Wall clock time and date at job start Wed Apr 1 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09005 * 109.52632 * 2 1 4 4 C 1.53038 * 109.49810 * 120.08106 * 2 1 3 5 5 C 1.53041 * 109.54118 * 181.31685 * 4 2 1 6 6 C 1.53623 * 109.24152 * 298.51493 * 5 4 2 7 7 N 1.46920 * 108.54636 * 54.85075 * 6 5 4 8 8 C 1.34783 * 120.63072 * 126.36970 * 7 6 5 9 9 O 1.21278 * 120.00156 * 173.78915 * 8 7 6 10 10 C 1.50701 * 119.99859 * 353.78802 * 8 7 6 11 11 N 1.46498 * 109.46948 * 179.97438 * 10 8 7 12 12 C 1.46501 * 119.99309 * 85.00584 * 11 10 8 13 13 S 1.65599 * 120.00295 * 265.00186 * 11 10 8 14 14 C 1.81394 * 104.44864 * 270.00223 * 13 11 10 15 15 O 1.42100 * 104.27687 * 26.07399 * 13 11 10 16 16 O 1.42099 * 104.27625 * 153.93184 * 13 11 10 17 17 C 1.46927 * 118.74031 * 306.09734 * 7 6 5 18 18 H 1.08998 * 109.58838 * 293.92535 * 17 7 6 19 19 C 1.52999 * 109.58748 * 173.64222 * 17 7 6 20 20 N 1.46496 * 109.47672 * 301.81592 * 19 17 7 21 21 C 1.36935 * 120.00541 * 185.35259 * 20 19 17 22 22 H 1.07998 * 119.99675 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00317 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00206 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00133 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47013 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47018 * 120.00296 * 25 23 21 28 28 H 1.48504 * 109.47362 * 240.00283 * 25 23 21 29 29 H 1.08997 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47543 * 300.08395 * 1 2 3 31 31 H 1.09010 * 109.47402 * 60.07685 * 1 2 3 32 32 H 1.09005 * 109.46225 * 301.33824 * 4 2 1 33 33 H 1.09004 * 109.46072 * 61.30983 * 4 2 1 34 34 H 1.08997 * 109.49463 * 58.58668 * 5 4 2 35 35 H 1.08992 * 109.49904 * 178.65099 * 5 4 2 36 36 H 1.09007 * 109.73519 * 295.11648 * 6 5 4 37 37 H 1.08999 * 109.66375 * 174.54952 * 6 5 4 38 38 H 1.09003 * 109.46542 * 60.00188 * 10 8 7 39 39 H 1.08991 * 109.47212 * 300.00128 * 10 8 7 40 40 H 1.09000 * 109.47094 * 90.00193 * 12 11 10 41 41 H 1.08994 * 109.47694 * 329.99279 * 12 11 10 42 42 H 1.09003 * 109.46506 * 209.99802 * 12 11 10 43 43 H 1.09005 * 109.47478 * 60.00236 * 14 13 11 44 44 H 1.09000 * 109.47250 * 180.02562 * 14 13 11 45 45 H 1.08999 * 109.47670 * 300.00080 * 14 13 11 46 46 H 1.09008 * 109.46995 * 61.81455 * 19 17 7 47 47 H 1.08999 * 109.47386 * 181.81227 * 19 17 7 48 48 H 0.97000 * 119.99742 * 5.34987 * 20 19 17 49 49 H 0.96995 * 120.00638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2660 6 6 4.1050 -1.4317 0.0283 7 7 3.5046 -0.8291 -1.1695 8 6 4.2811 -0.3864 -2.1783 9 8 3.7732 0.0050 -3.2077 10 6 5.7805 -0.3777 -2.0270 11 7 6.3918 0.1439 -3.2519 12 6 6.5428 1.5893 -3.4370 13 16 6.9123 -0.9003 -4.4271 14 6 8.6364 -1.2534 -3.9876 15 8 6.1057 -2.0568 -4.2505 16 8 6.8490 -0.1390 -5.6253 17 6 2.0413 -0.7238 -1.2496 18 1 1.6053 -1.7215 -1.3006 19 6 1.6517 0.0706 -2.4978 20 7 2.2687 1.3982 -2.4442 21 6 1.9734 2.3298 -3.4034 22 1 1.2853 2.0859 -4.1992 23 6 2.5576 3.5879 -3.3522 24 7 3.3959 3.8853 -2.3820 25 14 2.1543 4.8589 -4.6603 26 1 1.1919 4.2807 -5.6322 27 1 1.5512 6.0549 -4.0190 28 1 3.3986 5.2519 -5.3692 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5151 0.8892 31 1 -0.3634 0.5127 -0.8907 32 1 1.6581 -0.2245 2.1389 33 1 1.6968 -1.7574 1.2352 34 1 3.9158 0.3388 1.2541 35 1 3.9333 -1.1892 2.1673 36 1 3.8337 -2.4862 0.0820 37 1 5.1895 -1.3332 -0.0174 38 1 6.1335 -1.3935 -1.8492 39 1 6.0569 0.2558 -1.1843 40 1 7.5057 1.9081 -3.0380 41 1 5.7416 2.1086 -2.9113 42 1 6.4934 1.8265 -4.4998 43 1 8.6734 -1.7053 -2.9963 44 1 9.0637 -1.9414 -4.7171 45 1 9.2082 -0.3255 -3.9854 46 1 1.9994 -0.4560 -3.3867 47 1 0.5675 0.1752 -2.5383 48 1 2.8864 1.6174 -1.7291 49 1 3.8045 4.7643 -2.3464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753820611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:40 Heat of formation + Delta-G solvation = -73.046310 kcal Electronic energy + Delta-G solvation = -32171.149365 eV Core-core repulsion = 28068.745917 eV Total energy + Delta-G solvation = -4102.403449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50590 -38.66517 -38.16981 -37.00346 -36.76648 -36.03887 -34.59712 -33.53275 -31.72614 -30.30451 -30.00705 -28.17476 -26.98109 -26.20864 -25.19693 -24.03769 -22.23165 -21.38468 -20.04871 -19.51168 -19.16035 -18.59686 -17.89536 -17.35163 -17.10724 -16.79758 -16.33000 -16.04656 -15.70189 -15.52356 -15.25268 -15.05150 -14.81217 -14.64981 -14.39795 -14.03996 -13.97165 -13.89848 -13.81853 -13.60910 -13.35957 -13.24872 -13.14594 -13.13303 -13.02592 -12.82648 -12.67431 -12.54302 -12.39272 -12.37556 -12.09372 -11.98012 -11.89159 -11.67365 -11.57811 -11.39550 -11.07463 -10.87463 -10.39560 -9.45183 -9.30801 -8.55858 -7.80309 -4.96917 -0.71177 1.41009 1.43806 1.51401 1.63421 2.09235 2.31063 2.62656 3.08712 3.17101 3.51507 3.71617 3.74737 3.93188 4.00400 4.09120 4.10431 4.17687 4.19131 4.29182 4.32692 4.41757 4.50676 4.55011 4.68818 4.71230 4.71939 4.87160 4.91321 4.92837 4.96631 5.02550 5.05040 5.07554 5.20315 5.26446 5.30657 5.37018 5.47460 5.48335 5.54049 5.55431 5.67751 5.94210 6.42159 6.79995 7.49620 7.72200 8.28155 8.56376 9.43096 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008312 B = 0.006195 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.675149 B = 4518.740856 C = 6947.256894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.043 0.957 4 C -0.106 4.106 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.619 5.619 8 C 0.459 3.541 9 O -0.513 6.513 10 C 0.111 3.889 11 N -0.982 5.982 12 C 0.098 3.902 13 S 2.591 3.409 14 C -0.633 4.633 15 O -0.993 6.993 16 O -1.008 7.008 17 C 0.154 3.846 18 H 0.082 0.918 19 C 0.156 3.844 20 N -0.696 5.696 21 C -0.209 4.209 22 H 0.046 0.954 23 C -0.069 4.069 24 N -0.956 5.956 25 Si 0.950 3.050 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.298 1.298 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.014 0.986 47 H 0.008 0.992 48 H 0.374 0.626 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 -15.586 11.854 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.061 0.939 4 C -0.144 4.144 5 C -0.169 4.169 6 C -0.019 4.019 7 N -0.356 5.356 8 C 0.245 3.755 9 O -0.385 6.385 10 C -0.018 4.018 11 N -0.817 5.817 12 C -0.048 4.048 13 S 2.690 3.310 14 C -0.788 4.788 15 O -0.983 6.983 16 O -0.999 6.999 17 C 0.050 3.950 18 H 0.100 0.900 19 C 0.029 3.971 20 N -0.339 5.339 21 C -0.342 4.342 22 H 0.064 0.936 23 C -0.261 4.261 24 N -0.609 5.609 25 Si 0.782 3.218 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.226 1.226 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.155 0.845 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.181 0.819 44 H 0.167 0.833 45 H 0.170 0.830 46 H 0.032 0.968 47 H 0.025 0.975 48 H 0.207 0.793 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.958 -15.613 10.373 21.713 hybrid contribution -0.075 1.551 -0.775 1.735 sum 10.883 -14.062 9.598 20.207 Atomic orbital electron populations 1.21720 0.94378 1.02146 1.01229 1.21376 0.96229 0.98935 0.94812 0.93881 1.21550 0.95929 1.00901 0.95990 1.21990 0.95602 1.00793 0.98507 1.22126 0.99291 0.97538 0.82951 1.48140 1.05588 1.62538 1.19354 1.21820 0.91272 0.78165 0.84263 1.90933 1.73977 1.43874 1.29739 1.21359 0.88994 1.02912 0.88534 1.56834 1.73862 1.17143 1.33878 1.21426 1.02595 0.79050 1.01726 1.05234 0.79850 0.72780 0.73125 1.30261 1.19668 1.14003 1.14871 1.93540 1.67800 1.51138 1.85836 1.93527 1.88380 1.71092 1.46866 1.21362 0.80690 0.98152 0.94812 0.90017 1.20959 0.93407 0.86880 0.95813 1.42111 1.53004 1.08987 1.29769 1.19360 1.18619 0.92752 1.03436 0.93572 1.25058 1.01286 0.99039 1.00695 1.69741 1.35608 1.20937 1.34626 0.85389 0.76730 0.80094 0.79543 1.21031 1.21833 1.22577 0.90974 0.91885 0.94825 0.91193 0.90208 0.93269 0.87616 0.89520 0.87653 0.84467 0.85417 0.88872 0.92810 0.93101 0.81904 0.83307 0.83049 0.96841 0.97456 0.79284 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.97 71.98 0.65 -3.25 16 2 C -0.09 -2.87 2.24 -10.72 -0.02 -2.89 16 3 H 0.04 1.71 6.93 -2.38 -0.02 1.70 16 4 C -0.11 -2.19 5.16 30.62 0.16 -2.03 16 5 C -0.13 -2.33 6.10 30.82 0.19 -2.14 16 6 C 0.10 1.92 6.38 86.51 0.55 2.47 16 7 N -0.62 -19.39 2.84 -794.19 -2.26 -21.65 16 8 C 0.46 17.53 6.60 87.66 0.58 18.11 16 9 O -0.51 -26.14 10.79 -3.02 -0.03 -26.17 16 10 C 0.11 2.96 4.08 85.63 0.35 3.31 16 11 N -0.98 -29.67 2.61 -543.24 -1.42 -31.08 16 12 C 0.10 3.35 10.65 127.77 1.36 4.71 16 13 S 2.59 73.62 6.01 -56.49 -0.34 73.28 16 14 C -0.63 -7.23 10.99 113.37 1.25 -5.98 16 15 O -0.99 -34.47 16.99 -127.65 -2.17 -36.64 16 16 O -1.01 -39.34 16.57 -127.65 -2.12 -41.46 16 17 C 0.15 5.30 2.62 44.97 0.12 5.42 16 18 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 19 C 0.16 7.34 4.82 86.38 0.42 7.75 16 20 N -0.70 -38.09 2.90 -343.46 -1.00 -39.08 16 21 C -0.21 -12.91 9.83 84.03 0.83 -12.08 16 22 H 0.05 2.94 7.83 -2.91 -0.02 2.92 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.96 -59.02 13.06 21.65 0.28 -58.74 16 25 Si 0.95 50.74 29.55 68.60 2.03 52.77 16 26 H -0.28 -15.04 7.11 99.48 0.71 -14.34 16 27 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 28 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.16 6.58 -2.38 -0.02 1.14 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.11 1.37 5.93 -2.39 -0.01 1.35 16 38 H 0.14 2.40 7.15 -2.39 -0.02 2.38 16 39 H 0.13 2.71 7.91 -2.39 -0.02 2.69 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.38 8.07 -2.39 -0.02 2.36 16 42 H 0.05 2.00 6.91 -2.39 -0.02 1.98 16 43 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.01 0.75 6.22 -2.38 -0.01 0.73 16 47 H 0.01 0.37 6.55 -2.39 -0.02 0.35 16 48 H 0.37 20.97 5.76 -92.71 -0.53 20.43 16 49 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -94.24 388.44 0.27 -93.96 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.41 Total: 25.18 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.88 Total: 9.63 kcal Atomic # 7 Polarization: -146.16 SS G_CDS: -4.39 Total: -150.55 kcal Atomic # 8 Polarization: -99.96 SS G_CDS: -4.32 Total: -104.27 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.03 Total: 52.77 kcal Atomic # 16 Polarization: 73.62 SS G_CDS: -0.34 Total: 73.28 kcal Total: -94.24 0.27 -93.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753820611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -94.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds