Wall clock time and date at job start Wed Apr 1 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.49838 * 2 1 4 4 C 1.53041 * 109.52632 * 239.91323 * 2 1 3 5 5 C 1.53041 * 109.53571 * 301.40628 * 4 2 1 6 6 C 1.53624 * 109.24135 * 298.50203 * 5 4 2 7 7 N 1.46931 * 108.53895 * 54.86313 * 6 5 4 8 8 C 1.34770 * 120.63048 * 126.36842 * 7 6 5 9 9 O 1.21282 * 120.00039 * 174.57093 * 8 7 6 10 10 C 1.50699 * 120.00015 * 354.57293 * 8 7 6 11 11 N 1.46507 * 109.47310 * 179.97438 * 10 8 7 12 12 C 1.46503 * 119.99971 * 84.99681 * 11 10 8 13 13 S 1.65599 * 119.99915 * 265.00366 * 11 10 8 14 14 C 1.81399 * 104.44583 * 269.99473 * 13 11 10 15 15 O 1.42093 * 104.27941 * 26.06746 * 13 11 10 16 16 O 1.42103 * 104.27694 * 153.92738 * 13 11 10 17 17 C 1.46929 * 118.73826 * 306.08881 * 7 6 5 18 18 H 1.08997 * 109.58577 * 294.07714 * 17 7 6 19 19 C 1.52995 * 109.58485 * 173.64746 * 17 7 6 20 20 N 1.46502 * 109.46968 * 73.28077 * 19 17 7 21 21 C 1.36939 * 120.00023 * 174.77302 * 20 19 17 22 22 H 1.07996 * 120.00132 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00086 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99914 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46905 * 60.00403 * 25 23 21 27 27 H 1.48497 * 109.47221 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47242 * 300.00439 * 25 23 21 29 29 H 1.09005 * 109.47095 * 299.93870 * 1 2 3 30 30 H 1.09000 * 109.46882 * 59.93245 * 1 2 3 31 31 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.45476 * 61.41953 * 4 2 1 33 33 H 1.08994 * 109.46073 * 181.38279 * 4 2 1 34 34 H 1.08998 * 109.50585 * 58.58031 * 5 4 2 35 35 H 1.09002 * 109.49856 * 178.65131 * 5 4 2 36 36 H 1.08996 * 109.74414 * 295.12470 * 6 5 4 37 37 H 1.08996 * 109.66548 * 174.54829 * 6 5 4 38 38 H 1.09003 * 109.47284 * 60.00192 * 10 8 7 39 39 H 1.08992 * 109.47229 * 299.99598 * 10 8 7 40 40 H 1.08999 * 109.46784 * 90.00101 * 12 11 10 41 41 H 1.09004 * 109.46757 * 330.00413 * 12 11 10 42 42 H 1.08997 * 109.47125 * 210.00197 * 12 11 10 43 43 H 1.09001 * 109.47367 * 60.00178 * 14 13 11 44 44 H 1.09006 * 109.47125 * 179.97438 * 14 13 11 45 45 H 1.09001 * 109.47356 * 300.00081 * 14 13 11 46 46 H 1.09005 * 109.46897 * 193.27584 * 19 17 7 47 47 H 1.08998 * 109.47675 * 313.28030 * 19 17 7 48 48 H 0.97004 * 119.99972 * 354.76617 * 20 19 17 49 49 H 0.96999 * 120.00374 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0415 -0.7231 -1.2481 5 6 1.5042 -2.1560 -1.2656 6 6 2.0201 -2.9053 -0.0278 7 7 1.6520 -2.1380 1.1699 8 6 0.9752 -2.7220 2.1785 9 8 0.7631 -2.1075 3.2024 10 6 0.4820 -4.1386 2.0341 11 7 -0.2172 -4.5395 3.2575 12 6 -1.6347 -4.2125 3.4317 13 16 0.5946 -5.3619 4.4436 14 6 0.3726 -7.1105 4.0149 15 8 1.9511 -4.9750 4.2727 16 8 -0.1125 -5.0470 5.6353 17 6 2.0413 -0.7234 1.2499 18 1 3.1273 -0.6455 1.2986 19 6 1.4221 -0.0909 2.4979 20 7 2.1266 -0.5710 3.6893 21 6 1.8174 -0.0580 4.9208 22 1 1.0545 0.7007 5.0136 23 6 2.4845 -0.5132 6.0497 24 7 3.4140 -1.4383 5.9366 25 14 2.0632 0.1870 7.7295 26 1 0.6321 -0.0729 8.0293 27 1 2.9104 -0.4611 8.7626 28 1 2.3115 1.6510 7.7320 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6995 -0.1961 -2.1388 33 1 3.1312 -0.7440 -1.2346 34 1 0.4145 -2.1362 -1.2540 35 1 1.8493 -2.6629 -2.1668 36 1 3.1045 -3.0017 -0.0811 37 1 1.5651 -3.8947 0.0181 38 1 1.3296 -4.8032 1.8662 39 1 -0.2017 -4.2008 1.1875 40 1 -2.2458 -5.0229 3.0344 41 1 -1.8629 -3.2899 2.8979 42 1 -1.8497 -4.0815 4.4922 43 1 0.7941 -7.2989 3.0276 44 1 0.8812 -7.7326 4.7515 45 1 -0.6906 -7.3507 4.0079 46 1 1.5093 0.9939 2.4367 47 1 0.3699 -0.3679 2.5618 48 1 2.8121 -1.2523 3.6059 49 1 3.8804 -1.7561 6.7255 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753820613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:45 Heat of formation + Delta-G solvation = -68.839271 kcal Electronic energy + Delta-G solvation = -32190.823671 eV Core-core repulsion = 28088.602653 eV Total energy + Delta-G solvation = -4102.221018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.55047 -38.72133 -38.13702 -36.98294 -36.77848 -35.96422 -34.45864 -33.57255 -31.75285 -30.31570 -29.82609 -28.15529 -27.14869 -26.19116 -25.32462 -24.18070 -22.53703 -21.12285 -19.82432 -19.49401 -18.89472 -18.59231 -17.84555 -17.29296 -17.06500 -16.81957 -16.64213 -16.04382 -15.73084 -15.28864 -15.14447 -15.10350 -14.93538 -14.84543 -14.28174 -14.03710 -13.97915 -13.92289 -13.79580 -13.72219 -13.54938 -13.25003 -13.17899 -13.05944 -12.91503 -12.80086 -12.57400 -12.54363 -12.36753 -12.33181 -12.12558 -11.96662 -11.83356 -11.78372 -11.57493 -11.19912 -11.15293 -10.81798 -10.42626 -9.47107 -9.24310 -8.57607 -7.80057 -4.98281 -0.69774 1.35129 1.42857 1.46746 1.69541 2.11485 2.32109 2.60454 3.16648 3.24089 3.50832 3.70059 3.74291 3.85869 3.98833 4.06081 4.10946 4.17082 4.21857 4.32981 4.34691 4.45425 4.47595 4.54074 4.61046 4.74188 4.75794 4.85164 4.87517 4.92059 4.96285 5.00270 5.02680 5.07472 5.09669 5.19642 5.30916 5.35174 5.38086 5.41924 5.51474 5.58777 5.65232 5.97485 6.38681 6.82730 7.44800 7.76845 8.30618 8.50726 9.43382 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007911 B = 0.006591 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3538.477926 B = 4247.229983 C = 6857.682651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.099 3.901 7 N -0.612 5.612 8 C 0.441 3.559 9 O -0.499 6.499 10 C 0.112 3.888 11 N -0.984 5.984 12 C 0.091 3.909 13 S 2.579 3.421 14 C -0.633 4.633 15 O -0.993 6.993 16 O -1.011 7.011 17 C 0.151 3.849 18 H 0.044 0.956 19 C 0.171 3.829 20 N -0.700 5.700 21 C -0.209 4.209 22 H 0.059 0.941 23 C -0.088 4.088 24 N -0.966 5.966 25 Si 0.958 3.042 26 H -0.291 1.291 27 H -0.296 1.296 28 H -0.271 1.271 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.162 0.838 44 H 0.141 0.859 45 H 0.159 0.841 46 H 0.001 0.999 47 H 0.025 0.975 48 H 0.365 0.635 49 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -13.300 -22.833 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.164 4.164 6 C -0.023 4.023 7 N -0.350 5.350 8 C 0.226 3.774 9 O -0.371 6.371 10 C -0.017 4.017 11 N -0.821 5.821 12 C -0.054 4.054 13 S 2.678 3.322 14 C -0.788 4.788 15 O -0.983 6.983 16 O -1.001 7.001 17 C 0.047 3.953 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.341 5.341 21 C -0.342 4.342 22 H 0.076 0.924 23 C -0.279 4.279 24 N -0.619 5.619 25 Si 0.788 3.212 26 H -0.219 1.219 27 H -0.222 1.222 28 H -0.197 1.197 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.170 0.830 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.181 0.819 44 H 0.159 0.841 45 H 0.177 0.823 46 H 0.019 0.981 47 H 0.043 0.957 48 H 0.197 0.803 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.608 -12.422 -21.405 26.548 hybrid contribution 0.267 0.135 1.496 1.526 sum -9.341 -12.287 -19.909 25.191 Atomic orbital electron populations 1.21763 0.94371 1.02023 1.01049 1.21422 0.96967 0.99042 0.93828 0.90854 1.21519 1.00414 0.96379 0.96297 1.22014 1.01794 0.95146 0.97467 1.22118 1.00613 0.95922 0.83635 1.48060 1.57241 1.10193 1.19479 1.22092 0.80697 0.91108 0.83476 1.91216 1.54007 1.63733 1.28125 1.21406 0.99259 0.92396 0.88662 1.56878 1.20797 1.70933 1.33450 1.21606 0.78991 1.02692 1.02126 1.05554 0.73015 0.80075 0.73564 1.30276 1.14343 1.19616 1.14566 1.93624 1.36570 1.82489 1.85653 1.93506 1.74590 1.84685 1.47365 1.21242 0.97104 0.81833 0.95111 0.93813 1.20852 0.95791 0.93304 0.85594 1.42288 1.43528 1.46259 1.02003 1.19371 1.13817 1.14358 0.86669 0.92351 1.25389 1.00778 1.00970 1.00800 1.69857 1.29505 1.34533 1.27990 0.85416 0.76726 0.78066 0.80978 1.21882 1.22186 1.19736 0.95180 0.90855 0.92088 0.89765 0.92168 0.90485 0.88121 0.91897 0.87170 0.86266 0.83036 0.87821 0.91539 0.93157 0.81945 0.84104 0.82301 0.98128 0.95699 0.80318 0.95102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.24 71.98 0.59 -2.52 16 2 C -0.09 -2.28 2.77 -10.71 -0.03 -2.31 16 3 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.11 -1.79 5.43 30.62 0.17 -1.62 16 5 C -0.13 -1.59 5.75 30.82 0.18 -1.41 16 6 C 0.10 1.77 6.38 86.51 0.55 2.32 16 7 N -0.61 -18.49 2.41 -794.19 -1.91 -20.40 16 8 C 0.44 16.09 7.38 87.66 0.65 16.74 16 9 O -0.50 -25.31 10.15 -3.03 -0.03 -25.34 16 10 C 0.11 2.64 4.07 85.63 0.35 2.99 16 11 N -0.98 -27.16 2.61 -543.21 -1.42 -28.58 16 12 C 0.09 2.17 10.65 127.77 1.36 3.54 16 13 S 2.58 85.03 6.01 -56.49 -0.34 84.69 16 14 C -0.63 -8.89 10.99 113.37 1.25 -7.65 16 15 O -0.99 -44.59 16.99 -127.65 -2.17 -46.76 16 16 O -1.01 -44.14 16.57 -127.65 -2.12 -46.26 16 17 C 0.15 5.31 2.61 44.97 0.12 5.42 16 18 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 19 C 0.17 8.02 3.94 86.38 0.34 8.36 16 20 N -0.70 -41.89 3.20 -343.45 -1.10 -42.98 16 21 C -0.21 -13.81 9.73 84.03 0.82 -12.99 16 22 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.09 -5.99 5.50 84.86 0.47 -5.52 16 24 N -0.97 -69.53 13.06 21.65 0.28 -69.25 16 25 Si 0.96 54.59 29.55 68.60 2.03 56.62 16 26 H -0.29 -16.50 7.11 99.48 0.71 -15.80 16 27 H -0.30 -16.76 7.11 99.48 0.71 -16.05 16 28 H -0.27 -14.41 7.11 99.48 0.71 -13.71 16 29 H 0.03 0.86 6.65 -2.38 -0.02 0.85 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.34 5.97 -2.39 -0.01 1.33 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.92 6.34 -2.39 -0.02 0.90 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.22 5.93 -2.39 -0.01 1.20 16 38 H 0.12 2.28 7.19 -2.39 -0.02 2.27 16 39 H 0.15 1.86 7.88 -2.39 -0.02 1.84 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 42 H 0.05 1.54 6.91 -2.39 -0.02 1.53 16 43 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.00 0.05 8.09 -2.38 -0.02 0.03 16 47 H 0.03 1.25 5.36 -2.39 -0.01 1.24 16 48 H 0.37 23.83 7.23 -92.71 -0.67 23.16 16 49 H 0.24 16.93 8.31 -92.71 -0.77 16.15 16 Total: -1.00 -108.65 386.62 0.31 -108.34 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.28 Total: 24.57 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.80 Total: 5.34 kcal Atomic # 7 Polarization: -157.06 SS G_CDS: -4.14 Total: -161.21 kcal Atomic # 8 Polarization: -114.04 SS G_CDS: -4.31 Total: -118.35 kcal Atomic # 14 Polarization: 54.59 SS G_CDS: 2.03 Total: 56.62 kcal Atomic # 16 Polarization: 85.03 SS G_CDS: -0.34 Total: 84.69 kcal Total: -108.65 0.31 -108.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753820613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.503 kcal (2) G-P(sol) polarization free energy of solvation -108.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds