Wall clock time and date at job start Wed Apr 1 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.49838 * 2 1 4 4 C 1.53041 * 109.52632 * 239.91323 * 2 1 3 5 5 C 1.53041 * 109.53571 * 301.40628 * 4 2 1 6 6 C 1.53624 * 109.24135 * 298.50203 * 5 4 2 7 7 N 1.46931 * 108.53895 * 54.86313 * 6 5 4 8 8 C 1.34770 * 120.63048 * 126.36842 * 7 6 5 9 9 O 1.21282 * 120.00039 * 174.57093 * 8 7 6 10 10 C 1.50699 * 120.00015 * 354.57293 * 8 7 6 11 11 N 1.46507 * 109.47310 * 179.97438 * 10 8 7 12 12 C 1.46503 * 119.99971 * 84.99681 * 11 10 8 13 13 S 1.65599 * 119.99915 * 265.00366 * 11 10 8 14 14 C 1.81399 * 104.44583 * 269.99473 * 13 11 10 15 15 O 1.42093 * 104.27941 * 26.06746 * 13 11 10 16 16 O 1.42103 * 104.27694 * 153.92738 * 13 11 10 17 17 C 1.46929 * 118.73826 * 306.08881 * 7 6 5 18 18 H 1.08997 * 109.58577 * 294.07714 * 17 7 6 19 19 C 1.52995 * 109.58485 * 173.64746 * 17 7 6 20 20 N 1.46502 * 109.46968 * 73.28077 * 19 17 7 21 21 C 1.36939 * 120.00023 * 174.77302 * 20 19 17 22 22 H 1.07996 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00086 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99914 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46905 * 60.00403 * 25 23 21 27 27 H 1.48497 * 109.47221 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47242 * 300.00439 * 25 23 21 29 29 H 1.09005 * 109.47095 * 299.93870 * 1 2 3 30 30 H 1.09000 * 109.46882 * 59.93245 * 1 2 3 31 31 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.45476 * 61.41953 * 4 2 1 33 33 H 1.08994 * 109.46073 * 181.38279 * 4 2 1 34 34 H 1.08998 * 109.50585 * 58.58031 * 5 4 2 35 35 H 1.09002 * 109.49856 * 178.65131 * 5 4 2 36 36 H 1.08996 * 109.74414 * 295.12470 * 6 5 4 37 37 H 1.08996 * 109.66548 * 174.54829 * 6 5 4 38 38 H 1.09003 * 109.47284 * 60.00192 * 10 8 7 39 39 H 1.08992 * 109.47229 * 299.99598 * 10 8 7 40 40 H 1.08999 * 109.46784 * 90.00101 * 12 11 10 41 41 H 1.09004 * 109.46757 * 330.00413 * 12 11 10 42 42 H 1.08997 * 109.47125 * 210.00197 * 12 11 10 43 43 H 1.09001 * 109.47367 * 60.00178 * 14 13 11 44 44 H 1.09006 * 109.47125 * 179.97438 * 14 13 11 45 45 H 1.09001 * 109.47356 * 300.00081 * 14 13 11 46 46 H 1.09005 * 109.46897 * 193.27584 * 19 17 7 47 47 H 1.08998 * 109.47675 * 313.28030 * 19 17 7 48 48 H 0.97004 * 119.99972 * 354.76617 * 20 19 17 49 49 H 0.96999 * 120.00374 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7231 -1.2481 5 6 1.5042 -2.1560 -1.2656 6 6 2.0201 -2.9053 -0.0278 7 7 1.6520 -2.1380 1.1699 8 6 0.9752 -2.7220 2.1785 9 8 0.7631 -2.1075 3.2024 10 6 0.4820 -4.1386 2.0341 11 7 -0.2172 -4.5395 3.2575 12 6 -1.6347 -4.2125 3.4317 13 16 0.5946 -5.3619 4.4436 14 6 0.3726 -7.1105 4.0149 15 8 1.9511 -4.9750 4.2727 16 8 -0.1125 -5.0470 5.6353 17 6 2.0413 -0.7234 1.2499 18 1 3.1273 -0.6455 1.2986 19 6 1.4221 -0.0909 2.4979 20 7 2.1266 -0.5710 3.6893 21 6 1.8174 -0.0580 4.9208 22 1 1.0545 0.7007 5.0136 23 6 2.4845 -0.5132 6.0497 24 7 3.4140 -1.4383 5.9366 25 14 2.0632 0.1870 7.7295 26 1 0.6321 -0.0729 8.0293 27 1 2.9104 -0.4611 8.7626 28 1 2.3115 1.6510 7.7320 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6995 -0.1961 -2.1388 33 1 3.1312 -0.7440 -1.2346 34 1 0.4145 -2.1362 -1.2540 35 1 1.8493 -2.6629 -2.1668 36 1 3.1045 -3.0017 -0.0811 37 1 1.5651 -3.8947 0.0181 38 1 1.3296 -4.8032 1.8662 39 1 -0.2017 -4.2008 1.1875 40 1 -2.2458 -5.0229 3.0344 41 1 -1.8629 -3.2899 2.8979 42 1 -1.8497 -4.0815 4.4922 43 1 0.7941 -7.2989 3.0276 44 1 0.8812 -7.7326 4.7515 45 1 -0.6906 -7.3507 4.0079 46 1 1.5093 0.9939 2.4367 47 1 0.3699 -0.3679 2.5618 48 1 2.8121 -1.2523 3.6059 49 1 3.8804 -1.7561 6.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753820613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:47 Heat of formation + Delta-G solvation = -33.255795 kcal Electronic energy + Delta-G solvation = -32189.280656 eV Core-core repulsion = 28088.602653 eV Total energy + Delta-G solvation = -4100.678003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.28425 -37.54514 -36.76327 -35.66698 -35.40996 -34.19368 -33.16060 -31.92129 -30.00298 -29.46377 -28.64922 -26.85560 -25.91010 -24.89653 -23.88497 -22.55632 -21.11835 -19.95189 -18.61525 -18.11059 -17.42934 -17.10046 -16.36743 -16.12940 -15.80201 -15.47682 -14.95220 -14.79677 -14.28108 -14.05050 -14.03547 -13.85997 -13.54135 -13.38436 -13.16308 -13.01571 -12.88466 -12.74496 -12.41175 -12.33421 -12.28345 -12.04623 -11.81638 -11.63899 -11.48211 -11.32083 -11.27108 -11.15514 -10.90893 -10.81389 -10.74101 -10.53261 -10.50622 -10.29757 -10.11040 -9.71979 -9.33164 -9.25196 -8.48333 -8.11269 -7.87912 -6.30543 -5.32680 -2.53445 0.43589 2.80548 3.40597 3.50729 3.68012 3.72739 3.73610 4.25857 4.31902 4.63629 4.75349 4.81865 4.86645 4.91666 4.96019 4.98517 5.10812 5.17857 5.26758 5.34126 5.43586 5.45720 5.52955 5.59775 5.61253 5.75269 5.82074 5.87584 5.94249 5.98666 6.00256 6.03409 6.06381 6.11229 6.18442 6.26268 6.37022 6.53175 6.59363 6.69518 6.83198 7.04837 7.39185 8.03971 8.05875 8.83662 9.07953 9.95078 10.57224 10.91120 11.89972 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007911 B = 0.006591 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.477926 B = 4247.229983 C = 6857.682651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.614 5.614 8 C 0.453 3.547 9 O -0.422 6.422 10 C 0.111 3.889 11 N -0.981 5.981 12 C 0.092 3.908 13 S 2.606 3.394 14 C -0.685 4.685 15 O -0.921 6.921 16 O -0.944 6.944 17 C 0.147 3.853 18 H 0.067 0.933 19 C 0.165 3.835 20 N -0.694 5.694 21 C -0.212 4.212 22 H 0.060 0.940 23 C -0.018 4.018 24 N -0.928 5.928 25 Si 0.895 3.105 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.291 1.291 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.011 0.989 47 H 0.035 0.965 48 H 0.382 0.618 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 -10.726 -18.703 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.013 4.013 7 N -0.354 5.354 8 C 0.235 3.765 9 O -0.288 6.288 10 C -0.019 4.019 11 N -0.818 5.818 12 C -0.053 4.053 13 S 2.695 3.305 14 C -0.832 4.832 15 O -0.911 6.911 16 O -0.935 6.935 17 C 0.044 3.956 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.338 5.338 21 C -0.344 4.344 22 H 0.078 0.922 23 C -0.213 4.213 24 N -0.578 5.578 25 Si 0.727 3.273 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.029 0.971 47 H 0.053 0.947 48 H 0.216 0.784 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.919 -9.941 -17.205 21.390 hybrid contribution -0.184 -0.579 0.362 0.707 sum -8.103 -10.520 -16.843 21.448 Atomic orbital electron populations 1.21828 0.95054 1.01781 1.01258 1.21469 0.96545 0.99385 0.94564 0.90445 1.21518 1.00494 0.95418 0.97560 1.22035 1.01436 0.96394 0.97512 1.21678 1.00107 0.94577 0.84955 1.47881 1.58450 1.10754 1.18288 1.20940 0.82081 0.89234 0.84219 1.91253 1.50540 1.61595 1.25435 1.21112 0.97320 0.95927 0.87568 1.57096 1.20544 1.70237 1.33899 1.21486 0.79103 1.00773 1.03959 1.05361 0.74631 0.76544 0.73935 1.30741 1.11198 1.29141 1.12161 1.93710 1.33097 1.79369 1.84934 1.93595 1.74225 1.81978 1.43658 1.21461 0.98774 0.79880 0.95497 0.91526 1.20828 0.96465 0.93856 0.85108 1.42203 1.43517 1.46815 1.01221 1.19007 1.15107 1.15340 0.84970 0.92152 1.24606 0.99949 0.99709 0.97059 1.69659 1.27832 1.32462 1.27801 0.86431 0.77467 0.77824 0.85533 1.21688 1.22033 1.21859 0.92120 0.93581 0.92573 0.92170 0.91927 0.91277 0.91481 0.91735 0.90603 0.88531 0.88613 0.93460 0.90744 0.89703 0.85829 0.85758 0.85869 0.97137 0.94713 0.78440 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.24 37.16 0.31 -1.44 16 2 C -0.10 -1.28 2.77 -90.50 -0.25 -1.53 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.12 5.43 -26.69 -0.14 -1.26 16 5 C -0.14 -1.18 5.75 -26.39 -0.15 -1.33 16 6 C 0.11 1.18 6.38 -3.48 -0.02 1.15 16 7 N -0.61 -9.46 2.41 -164.96 -0.40 -9.86 16 8 C 0.45 8.19 7.38 -10.99 -0.08 8.11 16 9 O -0.42 -10.09 10.15 5.56 0.06 -10.04 16 10 C 0.11 1.44 4.07 -5.19 -0.02 1.42 16 11 N -0.98 -14.06 2.61 -123.05 -0.32 -14.39 16 12 C 0.09 1.15 10.65 59.85 0.64 1.78 16 13 S 2.61 42.53 6.01 -107.50 -0.65 41.88 16 14 C -0.68 -6.42 10.99 101.05 1.11 -5.31 16 15 O -0.92 -19.64 16.99 -57.54 -0.98 -20.61 16 16 O -0.94 -19.34 16.57 -57.54 -0.95 -20.29 16 17 C 0.15 2.51 2.61 -67.60 -0.18 2.33 16 18 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.17 3.63 3.94 -4.04 -0.02 3.62 16 20 N -0.69 -19.40 3.20 -59.91 -0.19 -19.59 16 21 C -0.21 -6.61 9.73 -15.06 -0.15 -6.75 16 22 H 0.06 1.85 7.83 -52.49 -0.41 1.43 16 23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 24 N -0.93 -31.43 13.06 55.49 0.72 -30.71 16 25 Si 0.89 25.21 29.55 -169.99 -5.02 20.19 16 26 H -0.29 -8.15 7.11 56.52 0.40 -7.75 16 27 H -0.29 -8.30 7.11 56.52 0.40 -7.90 16 28 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 29 H 0.06 0.86 6.65 -51.93 -0.35 0.52 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 6.34 -51.93 -0.33 0.28 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 38 H 0.10 1.08 7.19 -51.93 -0.37 0.71 16 39 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 43 H 0.12 0.88 8.14 -51.92 -0.42 0.45 16 44 H 0.12 1.06 8.14 -51.92 -0.42 0.63 16 45 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.01 0.25 8.09 -51.93 -0.42 -0.17 16 47 H 0.04 0.81 5.36 -51.93 -0.28 0.54 16 48 H 0.38 11.56 7.23 -40.82 -0.30 11.26 16 49 H 0.25 8.25 8.31 -40.82 -0.34 7.91 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -43.10 386.62 -9.00 -52.10 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.04 Total: 5.38 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 0.95 Total: 0.12 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -0.18 Total: -74.54 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.87 Total: -50.94 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.02 Total: 20.19 kcal Atomic # 16 Polarization: 42.53 SS G_CDS: -0.65 Total: 41.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -43.10 -9.00 -52.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753820613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.847 kcal (2) G-P(sol) polarization free energy of solvation -43.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds