 * 300.00004 * 6 3 2 34 34 H 1.08992 * 109.46875 * 60.00406 * 7 6 3 35 35 H 1.09001 * 109.47344 * 299.99929 * 7 6 3 36 36 H 1.09005 * 109.58831 * 113.83815 * 11 10 8 37 37 H 1.08999 * 109.70287 * 353.47906 * 11 10 8 38 38 H 1.09000 * 109.49885 * 185.40858 * 12 11 10 39 39 H 1.09007 * 109.52267 * 65.33343 * 12 11 10 40 40 H 1.09003 * 109.46063 * 301.35614 * 13 12 11 41 41 H 1.08996 * 109.47245 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47098 * 300.00077 * 16 14 13 43 43 H 1.09003 * 109.47054 * 59.99725 * 16 14 13 44 44 H 0.97001 * 120.00384 * 25.00562 * 17 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.49860 * 58.58550 * 26 13 12 47 47 H 1.08998 * 109.50063 * 178.68763 * 26 13 12 48 48 H 1.09002 * 109.59312 * 246.16097 * 27 10 8 49 49 H 1.08994 * 109.58647 * 6.59357 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1703 -1.0713 5 8 3.6607 1.0492 -0.0258 6 6 1.8765 2.1972 1.5921 7 6 2.5900 3.5452 1.7137 8 6 2.2444 4.1789 3.0367 9 8 1.5003 3.6088 3.8062 10 7 2.7615 5.3797 3.3642 11 6 2.4344 6.0099 4.6505 12 6 1.9045 7.4228 4.3866 13 6 2.9240 8.1974 3.5484 14 6 2.4137 9.6203 3.3119 15 1 2.2759 10.1208 4.2703 16 6 1.0778 9.5660 2.5681 17 7 3.3899 10.3622 2.5101 18 6 3.4378 11.7288 2.5821 19 1 2.7590 12.2594 3.2333 20 6 4.3589 12.4322 1.8180 21 7 5.1857 11.7855 1.0239 22 14 4.4248 14.2964 1.9167 23 1 5.3737 14.7023 2.9844 24 1 4.8808 14.8452 0.6144 25 1 3.0723 14.8236 2.2297 26 6 3.1191 7.4955 2.2025 27 6 3.6630 6.0833 2.4418 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.9500 -0.8401 -0.0004 32 1 2.1959 1.5429 2.4032 33 1 0.7988 2.3496 1.6511 34 1 2.2710 4.1996 0.9026 35 1 3.6677 3.3925 1.6549 36 1 3.3304 6.0652 5.2687 37 1 1.6721 5.4236 5.1636 38 1 1.7485 7.9360 5.3354 39 1 0.9598 7.3625 3.8460 40 1 3.8755 8.2363 4.0787 41 1 0.7141 10.5796 2.4000 42 1 1.2157 9.0655 1.6097 43 1 0.3517 9.0141 3.1651 44 1 3.9995 9.8856 1.9251 45 1 5.8296 12.2770 0.4903 46 1 2.1632 7.4340 1.6823 47 1 3.8278 8.0604 1.5969 48 1 4.6592 6.1447 2.8800 49 1 3.7104 5.5447 1.4954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753276082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:27 Heat of formation + Delta-G solvation = -101.940628 kcal Electronic energy + Delta-G solvation = -29245.293980 eV Core-core repulsion = 25141.637579 eV Total energy + Delta-G solvation = -4103.656401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.42186 -38.19726 -37.48113 -36.33938 -35.48900 -35.43139 -33.76201 -32.88218 -31.11922 -30.58659 -28.28144 -26.44956 -26.18769 -24.92604 -23.59145 -23.15712 -21.47263 -19.88537 -19.52645 -18.71432 -18.12818 -17.62503 -17.20720 -16.85808 -16.26806 -16.05905 -15.95719 -15.13920 -14.91827 -14.45859 -14.44410 -14.25194 -14.04103 -13.78634 -13.65151 -13.31082 -13.28601 -13.03280 -12.75727 -12.63028 -12.46831 -12.36645 -12.22242 -12.06779 -11.97047 -11.90821 -11.62463 -11.41453 -11.26026 -11.05713 -10.85705 -10.62765 -10.37449 -10.31173 -10.15559 -10.07802 -9.94253 -9.70500 -9.56439 -8.92217 -8.70173 -6.96384 -5.78044 -3.05870 -0.17411 2.28153 2.40844 2.82611 3.36878 3.42383 3.48000 3.49327 3.81330 3.96523 4.28061 4.37971 4.51682 4.57448 4.75437 4.91115 4.94699 4.99763 5.02466 5.08584 5.14919 5.22676 5.27413 5.34103 5.37535 5.44950 5.53577 5.60836 5.74438 5.78766 5.93412 5.94946 6.09182 6.16370 6.22537 6.27905 6.44203 6.44275 6.51568 6.64382 6.73822 6.90184 7.13693 7.25753 7.69704 7.96444 8.41620 9.52646 10.10770 10.45134 11.44872 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017585 B = 0.002161 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.870607 B =12953.257305 C =13770.778867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.123 6.123 3 S 2.613 3.387 4 O -0.950 6.950 5 O -0.955 6.955 6 C -0.611 4.611 7 C -0.137 4.137 8 C 0.524 3.476 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.112 3.888 12 C -0.129 4.129 13 C -0.090 4.090 14 C 0.178 3.822 15 H 0.046 0.954 16 C -0.167 4.167 17 N -0.724 5.724 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.131 4.131 27 C 0.100 3.900 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.418 0.582 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -24.957 2.037 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.883 5.883 3 S 2.704 3.296 4 O -0.940 6.940 5 O -0.946 6.946 6 C -0.740 4.740 7 C -0.178 4.178 8 C 0.311 3.689 9 O -0.424 6.424 10 N -0.337 5.337 11 C -0.010 4.010 12 C -0.167 4.167 13 C -0.109 4.109 14 C 0.068 3.932 15 H 0.064 0.936 16 C -0.227 4.227 17 N -0.367 5.367 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.169 4.169 27 C -0.022 4.022 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.252 0.748 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.251 -24.585 1.777 25.994 hybrid contribution 0.116 0.654 0.415 0.783 sum -8.136 -23.932 2.192 25.372 Atomic orbital electron populations 1.21540 0.78606 1.04383 1.02154 1.55376 1.16077 1.24594 1.92217 1.04984 0.73773 0.73985 0.76827 1.93627 1.78747 1.72201 1.49450 1.93624 1.32559 1.81189 1.87190 1.30404 1.11857 1.07646 1.24133 1.21411 1.02721 0.94775 0.98905 1.20113 0.80078 0.80930 0.87787 1.90670 1.36838 1.62650 1.52242 1.48148 1.47433 1.18662 1.19490 1.21661 1.01033 0.94025 0.84293 1.22018 0.99584 0.94161 1.00944 1.21391 0.98705 0.95683 0.95165 1.20186 0.89256 0.89469 0.94281 0.93639 1.22537 0.98844 1.00950 1.00392 1.42488 1.39761 1.03620 1.50798 1.19239 1.14392 0.83013 1.20077 0.91309 1.24717 0.98889 0.97794 0.99645 1.69646 1.23799 1.34256 1.30588 0.86213 0.77486 0.85789 0.76842 1.21805 1.21828 1.20858 1.22012 1.02505 0.93700 0.98644 1.21982 0.93202 0.94074 0.92987 0.89899 0.92056 0.91179 0.74806 0.84121 0.84279 0.87007 0.87164 0.91449 0.89291 0.90713 0.91171 0.90978 0.93128 0.93326 0.94448 0.78197 0.93553 0.91202 0.89294 0.90638 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.03 59.85 0.66 0.97 16 2 N -1.12 -5.96 6.08 -16.63 -0.10 -6.06 16 3 S 2.61 20.87 5.46 -107.50 -0.59 20.29 16 4 O -0.95 -10.91 17.73 -57.54 -1.02 -11.93 16 5 O -0.96 -10.54 18.08 -57.54 -1.04 -11.58 16 6 C -0.61 -4.38 5.31 37.16 0.20 -4.19 16 7 C -0.14 -1.20 4.05 -27.88 -0.11 -1.31 16 8 C 0.52 6.20 7.70 -10.98 -0.08 6.12 16 9 O -0.55 -7.91 15.40 5.55 0.09 -7.82 16 10 N -0.60 -6.99 2.97 -172.76 -0.51 -7.51 16 11 C 0.11 1.30 6.43 -3.71 -0.02 1.27 16 12 C -0.13 -1.58 4.96 -26.62 -0.13 -1.71 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.52 16 14 C 0.18 3.30 2.72 -67.93 -0.18 3.12 16 15 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 16 C -0.17 -2.90 8.79 37.16 0.33 -2.58 16 17 N -0.72 -17.18 5.04 -53.43 -0.27 -17.45 16 18 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 22 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.79 4.82 -26.60 -0.13 -1.91 16 27 C 0.10 1.09 6.34 -3.70 -0.02 1.07 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.17 7.73 -51.93 -0.40 -0.23 16 30 H 0.07 0.32 8.04 -51.93 -0.42 -0.09 16 31 H 0.42 1.55 8.92 -34.47 -0.31 1.24 16 32 H 0.14 0.89 8.10 -51.92 -0.42 0.47 16 33 H 0.14 0.89 7.73 -51.93 -0.40 0.49 16 34 H 0.11 0.84 7.69 -51.93 -0.40 0.44 16 35 H 0.11 0.77 7.94 -51.93 -0.41 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 43 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 44 H 0.38 9.49 6.04 -40.82 -0.25 9.24 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 47 H 0.09 1.40 6.46 -51.93 -0.34 1.07 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -36.82 395.03 -9.60 -46.42 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.86 Total: 7.07 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 0.06 Total: -7.70 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.16 Total: -57.82 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.97 Total: -31.34 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 20.87 SS G_CDS: -0.59 Total: 20.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.82 -9.60 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753276082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.522 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds