Wall clock time and date at job start Wed Apr 1 2020 05:02:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 H 1.09005 * 109.52632 * 2 1
4 4 C 1.53038 * 109.49810 * 120.08106 * 2 1 3
5 5 C 1.53041 * 109.54118 * 181.31685 * 4 2 1
6 6 C 1.53623 * 109.24152 * 298.51493 * 5 4 2
7 7 N 1.46920 * 108.54636 * 54.85075 * 6 5 4
8 8 C 1.34783 * 120.63072 * 126.36970 * 7 6 5
9 9 O 1.21278 * 120.00156 * 173.78915 * 8 7 6
10 10 C 1.50701 * 119.99859 * 353.78802 * 8 7 6
11 11 N 1.46498 * 109.46948 * 179.97438 * 10 8 7
12 12 C 1.46501 * 119.99309 * 85.00584 * 11 10 8
13 13 S 1.65599 * 120.00295 * 265.00186 * 11 10 8
14 14 C 1.81394 * 104.44864 * 270.00223 * 13 11 10
15 15 O 1.42100 * 104.27687 * 26.07399 * 13 11 10
16 16 O 1.42099 * 104.27625 * 153.93184 * 13 11 10
17 17 C 1.46927 * 118.74031 * 306.09734 * 7 6 5
18 18 H 1.08998 * 109.58838 * 293.92535 * 17 7 6
19 19 C 1.52999 * 109.58748 * 173.64222 * 17 7 6
20 20 N 1.46496 * 109.47672 * 301.81592 * 19 17 7
21 21 C 1.36935 * 120.00541 * 185.35259 * 20 19 17
22 22 H 1.07998 * 119.99675 * 0.02562 * 21 20 19
23 23 C 1.38807 * 120.00317 * 179.97438 * 21 20 19
24 24 N 1.31623 * 120.00206 * 0.02562 * 23 21 20
25 25 Si 1.86798 * 120.00133 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47013 * 0.02562 * 25 23 21
27 27 H 1.48502 * 109.47018 * 120.00296 * 25 23 21
28 28 H 1.48504 * 109.47362 * 240.00283 * 25 23 21
29 29 H 1.08997 * 109.47653 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47543 * 300.08395 * 1 2 3
31 31 H 1.09010 * 109.47402 * 60.07685 * 1 2 3
32 32 H 1.09005 * 109.46225 * 301.33824 * 4 2 1
33 33 H 1.09004 * 109.46072 * 61.30983 * 4 2 1
34 34 H 1.08997 * 109.49463 * 58.58668 * 5 4 2
35 35 H 1.08992 * 109.49904 * 178.65099 * 5 4 2
36 36 H 1.09007 * 109.73519 * 295.11648 * 6 5 4
37 37 H 1.08999 * 109.66375 * 174.54952 * 6 5 4
38 38 H 1.09003 * 109.46542 * 60.00188 * 10 8 7
39 39 H 1.08991 * 109.47212 * 300.00128 * 10 8 7
40 40 H 1.09000 * 109.47094 * 90.00193 * 12 11 10
41 41 H 1.08994 * 109.47694 * 329.99279 * 12 11 10
42 42 H 1.09003 * 109.46506 * 209.99802 * 12 11 10
43 43 H 1.09005 * 109.47478 * 60.00236 * 14 13 11
44 44 H 1.09000 * 109.47250 * 180.02562 * 14 13 11
45 45 H 1.08999 * 109.47670 * 300.00080 * 14 13 11
46 46 H 1.09008 * 109.46995 * 61.81455 * 19 17 7
47 47 H 1.08999 * 109.47386 * 181.81227 * 19 17 7
48 48 H 0.97000 * 119.99742 * 5.34987 * 20 19 17
49 49 H 0.96995 * 120.00638 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8942 1.0274 0.0000
4 6 2.0407 -0.7231 1.2483
5 6 3.5708 -0.6950 1.2660
6 6 4.1050 -1.4317 0.0283
7 7 3.5046 -0.8291 -1.1695
8 6 4.2811 -0.3864 -2.1783
9 8 3.7732 0.0050 -3.2077
10 6 5.7805 -0.3777 -2.0270
11 7 6.3918 0.1439 -3.2519
12 6 6.5428 1.5893 -3.4370
13 16 6.9123 -0.9003 -4.4271
14 6 8.6364 -1.2534 -3.9876
15 8 6.1057 -2.0568 -4.2505
16 8 6.8490 -0.1390 -5.6253
17 6 2.0413 -0.7238 -1.2496
18 1 1.6053 -1.7215 -1.3006
19 6 1.6517 0.0706 -2.4978
20 7 2.2687 1.3982 -2.4442
21 6 1.9734 2.3298 -3.4034
22 1 1.2853 2.0859 -4.1992
23 6 2.5576 3.5879 -3.3522
24 7 3.3959 3.8853 -2.3820
25 14 2.1543 4.8589 -4.6603
26 1 1.1919 4.2807 -5.6322
27 1 1.5512 6.0549 -4.0190
28 1 3.3986 5.2519 -5.3692
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5151 0.8892
31 1 -0.3634 0.5127 -0.8907
32 1 1.6581 -0.2245 2.1389
33 1 1.6968 -1.7574 1.2352
34 1 3.9158 0.3388 1.2541
35 1 3.9333 -1.1892 2.1673
36 1 3.8337 -2.4862 0.0820
37 1 5.1895 -1.3332 -0.0174
38 1 6.1335 -1.3935 -1.8492
39 1 6.0569 0.2558 -1.1843
40 1 7.5057 1.9081 -3.0380
41 1 5.7416 2.1086 -2.9113
42 1 6.4934 1.8265 -4.4998
43 1 8.6734 -1.7053 -2.9963
44 1 9.0637 -1.9414 -4.7171
45 1 9.2082 -0.3255 -3.9854
46 1 1.9994 -0.4560 -3.3867
47 1 0.5675 0.1752 -2.5383
48 1 2.8864 1.6174 -1.7291
49 1 3.8045 4.7643 -2.3464
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753820611.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:40
Heat of formation + Delta-G solvation = -73.046310 kcal
Electronic energy + Delta-G solvation = -32171.149365 eV
Core-core repulsion = 28068.745917 eV
Total energy + Delta-G solvation = -4102.403449 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.50590 -38.66517 -38.16981 -37.00346 -36.76648 -36.03887 -34.59712 -33.53275
-31.72614 -30.30451 -30.00705 -28.17476 -26.98109 -26.20864 -25.19693 -24.03769
-22.23165 -21.38468 -20.04871 -19.51168 -19.16035 -18.59686 -17.89536 -17.35163
-17.10724 -16.79758 -16.33000 -16.04656 -15.70189 -15.52356 -15.25268 -15.05150
-14.81217 -14.64981 -14.39795 -14.03996 -13.97165 -13.89848 -13.81853 -13.60910
-13.35957 -13.24872 -13.14594 -13.13303 -13.02592 -12.82648 -12.67431 -12.54302
-12.39272 -12.37556 -12.09372 -11.98012 -11.89159 -11.67365 -11.57811 -11.39550
-11.07463 -10.87463 -10.39560 -9.45183 -9.30801 -8.55858 -7.80309 -4.96917
-0.71177 1.41009 1.43806 1.51401 1.63421 2.09235 2.31063 2.62656
3.08712 3.17101 3.51507 3.71617 3.74737 3.93188 4.00400 4.09120
4.10431 4.17687 4.19131 4.29182 4.32692 4.41757 4.50676 4.55011
4.68818 4.71230 4.71939 4.87160 4.91321 4.92837 4.96631 5.02550
5.05040 5.07554 5.20315 5.26446 5.30657 5.37018 5.47460 5.48335
5.54049 5.55431 5.67751 5.94210 6.42159 6.79995 7.49620 7.72200
8.28155 8.56376 9.43096
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008312 B = 0.006195 C = 0.004029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3367.675149 B = 4518.740856 C = 6947.256894
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.094 4.094
3 H 0.043 0.957
4 C -0.106 4.106
5 C -0.131 4.131
6 C 0.102 3.898
7 N -0.619 5.619
8 C 0.459 3.541
9 O -0.513 6.513
10 C 0.111 3.889
11 N -0.982 5.982
12 C 0.098 3.902
13 S 2.591 3.409
14 C -0.633 4.633
15 O -0.993 6.993
16 O -1.008 7.008
17 C 0.154 3.846
18 H 0.082 0.918
19 C 0.156 3.844
20 N -0.696 5.696
21 C -0.209 4.209
22 H 0.046 0.954
23 C -0.069 4.069
24 N -0.956 5.956
25 Si 0.950 3.050
26 H -0.285 1.285
27 H -0.291 1.291
28 H -0.298 1.298
29 H 0.071 0.929
30 H 0.062 0.938
31 H 0.033 0.967
32 H 0.069 0.931
33 H 0.079 0.921
34 H 0.048 0.952
35 H 0.106 0.894
36 H 0.087 0.913
37 H 0.105 0.895
38 H 0.138 0.862
39 H 0.128 0.872
40 H 0.093 0.907
41 H 0.053 0.947
42 H 0.050 0.950
43 H 0.163 0.837
44 H 0.149 0.851
45 H 0.151 0.849
46 H 0.014 0.986
47 H 0.008 0.992
48 H 0.374 0.626
49 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.866 -15.586 11.854 22.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.114 4.114
3 H 0.061 0.939
4 C -0.144 4.144
5 C -0.169 4.169
6 C -0.019 4.019
7 N -0.356 5.356
8 C 0.245 3.755
9 O -0.385 6.385
10 C -0.018 4.018
11 N -0.817 5.817
12 C -0.048 4.048
13 S 2.690 3.310
14 C -0.788 4.788
15 O -0.983 6.983
16 O -0.999 6.999
17 C 0.050 3.950
18 H 0.100 0.900
19 C 0.029 3.971
20 N -0.339 5.339
21 C -0.342 4.342
22 H 0.064 0.936
23 C -0.261 4.261
24 N -0.609 5.609
25 Si 0.782 3.218
26 H -0.210 1.210
27 H -0.218 1.218
28 H -0.226 1.226
29 H 0.090 0.910
30 H 0.081 0.919
31 H 0.052 0.948
32 H 0.088 0.912
33 H 0.098 0.902
34 H 0.067 0.933
35 H 0.124 0.876
36 H 0.105 0.895
37 H 0.123 0.877
38 H 0.155 0.845
39 H 0.146 0.854
40 H 0.111 0.889
41 H 0.072 0.928
42 H 0.069 0.931
43 H 0.181 0.819
44 H 0.167 0.833
45 H 0.170 0.830
46 H 0.032 0.968
47 H 0.025 0.975
48 H 0.207 0.793
49 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 10.958 -15.613 10.373 21.713
hybrid contribution -0.075 1.551 -0.775 1.735
sum 10.883 -14.062 9.598 20.207
Atomic orbital electron populations
1.21720 0.94378 1.02146 1.01229 1.21376 0.96229 0.98935 0.94812
0.93881 1.21550 0.95929 1.00901 0.95990 1.21990 0.95602 1.00793
0.98507 1.22126 0.99291 0.97538 0.82951 1.48140 1.05588 1.62538
1.19354 1.21820 0.91272 0.78165 0.84263 1.90933 1.73977 1.43874
1.29739 1.21359 0.88994 1.02912 0.88534 1.56834 1.73862 1.17143
1.33878 1.21426 1.02595 0.79050 1.01726 1.05234 0.79850 0.72780
0.73125 1.30261 1.19668 1.14003 1.14871 1.93540 1.67800 1.51138
1.85836 1.93527 1.88380 1.71092 1.46866 1.21362 0.80690 0.98152
0.94812 0.90017 1.20959 0.93407 0.86880 0.95813 1.42111 1.53004
1.08987 1.29769 1.19360 1.18619 0.92752 1.03436 0.93572 1.25058
1.01286 0.99039 1.00695 1.69741 1.35608 1.20937 1.34626 0.85389
0.76730 0.80094 0.79543 1.21031 1.21833 1.22577 0.90974 0.91885
0.94825 0.91193 0.90208 0.93269 0.87616 0.89520 0.87653 0.84467
0.85417 0.88872 0.92810 0.93101 0.81904 0.83307 0.83049 0.96841
0.97456 0.79284 0.94642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.90 8.97 71.98 0.65 -3.25 16
2 C -0.09 -2.87 2.24 -10.72 -0.02 -2.89 16
3 H 0.04 1.71 6.93 -2.38 -0.02 1.70 16
4 C -0.11 -2.19 5.16 30.62 0.16 -2.03 16
5 C -0.13 -2.33 6.10 30.82 0.19 -2.14 16
6 C 0.10 1.92 6.38 86.51 0.55 2.47 16
7 N -0.62 -19.39 2.84 -794.19 -2.26 -21.65 16
8 C 0.46 17.53 6.60 87.66 0.58 18.11 16
9 O -0.51 -26.14 10.79 -3.02 -0.03 -26.17 16
10 C 0.11 2.96 4.08 85.63 0.35 3.31 16
11 N -0.98 -29.67 2.61 -543.24 -1.42 -31.08 16
12 C 0.10 3.35 10.65 127.77 1.36 4.71 16
13 S 2.59 73.62 6.01 -56.49 -0.34 73.28 16
14 C -0.63 -7.23 10.99 113.37 1.25 -5.98 16
15 O -0.99 -34.47 16.99 -127.65 -2.17 -36.64 16
16 O -1.01 -39.34 16.57 -127.65 -2.12 -41.46 16
17 C 0.15 5.30 2.62 44.97 0.12 5.42 16
18 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16
19 C 0.16 7.34 4.82 86.38 0.42 7.75 16
20 N -0.70 -38.09 2.90 -343.46 -1.00 -39.08 16
21 C -0.21 -12.91 9.83 84.03 0.83 -12.08 16
22 H 0.05 2.94 7.83 -2.91 -0.02 2.92 16
23 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16
24 N -0.96 -59.02 13.06 21.65 0.28 -58.74 16
25 Si 0.95 50.74 29.55 68.60 2.03 52.77 16
26 H -0.28 -15.04 7.11 99.48 0.71 -14.34 16
27 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16
28 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16
29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.03 1.16 6.58 -2.38 -0.02 1.14 16
32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
35 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16
36 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16
37 H 0.11 1.37 5.93 -2.39 -0.01 1.35 16
38 H 0.14 2.40 7.15 -2.39 -0.02 2.38 16
39 H 0.13 2.71 7.91 -2.39 -0.02 2.69 16
40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
41 H 0.05 2.38 8.07 -2.39 -0.02 2.36 16
42 H 0.05 2.00 6.91 -2.39 -0.02 1.98 16
43 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16
44 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16
45 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16
46 H 0.01 0.75 6.22 -2.38 -0.01 0.73 16
47 H 0.01 0.37 6.55 -2.39 -0.02 0.35 16
48 H 0.37 20.97 5.76 -92.71 -0.53 20.43 16
49 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16
Total: -1.00 -94.24 388.44 0.27 -93.96
By element:
Atomic # 1 Polarization: 24.77 SS G_CDS: 0.41 Total: 25.18 kcal
Atomic # 6 Polarization: 2.75 SS G_CDS: 6.88 Total: 9.63 kcal
Atomic # 7 Polarization: -146.16 SS G_CDS: -4.39 Total: -150.55 kcal
Atomic # 8 Polarization: -99.96 SS G_CDS: -4.32 Total: -104.27 kcal
Atomic # 14 Polarization: 50.74 SS G_CDS: 2.03 Total: 52.77 kcal
Atomic # 16 Polarization: 73.62 SS G_CDS: -0.34 Total: 73.28 kcal
Total: -94.24 0.27 -93.96 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753820611.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal
(2) G-P(sol) polarization free energy of solvation -94.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.961 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.046 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds